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Development of super catalytic antibody and application to new biosensor

Research Project

Project/Area Number 11793007
Research Category

Grant-in-Aid for University and Society Collaboration

Allocation TypeSingle-year Grants
Research Field 生物・生体工学
Research InstitutionHiroshima Prefectural University

Principal Investigator

UDA Taizo  Hiroshima Prefectural University, School of Biosciences, Professor, 生物資源学部, 教授 (20232837)

Co-Investigator(Kenkyū-buntansha) FUJII Ryoji  Fukuyama medical laboratory, Research Division, senior researcher, 研究部, 部長
HIFUMI Emi  Hiroshima Prefectural University, School of Biosciences, Assistant Professor, 生物資源学部, 助手 (90254606)
EGASHIRA Naoyoshi  Hiroshima Prefectural University, School of Biosciences, Professor, 生物資源学部, 教授 (90094060)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥14,400,000 (Direct Cost: ¥14,400,000)
Fiscal Year 2001: ¥14,400,000 (Direct Cost: ¥14,400,000)
Keywordscatalytic antibody / biosensor / electrode / gene / protein / antigen / gemline / substrate / gremline
Research Abstract

1. Many antibody genes were analyzed and then the enzymatic activities of the subunits were investigated. As the consequence, a characteristic feature that the catalytically active antibodies have the unique structure like catalytic triad in their conformation was revealed. The three dimensional structures of 91 monoclonal antibodies were examined using PDB and ours data. Over 30% of the antibodies possess the catalytic triad-like structure in their conformation. This means that such gene as being able to construct the catalytic triad-like structure is inherently present in germ line. The peptidase or/and protease activity of the antibody was observed whenever such structure was confirmed in the conformation by the molecular modeling.
2. We have found out some natural catalytic antibodies (the super catalytic antibody belongs to this category) for three years research program. The light and heavy chain of i41SL1-2 antibody displayed a short induction period and then high catalytically active phase started to decompose the antigen, resulting two phases reaction. These subunits of i41SL1-2 antibody showed similar behavior as a serine protease in the enzymatic reaction. Regarding the immunoaffinity to the antigen, they showed higher value than trypsin. On the other hand, with respect to kcat, the subunits displayed lower value in comparison with that of trypsin. Thus, the catalytic antibody is defined as a molecule situating between antibody and enzyme from the viewpoint of specificity and catalysis.
3. A new sensing system was accomplished using the reaction between some ruthenium complexes and amino acid (or peptide) which could be detected with the sensitivity of around 10^<-6>/M

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (36 results)

All Other

All Publications (36 results)

