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Functional Analysis of Biosynthetic Enzymes for Natural Products

Research Project

Project/Area Number 12045213
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionThe University of Tokyo

Principal Investigator

EBIZUKA Yutaka  The University of Tokyo, School of Pharmaceutical Sciences, Professor, 大学院・薬学系研究科, 教授 (90107384)

Co-Investigator(Kenkyū-buntansha) FUJII Isao  The University of Tokyo, School of Pharmaceutical Sciences, Associate Professor, 大学院・薬学系研究科, 助教授 (70181302)
市瀬 浩志  東京大学, 大学院・薬学系研究科, 助手 (40282610)
Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥17,600,000 (Direct Cost: ¥17,600,000)
Fiscal Year 2002: ¥4,200,000 (Direct Cost: ¥4,200,000)
Fiscal Year 2001: ¥5,800,000 (Direct Cost: ¥5,800,000)
Fiscal Year 2000: ¥7,600,000 (Direct Cost: ¥7,600,000)
Keywordsbiosynthetic enzyme / biosynthetic gene / functional expression / polyketide / polyketide synthase / filamentous fungi / triterpene / triterpene synthase / カルコン / スチルベン / オキシドスクワレン / サポニン / ポロケタイド / 生合成 / 酵素 / メラニン / 分生子 / ソラナピロン / Aspergillno fumigatuo / 合成酵素 / 色素
Research Abstract

Diverse structures of natural products are elaborated by biosynthetic enzymes, and those enzymes which work at the most upstream of biosynthetic pathways are thus regarded as the primary origin of structural diversty exhibited by natural products.Our attentions have been focused on these biosynthetic enzymes for future engineering of rationally designed biosynthetic machineries for production of new chemicals. In this study, gene cloning and functional analysis of some of these enzymes have been attempted.
Continuous attempts for cloning of new polyketide synthases from filamentous fungi yielded several new clones.Enzyme functions of these clones were analyzed by heterologous expression in fungi and/or yeast. Construction of chimeric enzymes and site-directed mutants of these clones identified a new functional domain for aromatic pokyketide production.
Over thirty triterpene synthase cDNAs have been cloned from various triterpene producing plants by homology based PCR methods.Their enzyme functions have been identified by heterologous expression in yeast.Functional analysis of the eight out of thirteen Arabidopsis thaliana triterpene synthase clones was attempted.Only two clones are product specific synthases for known triterpenes, while the others are multifunctional clones.
In this four-year project, functional analysis of biosynthetic enzymes for polyketides and triterpenoids was extensively conducted.The results obtained in this study clearly show that functional genomics approach would provide a new methodology for the search of new natural products.Furthermore, by employing recombinant technology of these biosynthetic enzymes, development of practical production system for useful chemicals and construction of artificial chemical library comprising of "un-natural natural products" with diverse structures wouldbe expected.

