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DYNAMIC LOCALIZATION OF PROTEINS AND CHROMOSOME IN BACTERIA

Research Project

Project/Area Number 11694221
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionKUMAMOTO UNIVERSITY

Principal Investigator

HIRAGA Sota  KUMAMOTO UNIVERSITY, INSTITUE OF MOLECULAR EMBRYOLOGY AND GENETICS, PROFESSOR, 発生医学研究センター, 教授 (40027321)

Co-Investigator(Kenkyū-buntansha) YAMANAKA Kunitoshi  KUMAMOTO UNIVERSITY, INSTITUTE OF MOLECULAR EMBRYOLOGY AND GENETICS, ASSISTANT PROFESSOR, 発生医学研究センター, 助手 (90212290)
仁木 宏典  国立遺伝学研究所, 放射線・アイソトープセンター, 助教授 (70208122)
山添 光芳  熊本大学, 医学部, 助手 (00284745)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥16,010,000 (Direct Cost: ¥14,600,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2001: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2000: ¥4,700,000 (Direct Cost: ¥4,700,000)
Fiscal Year 1999: ¥5,200,000 (Direct Cost: ¥5,200,000)
KeywordsDNA methyltransferase / SeqA protein / MukB protein / replication fork / DNA sliding clump / sister chromosome cohesion / DNAメチラーゼ / SeqA / MukB / 染色体分配 / MutS / 複製装置 / DNAメチレーション / 複製起点 / 複製開始 / DnaA / Muts / ミスマッチ修復
Research Abstract

SeqA protein binds preferentially hemimethylated GATC sequences, and regulates negatively initiation of chromosome replication in E. coli. We demonstrated that purified SeqA inhibits binding of initiation protein DnaA to hemimethylated oriC DNA. In newborn cells, two MukB-GFP fluorescent foci are located at 1/4 and 3/4 cellular positions and one SeqA focus is located at the mid-cell position. Subsequently, a SeqA focus is divided into two and those migrate to the cell quarter positions. Beta-subunit (DnaN, DNA sliding clump) of DNA polymerase III holoenzyme is localized in cytosolic spaces at the cell poles in non-replicating cells. However, when chromosome replication is initiated, the subunit is recruited into nucleoid and forms a cluster at mid-cell. A beta-subunit cluster is separated into two that are located at the cell quarter positions, when two SeqA clusters are located at the cell quarter positions. These results support our 'translocating replication factories' model, in which paired replication apparatuses that act for bi-directional replication are first located closely with each other at mid-cell, and then migrate to the cell quarter positions. We found that sister chromosomes are cohesive with each other after replication and the cohesion is released in late period of 41 chromosome replication. Cohesion of sister chromosomes was not observed in MukB null mutant cells, indicating that MukB participates in sister chromosome cohesion. We analyzed localization of nascent DNA segments that were pulse-labeled with 5-bromodeoxyuridine and found that MukB is essential for cohesion of two replication forks and also for proper localization of forks.

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (54 results)

All Other

All Publications (54 results)

