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A study on innovative computer simulation for drug design

Research Project

Project/Area Number 11695096
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用薬理学・医療系薬学
Research InstitutionKobe Gakuin University

Principal Investigator

AKAHO Eiichi  Kobe Gakuin University, Faculty of Pharmaceutical Sciences, Associate Professor, 栄養学部, 助教授 (50122239)

Project Period (FY) 1999 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 2000: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1999: ¥1,200,000 (Direct Cost: ¥1,200,000)
Keywordscomputer simulation / drug design / docking / receptor / enzyme inhibitor / computational chemistry / drug development / hydrogen boding / 酵素 / 阻害物質 / コンピュータ・ドッキング / コンピュータ・モデリング / 結合様式
Research Abstract

It is reported that non-steroidal anti-inflammatory drugs that block COX2 without inhibiting COX1 will be a better compound with less side effects. A proposal has been made to simulate enzyme selectivity by using Dcok4.0 and an article has been published in J.Chem. Software, 5(4) 147-62, (1999). Derivatives of HIV protease inhibitors have been synthesized by taking into consideration the structure of ligand complexes in HIV protease and a comparative study has been made between their Ki values and the Gibb's free energy obtained by applying molecular interaction between the enzyme and the ligand. A fair correlation was obtained and an article was reported in J.Chem. Software, 7(3) 103-114, (2001).
Derivatives of anti-inflammatory agents with indole skeleton have been synthesized and their COX2 selectivity was examined by applying the originally proposed method and the paper was submitted to European Journal of Medicinal Chemistry.
Docking modes of anti-inflammatory sampangine against DNA was investigated and we are in preparation to submit the result for publication. Besides, Docking modes of tyrosine kinase inhibitors and COX2 selective compounds retrieved from chemical substance database have been investigated, and the results will be published.
Quite a few numbers of three-dimensional structures of prote in and DNA have been discovered and will be discovered more and more in the future . In addition to this feature, computer technology has made an enormous advancement. By applying these two types of advanced knowledge, we will continue to conduct docking research

Report

(3 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • Research Products

    (6 results)

All Other

All Publications (6 results)

  • [Publications] Eiichi AKAHO: "A study on binding modes of non-steroidal anti-inflamm-atory drugs to COX1 and COX2 as obtained by Dock4.0"J.Chem.Software. 5. 147-162 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Eiichi AKAHO: "A study on docking mode of HIV protease and their inhibitors"J.Chem.Software. 7. 103-114 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Eiichi AKAHO, et al.: "A study on binding modes of non-steroidal anti-Inflammatory drugs to COX1 and COX2 as obtained by Dcok4.0"J.Chem.Software. 5(4). 147-162 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Eiichi AKAHO: "A study on docking mode of HIV protease and their inhibitors"J.Chem.Software. 5(4). 103-114 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Eiichi AKAHO: "A Study on Docking Mode of HIV Protease and Their Inhibitions"J.Chem.Softwane. 7(3). 103-114 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] E.Akaho,C.Fujikawa,H.I.Runion,C.R.Hill,and H.Nakano: "A Study on Binding Modes of Nonsteroidal Antiinflammatory Drugs to Cox1 and Cox2 as Obtained by Dock4.0"The Journal of Chemical Software. 5・4. 147-162 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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