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Frontier in Structure Elucidation of Natural Products

Research Project

Project/Area Number 12045243
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionOsaka University

Principal Investigator

MURATA Michio  Osaka University, Graduate School of Science, Professor, 大学院・理学研究科, 教授 (40183652)

Co-Investigator(Kenkyū-buntansha) YOSHIDA Manabu  University of Tokyo, Misaki Marine Biological Station, Lecturer, 大学院・理学系研究科, 講師 (60301785)
松森 信明  大阪大学, 大学院・理学研究科, 助手 (50314357)
Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥16,800,000 (Direct Cost: ¥16,800,000)
Fiscal Year 2002: ¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2001: ¥5,000,000 (Direct Cost: ¥5,000,000)
Fiscal Year 2000: ¥8,000,000 (Direct Cost: ¥8,000,000)
KeywordsNanomolar structure determination / Sperm attractant / Sperm activating substance / Tunicates / Sterol sulfate / NMR structure determination / Tandem mass spectrometry / Total synthesis / アンフォテリシンB / ポリエン抗生物質 / 作用機構 / クロスリンカー / コレステロール / エルゴステロール / 鍵化学物質 / 誘引物質 / タンパク質糖化 / 高感度NMR
Research Abstract

Chemotaxis of sperm toward eggs during fertilization is a crucial event for species conservation, particularly for animals living in aquatic environments. Relevant chemical attractants have been found from a few marine organisms such as sea urchins and corals. We previously showed that sperm of the ascidian Ciona intestinalis is activated and then attracted toward the egg by a factor released from the egg, which led to the purification of sperm-activating and attracting factor (SAAF) from the egg-conditioning medium of Ciona intestinalis.
The structure of SAAF was proposed to be a novel polyhydroxysterol sulfate on the basis of 2D-^1H NMR and FAB-MS/MS analysis using no more than approximately 4 microgram of a specimen. However, there still remained small but serious ambiguity that the biological activity might be attributed to a minor constituent. Synthesis is, therefore, essential for the unequivocal identification of SAAF as the active principle, and for the complete structure elucidation including the stereochemistry at C25. SAAF and its C-25 epimer were synthesized from chenodeoxycholic acid in 19 steps via the pivotal intermediate and both the sperm-activating and attracting activity of them were bioassayed. Synthetic SAAF activated the sperms of ascidian Ciona intestinalis at 3.7 nM and concurrently exhibited the attracting activity at<10 nM, which led to the unambiguous structure determination of SAAF and the verification of its dual activity. It is noteworthy that 25-epi-SAAF turned out to possess the comparative activities as those of SAAF.

Report

(4 results)
  • 2003 Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (50 results)

All Other

All Publications (50 results)