Report

(4 results)
  • 2003 Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Isao Fujii, Yuichiro Mori, Akira Watanabe, Yasuyuki Kubo, Gento Tsuji, Yutaka Ebizuka.: "Enzymatic Synthesis of 1,3,6,8-Tetrahydroxynaphthalene Solely from Malonyl Coenzyme A by a Fungal Iterative Type I Polyketide Synthase PKS1."Biochemistry. 39. 8853-8858 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tetsuo Kushiro, Masaaki Shibuya, Kazoo Masuda, Yutaka Ebizuka.: "Mutational Studies on Triterpene Synthases. Engineering Lupeol Synthase into β-Amyrin Synthase."J.Am.Chem.Soc.. 122. 6816-6824 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Isao Fujii, Akira Watanabe, Ushio Sankawa, Yutaka Ebizuka.: "Identification of Claisen Cyclase Domain in Fungal Polyketide Synthase WA, a Naphthopyrone Synthase of Aspergillus nidulans."Chemistry & Biology. 8. 189-198 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Huei-Fung Tsai, Isao Fujii, Akira Watanabe, Michael H.Wheeler, Yun C.Chang, Yoshinori Yasuoka, Yutaka Ebizuka, K.J.Kwon-Chung: "Pentaketide-melanin Biosynthesis in Aspergillus fumigatus Requires Chain-length Shortening of a Heptaketide Precursor."J.Biol.Chem.. 276. 29292-29298 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Akira Watanabe, Yutaka Ebizuka.: "A Novel Hexaketide Naphthalene Synthesized by a Chimeric Polyketide Synthase Composed of Fungal Pentaketide and Heptaketide Synthases."Tetrahedron Lett.. 43. 369-374 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yutaka Ebizuka, Yuji Katsube, Takehiko Tsutsumi, Tetsuo Kushiro, Masaaki Shibuya.: "Functional Genomics Approach to the Study of Triterpene Biosynthesis."Pure Appl.Chem.. 75. 369-374 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Isao Fujii, Akira Watanabe, Yutaka Ebizuka.: "More Functions for Multifunctional Polyketide Synthases in Advances in Fungal Biotechnology for Industry, Agriculture, and Medicine"Kluwer Academic/Plenum Publishers, New York (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Isao Fujii, Yuichiro Mori, Akira Watanabe, Yasuyuki Kubo, Gento Tsuji, Yutaka Ebizuka.: "Enzymatic Synthesis of 1, 3, 6, 8-Tetrahydroxynapthalene Solely from Malonyl Coenzyme A by a Fungal Iterative Type I Polyketide Synthase PKS1."Biochemistry. 39. 8853-8858 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tetsuo Kushiro, Masaaki Shibuya, Kazuo Masuda, Yutaka Ebizuka.: "Mutational Studies on Triterpene Synthases. Engineering Lupeol Synthase into β-Amyrin Synthase"J. Am. Chem. Soc.. 122. 6816-6824 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Dae-Yeon Suh, Kazuki Fukuma, Jun-ichi Kagami, Yasuyo Yamazaki, Masaaki Shibuya, Yutaka Ebizuka, Ushio Sankawa.: "Identification of Amino Acid Residues Important in the Cyclization Reactions of Chalcone and Stilbene Synthases."Biochem. J.. 350. 229-235 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tetsuo Kushiro, Masaaki Shibuya, Kazuo Masuda, Yutaka Ebizuka.: "A Novel Multifunctional Triterpene Synthase from Arabidopsis thaliana."Tetrahedron Lett.. 41. 7705-7710 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Isao Fujii, Akira Watanabe, Ushio Sankawa, Yutaka Ebizuka.: "Identification of Claisen Cyclase Domain in Fungal Polyketide Synthase WA, a Naphthopyrone Synthase of Aspergillus nidulans."Chemistry & Biology. 8. 189-198 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hiroaki Hayashi, Pengu Huang, Keiichiro Inoue, Noboru Hiraoka, Yasumasa Ikeshiro, Kazufumi Yazaki, Shige Tanaka, Tetsuo Kushiro, Masaaki Shibuya, Yutaka Ebizuka.: "Molecular Cloning and Characterization of Isomultiflorenol Synthase, a New Triterpene Synthase from Luffa cylindrica Involved in Bryonolic Acid Biosynthesis."Eur. J. Biochem.. 268. 6311-6317 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Huei-Fung Tsai, Isao Fujii, Akira Watanabe, Michael H.Wheeler, Yun C.Chang, Yoshinori Yasuoka, Yutaka Ebizuka, K.J.Kwon-Chung.: "Pentaketide-melanin Biosynthesis in Aspergillus fumigatus Requires Chain-length Shortening of a Heptaketide Precursor."J. Biol. Chem.. 276. 29292-29298 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Akira Watanabe, Yutaka Ebizuka.: "A Novel Hexaketide Naphthalene Synthesized by a Chimeric Polyketide Synthase Composed of Fungal Pentaketide and Heptaketide Synthases."Tetrahedron Lett.. 43. 