  • [Publications] Onogi, T.: "The assembly and migration of SeqA-Gfp fusion in living cells of Escherichia coli"Mol. Microbiol.. 31. 1775-1782 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamazoe, M.: "Complex formation of MukB, MukE, and MukF proteins involved in chromosome partitioning in E. coli"EMBO J.. 18. 5873-5884 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Niki, H.: "Subcellular localization of plasmids containing the oriC region of the Eseherichia coli chromosome, with or without the sopABC partitioning system"Mol. Microbiol.. 34. 498-503 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Azam, T. A.: "Two types of localization of the DNA-binding proteins within the Eseherichia coli nucleoid"Genes Cells. 5. 613-626 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Onogi, T.: "Null mutation of the dam or seqA gene suppresses temperature-sensitive lethality but not hypersensitivity to novobiocin of muk null mutants"J. Bacteriol.. 182. 5898-5891 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Taghbalout, A.: "Dynamic localization of SeqA-bound nascent DNA clusters and MukF-MukE-MukB complex in Eseherichia coli cells"Genes Cells. 5. 873-884 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Niki, H.: "Dynamic organization of chromosomal DNA in Escheirchia coli"Genes Dev.. 14. 212-223 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hiraga, S.: "Bidirectional migration of SeqA-bound hemimethylated DNA clusters and pairing of oriC copies in Eseheirchia coli"Genes Cells. 5. 327-341 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sunako, Y.: "Sister chromosome cohesion of Escheirchia coli"Mol. Microbiol.. 42. 1233-1241 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawakami, H.: "Arrest of cell division and nucleoid partition by genetic alterations in the sliding clamp of the replicase and in DnaA"Mol. Genet. Genomics. 266. 167-179 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ohsumi, K.: "Different localization of SeqA-bound nascent DNA clusters and MukF-MukE-MukB complex in Escherichia coli cells"Mol. Microbiol.. 40. 835-845 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Onogi, T.: "Replication-dependent recruitment of the β-subunit of DNA polymerase III from cytosolic spaces to replication forks in Escherichia coli"J. Bacteriol.. 184. 867-870 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hiraga, S.: "Cell division and the Replicon. Active partitioning of bacterial DNA : the F plasmid and the chromosome"HFSP. 8 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hiraga, S.: "Dynamic localization of bacterial and plasmid chromosomes"Annu. Rev. Genetics, vol. 34. Annual Reviews Inc., Palo Alto, California. 38 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Onogi, H. Niki, M. Yamazoe, and S. Hiraga: "The assembly and migration of SeqA-Gfp fusion in living colls of Escherichia coil"Mol. Microbiol.. 6. 1775-1782 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Yamazoe, T. Onogi, Y Sunako, H. Niki, T. Ichiimura, K. Yamanaka, and S. Hiraga: "Complex formation of MukB, MukE, and Mukf proteins involved in chromosome partitioning in E. coli."EMBO J.. 18. 5873-5884 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Niki, S. Hiraga: "Subcellular localization of plasmids containing the oriC region of the Escherichia colt chromosome, with or without the sopABC partilioning system"Mol. Microbiol.. 34. 498-503 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Hiraga: "Dynamic localization of bacterial and plasmid chromosomes"Annu. Rev, Genetics. 34. 21-59 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. A. Azam, S. Hiraga, and A. Ishihama: "Two types of localization ofthe DMA-binding proteins within the Escherichia coli nucleoid"Genes. Cells. 8. 613-626 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Onogi, M. Yamazoe, C. Ichinose, H. Niki, and S. Hiraga: "Null mutation of the dam or seqA gene suppresses temperature- sensitive lethality but not hypersensitivity to novobiocin of muk null mutant"J. Bacteriol.. 20. 5898-5901 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A. Taghbalout, A. Landoulsi, R. Kern, M. Yamazoe, S. Hiraga, B. Holland, M. Kohiyama, and A. Malki: "Competition between the replication initiator DnaA and the sequestration factor SeqA for binding to the hemimethylated chromosomal origin of E. coli in vitro"Genes. Cells. 11. 873-884 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Niki, Y. Yamaichi, and S. Hiraga: "Dynamic organization of chromosomal DNA in Eschertchia coli."Genes Dev.. 2. 212-223 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Hiraga, C, Ichinose, T. Onogi, H. Niki, and M. Yamazoe: "Bidirectional migration of SeqA-bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coli."Genes. Cells. 5. 327-341 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Hiraga, H. Niki, and M. Yamazoe: "Active partitioning of bacterial DMA: the F plasmid and the chromosome"Cell Division and the Replicon. HFSP. 27-34 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y. Sunako, T. Onogi, and S. Hiraga: "Sister chromosome cohesion of Escheirchia coli."Mol. Microbiol.. 1233-1241 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Kawakami, T. Iwura, M. Takala, K. Sekimlzu, S. Hiraga, and T, Katayama: "Arrest of cell division and nucleoid partition by geneticaliens in the sliding clamp of the replicase and in DnaA"Mol. Genet. Genomics. 2. 167-179 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K. Ohsumi, M. Yamazoe, and S. Hiraga: "Different localization of bound nascent DNA clusters and MukF-MukE- MukB complex in Escherichia coli. cells"Mol. Microbiol.. 4. 835-845 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Onogi, K. Ohsumi, T. Katayama, and S. Hiraga: "Replication-dependent recruitment of the β-subunit of DNA polymerase III from cytosolic spaces to replication forks in Eschencnia coli. cells"J. Bacteriol.. 