  • [Publications] 村田道雄: "Labeling pattern of okadaic acid form ^<18>O_2 and [^<18>O_2]acetate elucidated by collison-induced dissociation tandem mass spectrometry"Journal of American Chemical Society. 120. 147-151 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 田中 勲: "A new ceramide with a novel branched-chain fatty acid isolated from the epiphytic dinoflagellate Coolia monotis"Journal of Natural Products. 61. 685-688 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 村田道雄: "Absolute configuration of amphidinol 3, the first complete structure determination from amphidinol homologues"Journal of American Chemical Society. 121. 870-871 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 松森信明: "Stereochemical determination of acyclic structures based on carbon-proton spin-coupling constants"Journal of Organic Chemistry. 64. 866-876 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 泉川美穂: "^<18>O-labeling pattern of okadaic acid from H_2^<18>O in dinoflagellates Prorocentrum lima elucidated by tandem mass spectrometry"European Journal of Biochemistry. 267. 5179-5182 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 赤坂和昭: "Absolute configuration of a ceramide with a novel branched-chain fatty acid isolated from the epiphytic dinoflagellates Coolia monotis"Bioscience Biotechnology Biochemistry. 64. 1842-1846 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 蓬台俊宏: "Acetate labeling patterns of dinoflagellates polyketaides, amphidinols 2,3 and 4"Tetrahedron. 57. 5551-5555 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 松岡 茂: "Cholesterol werkedly reduces ion permeability induced by membrane-bound amphotericin B"Biochimica et Biophysica Acta. 1564. 5179-5182 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 松森信明: "Amphotericin B covalent dimers forming sterol-dependent ion-permeable membrane channels"Journal of American Chemical Society. 124. 4180-4181 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 山路奈保子: "Amphotericin B dimers with bis-amide linkage bearing powerful membrane permeabilizing activity"Organic Letters. 4. 2087-2089 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 吉田 学: "A chemoattractant of the ascidian spermatozoa is a novel sulfated steroid"Proceeding National Academy of Science U.S.A.. 99. 14831-14836 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 大石 徹: "Synthesis of endogenous sperm-activating and attracting factor isolated from ascidian Ciona intestinalis"Tetrahedron Letters. 44. 6387-6389 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 松岡 茂: "Membrane permeabilizing activity of amphotericin B is affected by chain length of phsophatidylcholine added as minor constituent"Biochimica et Biophysica Acta. 1617. 109-115 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 松岡 茂: "Amphotericin B-phsopholipid covalent conjugates : dependence of membrane-permeabilizing activity on acy-chain length"Organic and Biomolecular Chemistry. 1. 3882-3884 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 松森 信明: "Amphotericin B Covalent Dimers bearing Tartarate Linkage"Chemistry and Biodiversity. 1. 346-352 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 大石 徹: "Synthesis of endogenous sperm-activating and attracting factor isolated from ascidian Ciona intestinalis"Tetrahedron. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 松森信明: "Amphotericin B-ergosterol covalent conjugate bearing powerful membrane permeabilizing activity"Chemistry and Biology. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 村田道雄, 吉田 学: "ナノモルへの挑戦、微量構造解析の最先端 -生物現象鍵物質の微量構造決定"化学と生物. 41・2. 114-117 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 村田道雄 (分担執筆): "機器分析実験 (梅澤喜夫、本水昌二、渡会 仁、寺前紀夫 編)"東京化学同人. 5 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 村田道雄 (分担執筆): "NMR分光法 日本分光学会 測定法シリーズ 41 (阿久津秀雄、島田一夫、鈴木栄一郎、西村善文 編)"学会出版センター. 13 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Murata, M., Izumikawa, K., Fujita, T., Naoki, H.: "Labeling Pattern of Okadaic acid frm ^<18>O_2 and [^<18>O_2]acetate elucidated by collision-induced dissociation tandem mass spectrometry."J. Am. Chem. Soc.. 120. 147-151 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tanaka, I., Matsuoka, S., Murata, M., Tachibana, K.: "A new ceramide with a novel branched-chain fatty acid isolated from the epiphytic dinoflagellate Coolia monotis."J. Nat. Prod.. 61. 685-688 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Murata, M., Matsuoka, S., Matsumori, N., Paul, G.K., Tachibana, K.: "Absolute configuration of amphidinol 3, the first complete structure determination from amphidinol hmologues : Application of a new configuration analysis based on the carbon-hydrogen spin-coupling constants."J. Am. Chem. Soc.. 121. 870-871 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsumori, N., Kaneno, D., Murata, M., Nakamura, H., Tachibana, K.: "Stereochemical determination of acyclic structures based on carbon-proteon spin coupling constants-A method of configuration analysis for natural products."J. Org. Chem.. 64. 866-876 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Izumikawa, M., Murata, K., Fujita, T., Naoki, N.: "^<18>O-labelling pattern of okadaic acid from H_2^<18>O in dinoflagellate Prorocentrum lima Elucidated by Tandem Mass Spectrometry."Eur. J. Biochem.. 