  • [Publications] E.Hifumi, Y.Okamoto, T.Uda: "Super Catalytic Antibody [I] : Decomposition of targeted protein by its antibody light chain"J.Biosci.Bioeng.. 88. 323-327 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Nishimura, E.Hifumi, K.Shimizu, N.Egashira, T.Uda: "Amplification of SPR responses for the immunoreaction using anti HIV gp41 antibody by the method of molecular accumulation"Trans.IEEE Jpn.. 119-E. 522-527 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Uda, E.Hifumi, K.Ohara: "Catalytic activity of antibody light chain to gp41 : A consideration of refolding in relation to activation mechanism"Chem.Immunol.. 77. 18-32 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] E.Hifumi, K.Ohara, Y.Niimi, T.Uda: "Removal of catalytic activity by EDTA from antibody light chain"BioMetals. 13. 289-294 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y.Zhou, E.Hifumi, Y.Niimi, T.Uda: "Preparation and immunological features of syngeneic monoclonal anti-idiotypic antibody using complementarity determining region(CDR) peptide as the immunogen"Lett.Peptide Science. 7(5). 299-310 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Uda, K.Inoue, T.Nishimura, E.Hifumi, K.Shimizu, N.Egashira: "Simultaneous detection of two antigens by surface plasmon resonance sensor"Electrochemistry. 69. 976-979 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 宇田泰三, 一二三恵美: "最新酵素利用技術と応用展開(バイオテクノロジーシリーズ)"シーエムシー. 370 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] E. Hifumi, Y. Okamoto, T. Uda: "Super Catalytic Antibody [I] : Decomposition of targeted protein by its antibody light chain."J. Biosci. Bioeng.. 88. 323-327 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T, Nishimura, E. Hifumi , K. Shimizu, N. Egashira, T. Uda: "Amplification of SPR responses for the immunoreaction using anti HIV gp41 antibody by the method of molecular accumulation."Trans. IEEE Jpn.. 119-E. 522-527 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Suzuki, N. Sugino, T. Fukaya, S. Sugiyama, T. Uda, R. Takaya, A. Yajima, H. Sasano: "Super oxide dismutase in normal cycling human ovaries : immunohistochemical localization and characterization."Fertility and Sterility. 72(4). 720-726 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] E. Hifumi, Y. Okamoto, T. Uda: "How and why 41S-2 antibody subunits acquire the activities to catalyze decomposition of the conserved sequence of gp41 of HIV-1."Appl. Biochem. Biotech.. 83. 209-220 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Uda, E. Hifumi, K. Ohara: "Catalytic activity of antibody light chain to gp41 : A consideration of refolding in relation to activation mechanism."Chem. Immunol.. 77. 18-32 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] E. Hifumi, H. Sakata, M. Nango, T. Uda: "Design of artificial molecular catalyst showing peptidase activity to the conserved sequence of HIV-1 envelope gp41."J. Mol. Catal. A : Chemical. 155. 209-218 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] E. Hifumi, K. Ohara, Y. Niimi, T. Uda: "Removal of catalytic activity by EDTA from antibody light chain."BioMetals. 13. 289-294 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y. Zhou, E. Hifumi, Y. Niimi, T. Uda: "Preparation and immunological features of syngeneic monoclonal anti-idiotypic autibody using complementarity determining region (CDR) peptide as the immunogen."Lett. Peptide Science. 7. 299-310 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Uda, K. Inoue, T. Nishimura, E. Hifumi, K. Shimizu, N. Egashira: "Simultaneous detection of two antigens by surface plasmon resonance sensor."Electrochemistry. 69. 976-979 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Uda, E. Hifumi: "Challenge of super catalytic antibody, Advanced Enzyme-based Techniques with Comprehensive Applications"CMC(Tokyo). 57-70 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Uda, K.Inoue, T.Nishimura, E.Hifumi, K.Shimizu, N.Egashira: "Simultaneous detection of two antigens by surface plasmon resonance sensor"Electrochemistry. 69. 976-979 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] N.Egasgira, T.Simamoto, K.Inoue, J.Piao, T.Uda: "Fraction of PCDDs, PCBs, and pesticides by column chromatography on exfoliated graphites"Anal.Sci.. 17. 783-784 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Zhou, E.Hifumi, Y.Niimi, T.Uda: "Preparation and immunological features of syngeneic monoclonal anti-idiotypic antibody using complementarity determining region(CDR) peptide as the immunogen"Lett.Peptide Science. 7(5). 299-310 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Zhou, E.Hifumi, H.Kondo, T.Uda: "Presence of catalytic activity of the antibody light chain raised against complementarity determining region peptide of super catalytic antibody"Adv.Biochem.Prod.Technology. (in press). (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 宇田泰三, 一二三恵美: "「スーパー抗体酵素」のチャレンジ"バイオインダストリー. 18(8). 5-15 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 宇田泰三: "ナノ材料/素子としての人工抗体酵素への期待"バイオインダストリー. 19(3). 23-34 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 宇田泰三, 一二三恵美: "最新酵素利用技術と応用展開(バイオテクノロジーシリーズ)"シーエムシー. 370 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 宇田泰三: "新規バイオ素子に向けた抗原・抗体の分子設計とセンサへの応用"化学センサ,Suppliment B. 16(1). 7-13 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 宇田泰三: "「スーパー抗体酵素」と免疫測定法への期待"免疫科学測定法研究会年報. 第4号. 75-80 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hifumi,E.,Okamoto,Y.,Uda,T.: "Highly selective and sensitive SPR immunosensor for detection of methamphetamine."Appl.Biochem.Biotech.,. 83. 209-220 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hifumi,E.,Okamoto,Y.,Uda,T.: "Super Catalytic Antibody [I] : Decomposition of targeted protein by its antibody light chain."J.Biosci.Bioeng.. 88. 323-327 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ishimaru,M.,Morikawa,K.,Hifumi,E.,Itoh,T.,Uda,T.: "Analysis of the antigen recognition sites of anti-methamphetamine monoclonal antibodies (II) 〜unique feature of MA-3 Antibody."J.Biosci.Bioeng.. 89(5). 492-494 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hifumi,E.,Ohara,K,Niimi,Y.,Uda,T.: "Removal of catalytic activity by EDTA from antibody light chain."BioMetals. 13. 289-294 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 宇田泰三: "「免疫センサと今後の課題」"免疫科学測定法研究会年報. 第3号. 27-30 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 西村知晃、一二三恵美、宇田泰三: "Helicobactor pylori菌及びその破砕物のSPRによる検出"化学センサ,Suppliment A. 15. 148-150 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] G. Sakai, S. Nakata, T. Uda, N. Miura N. Yamazoe: "Highly selective aud sensitive SPR immunosensor for detection of methamphetamine."Electrochimica Acta. 44. 3849-3854 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] E Hifiml Y. Okamoto, T. Uda: "Super Catalytic Antibbdy [I] : Decomposition of targeted protein by its antibody light chain."J. Biosci. Bioeng.. 88. 323-327 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T Nrshimura, E Hifumi ,K Shimizu, N. Egashira, T. Uda: "Amplirication of SPR responses for the immunoreaction using anti HIV gp41 antibody by the method of moibcuiar accumuiation"Trans. IEEE Jpn.. 119・E. 522-527 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] E. Hifumi, Y. Okamoto, T. Uda: "How and why 41S-2 antibody subunits acquire the activities to catalyze decomposition off. Conserved sequence of gp41 of HIV-1."Appl. Biochem. Biotech.. 83. 209-220 (2000)

    • Related Report
      1999 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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