3. 867-870 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sunako, Y., Onogi, T., Hiraga, S.: "Sister chromosome cohesion of Escheirchia coli"Mol.Microbiol.. 42. 1233-1241 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kawakami, H., Iwura T., Takata, M., Seikimizu, K., Hiraga, S., Katayama, T.: "Arrest of cell division and nucleoid partition by genetic alterations in the sliding clamp of the replicase and in DnaA"Mol.Genet.Genomics. 266. 167-179 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Onogi, T., Ohsumi, K., Katayama, T., Hiraga, S.: "Replication-dependent recruitment of the β-subunit of DNA polymerase III from cytosolic spaces to replication forks in Escherichia coli"J.Bacteriol.. 184. 867-870 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ohsumi, K., Yamazoe, M., Hiraga, S.: "Dynamic localization of SeqA-bound nascent DNA clusters and MukF-MukE-MukB complex in Escherichia coli cells"Mol.Microbiol.. 40. 835-845 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ichimura, T., Yamazoe, M., Maeda, M., Wada, C., Hiraga, S.: "Proteolytic Activity of YibP Protein in Escherichia coli"J.Bacteriol.. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ohsumi,k.,Yamazoe,M.,and Hiraga,S.: "Dynamic localization of SeqA-bound nascent DNA clusters and MukF-MukE-MukB complex in Escherichia coli cells."Mol.Microbiol. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hiraga,S.,C.Ichinose,T.Onogi,H.Niki,and M.Yamazoe: "Bidirectional migration of SeqA-bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coli."Genes Cells. 5. 327-341 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hiraga,S.,H.Niki,and M.Yamazoe: "Active partitioning of bacterial DNA : the F plasmid and the chromosome."Cell Division and the Replicon.Human Frontier Science Program, Strasbourg. 27-34 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Niki,H.,Y.Yamaichi,and S.Hiraga: "Dynamic Organization of Chromosomal DNA in Escherichia coli."Genes Dev. 14. 212-223 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Onogi,T.,M.Yamazoe,C.Ichinose,H.Niki,and S.Hiraga: "Null mutation of the dam or seqA gene suppresses temperature-sensitive lethality but not hypersensitivity to novobiocin of muk null mutants."J.Bacteriol. 182. 5898-5901 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Taghbalout,A.,A.Landoulsi,R.Kern,M.Yamazoe,S.Hiraga,B.Holland,M.Kohiyama,and A.Malki: "Competition between the replication initiator DnaA and the sequestration factor SeqA for binding to the hemimethylated chromosomal origin of E.coli in vitro."Genes Cells. 5. 873-884 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hiraga,S: "Annu.Rev.Genetics,vol.34.Annual Reviews Inc.,Palo Alto,California"Dynamic localization of bacterial and plasmid chromosomes.. 38 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Niki H.: "Dynamic organization of chromosomal DNA in Escherichia coli."Genes Dev. 14. 212-213 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Niki H.: "Progressing molecular cell biology in bacteria: chromosome partitioning and cell division"蛋白質・核酸・酵素. 45. 115-117 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Iwasaki,H.: "Identification of functional motifs of the RuvB motor protein for Holliday Junction branch migration an AAA+ class helicase, by mutational analyses and sequence alignment of the homologs."Mol. Microbiol.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Teff,D.: "A colicin-tolerant Escherichia coli mutant that confers Hfl phenotype carries two mutations in the region coding for the C-terminal domain of FtsH(HflB)."FEMS Microbiol. Lett.. 183. 115-117 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Makino,S.: "Second transmembrane segment of FtsH plays a role in its proteolytic activity and homo-oligomerization."FEBS Lett.. 460. 554-558 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Karata,K: "Dissecting the role of a conserved motif (the second region of homology) in the AAA family of ATPases: site-directed mutagenesis of the ATP-dependent protease FtsH."J. Biol. Chem.. 274. 26225-26232 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Landoulsi A.: "Initiation of DNA replication in Δcya mutants of Escherichia coli K12."Biochimie. 81. 827-834 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] d'Alencon E.: "Replication cycle dependent association of SeqA to the outer membrane fraction of E. coli."Biochimie. 81. 841-846 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Lyngstadaas A.: "The gene for 2-phosphogiycolate phosphatase (gph) in Escherichia coli is located in the same operon as dam and at least five other diverse genes."Biochim Biophys Acta. 1472. 367-384 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Reshetnyak E.: "Hemi-methylated oriC DNA binding activity found in non-specific acid phosphatase"Mol Microbiol. 31. 167-175 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Onogi T.: "The assembly and migration of SeqA-Gfp fusion in living cells of Escherichia coli."Mol Microbiol. 31. 1775-1782 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Niki H.: "Subcellular localization of plasmids containing the oriC region of the Escherichia coli chromosome, with or without the sopABC partitioning system."Mol Microbiol. 34. 498-503 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamazoe M.: "Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli."EMBO J. 18. 5873-5884 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Carlson C. R.: "Regulation of the start of DNA replication in Schizosaccharomyces pombe"J Cell Sci. 112. 939-946 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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