267. 5179-5182 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kazuaki Akasaka, K., Shichijyukari, S., Matsuoka, S., Murata, M., H.Meguro, H.Ohrui.: "Absolute configuration of a ceramide with a novel branched-chain fatty acid isolated from teh epiphytic dinoflagellate, Coolia monotis."Biosci. Biotech. Biochem.. 64. 1842 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Houdai, M., Matsuoka, S., Murata, M., Satake, M., Ota, S., Oshima, Y., Rhodes.L.L.: "Acetate labeling patterns dinoflagellate polyketides, amphidinols 2, 3 and 4."Tetrahedron. 57. 5551-5555 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsuoka, S., Murata, M.: "Cholesterol markedly reduces ion permeability induced by membrane-bound Amphotericin B."Biochim. Biophys. Acta. 1564. 429-434 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsumori, N., Yamaji, N., Matsuoka, S., Oishi, T., Murata, M.: "Amphotericin B covalent dimers forming sterol-dependent ion-permeable membrane channels."J. Am. Chem. Soc.. 124. 1480-4181 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamaji, N., Matsumori, N., Matsuoka, S., Oishi, T., Murata, M.: "Amphotericin B dimers with bis-amide linkage bearing prowerful membrane permeabilizing acitivty."Org. Lett.. 4. 2087-2089 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshida, M.Murata, M., Inaba, K., Morisawa, M.: "A chemoattractant of the ascidian spermatozoa is a novel sulfated steroid."Proc. Natl. Acad. Sci. U.S.A.. 99. 14831-14836 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Oishi, T., Tuchikawa, H., Murata, M., Yoshida, M., Morisawa, M.: "Synthesis of endogenous sperm-activating and attracting factor isolated from ascidian Ciona intestinalis."Tetrahedron Lett.. 44. 6387-6389 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsuoka.S., Murata, M.: "Membrane permeabilizing activity of amphotericin B is affected by chain length of phosphatidylcholine added as minor constituent."Biochim. Biophys. Acta. 1617. 109-115 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsuoka, S., Matsumori, N., Murata, M.: "Amphotericin B -phospholipid covalent conjugates : dependence fo membrane-permeabilizing activity on acyl-chain length. M."Org. Biomol. Chem.. 1. 3882-3884 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsumori, N., Masuda, R., Murata, M.: "Amphotericin B covalent dimers bearing tertrate linkage."Chem. Biodiver.. 1. 346-352 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Oishi, T., Tuchikawa, H., Murata, M., Yoshida, M., Morisawa, M.: "Synthesis of endogenous sperm-activating and attracting factor isolated from ascidian Cirona Intestinals."Tetrahedron. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsumori, N., Eiraku, N., Matsuoka, S., Oishi, T., Murata, M.: "Amphotericin B-ergosterol conjugata bearing powerful permeabilizing activity. Aoki, T., Iden, T."Chem. Biol.. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 松森 信明: "Amphotericin B covalent dimers forming sterol-dependent ion-permeable membrane channels"J. Am. Chem. Soc.. 124. 4180-4181 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 山路 奈保子: "Amphotericin B dimers with bis-amide linkage bearing powerful membrane permeabilizing activity"Org. Lett.. 4. 2087-2089 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 松岡 茂: "Cholesterol markedly reduces ion permeability induced by membrane-bound Amphotericin B"Biochim. Biophys. Acta. 1564. 429-434 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 松森 信明: "Amphotericin B-ergosterol conjugate exceeding its cholesterol homologue in membrane permeabilizing activity"Chemistry & Biology. (発表予定). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 大石 徹: "Identification and synthesis of a new sulfated sterol as an endogencus Sperm-activating and attracting factor from ascidian Ciona Intestinals"J. Am. Chem. Soc.. (発表予定). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 村田 道雄: "生物現象鍵物質の微量構造決定"化学と生物. 41(2). 114-117 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 松岡 茂: "Cholesterol markedly reduces ion permeability induced by membrane-bound amphotericin B"Biochim. Biophys. Acta. (印刷中).

    • Related Report
      2001 Annual Research Report
  • [Publications] 松森 信明: "Amphotericin B covalent dimers forming sterol-dependent ion-permeable membrane channels"J. Am. Chem. Soc.. (印刷中).

    • Related Report
      2001 Annual Research Report
  • [Publications] 蓬台 俊宏: "Acetate labeling patterns of dinoflagellate polyketides, amphidinols 2, 3 and 4"Tetrahedron. 57. 5551 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 村田 道雄: "非環状化合物の立体構造をNMRで決める"化学. 56. 72 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 村田 道雄: "天然分子の最先端構造解析"ファルマシア. 37. 619 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 飯島克昌: "Identification of N^ω-carboxymethylarginine as novel acid-labile advanced glycation end product in collagen"Biochemical J. 347. 23-27 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 泉川美恵: "^<18>O-labelling Pattern of Okadaic Acid from H_2^<18>O in Dinoflagellate Prorocentrum lima Elucidated by Tandem Mass Spectrometry."Eur.J.Biochem.. 267. 5179-5182 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2018-03-28  

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