843-846 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nobutaka Funa.Yasuo Ohnishi, Yutaka Ebizuka, Sueharu Horinouchi.: "Properties and Substrate Specificity of RppA, a Chalcone Synthase Related Polyketide Synthase in Streptomyces griseus."J. Biol. Chem.. 277. 4628-4635 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yutaka Ebizuka, Yuji Katsube, Takehiko Tsutsumi, Tetsuo Kushiro, Masaaki Shibuya: "Functional Genomics Approach to the Study of Triterpene Biosynthesis."Pure Appl. Chem.. 75. 369-374 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miho Izumikawa, Michio Murata, Kazuo Tachibana, Yutaka Ebizuka, Isao Fujii.: "Cloning of Modular Type I Polyketide Synthase Genes from Salinomycin Producing Strain of Streptomyces albus."Bioorg. Med. Chem.. 11. 3401-3405 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Isao Fujii, Akira Watanabe, Yutaka Ebizuka.: "More Functions for Multifunctional Polyketide Synthases."Advances in Fungal Biotechnology for Industry, Agriculture, and Medicine, Kluwer Academic/Plenum Publishers, New York. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nobutaka Funa, Yasuo Ohnishi, Yutaka Ebizuka, Sueharu Horinouchi: "Properties and Substrate Specificity of RppA, a Chalcone Synthase Related Polyketid Synthase in Streptomyces griseus"J.Biol.Chem.. 277. 4628-4635 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Noriaki Kawano, Koji Ichinose, Yutaka Ebizuka: "Molecular Cloning and Functional Expression of cDNAs Encoding Oxidosqualene Cyclase from Costus speciosus"Biol.Pharm.Bull.. 25. 477-482 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masaaki Shibuya, Mizue Nishioka, Uahio Sankawa, Yutaka Ebizuka: "Incorporation of Three Deuterium Atoms Excludes Intermediacy of Stilbenecarboxylic Aci in Stilbene Synthase Reaction"Tetrahedron.Lett.. 43. 5071-5074 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Jin-young Chung, Isao Fujii, Shigeharu Harada, Ushio Sankawa, Yutaka Ebizuka.: "Expression, Purification and Characterization of AknX Anthrone Oxygenase Involved Aklavinone Biosynthesis in Streptomyces galilaeus"J.Bacteriology. 184. 6115-6122 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Nobutaka Funa, Yasuo Ohnishi, Yutaka Ebizuka, Sueharu Horinouchi.: "Alteration of Reaction and Substrate Specificity of Bacterial Type III Polyketide Synthase by Site-Directed Mutagenesis"Biochem.J.. 367. 781-789 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hong Zhang, Masaaki Shibuya, Yutaka Ebizuka, Shinso Yokota.: "Oxidosqualene Cyclases from Cell Suspension Cultures of Betula platyphylla var. japonica : Molecular Evolution of Oxidosqualene Cyclases in Higher Plants"Biol.Pharm.Bull.. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Isao Fujii, Akira Watanabe, Yutaka Ebizuka.: "The Aspergillus nidulans Polyketide Synthase WA.In "Handbook of Industrial Mycology""Marcel Dekker Inc.(印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.-F.Tsai: "Pentaketide-melanin Biosynthesis in Aspergillus fumigatus Requires Chain-length Shortening of a Heptaketide Precursor"J. Biol. Chem.. 276. 29292-29298 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Okamoto: "Inhibitory Effect of Aflastatin A on Melanin Biosynthesis by Colletotricum lagenarium"Microbiology. 147. 2623-2628 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] A.Watanabe: "A Novel Hexaketide Naphthalene Synthesized by a Chimeric Polyketide Synthase Composed of Fungal Pentaketide and Heptaketide Synthases"Tetrahedrom Lett.. 43. 843-846 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] I.Fujii: "Enzymatic Synthesis of 1,3,6,8-Tetrahydroxynaphthalene solely from Maloxyl Coenzyme A by a Fungal Iterative Type I polykatide synthase PKSI."Biochemistry. 39. 8853-8858 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] A.Watanabe: "Aspergillus fumigatus alb1 Encodes Naphthopyrone Synthase when Expressed in Aspergillus oryzae."FEMS Microbiology Letters. 192. 39-44 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] I.Fujii: "Identification of Claisen Cyclase Domain in Fungal polyketide Systhase WA, a Naphthopyrone Synthase of Aspergillus nidulans"Chemistry & Biology. 8. 189-198 (2001)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2018-03-28  

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