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Identification of genes silenced in human gastric cancers

Research Project

Project/Area Number 12213150
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionNational Cancer Center

Principal Investigator

USHIJIMA Toshikazu  National Cancer Center Research Institute, Chief, 部長 (90232818)

Co-Investigator(Kenkyū-buntansha) KANEDA Atsushi  National Cancer Center Research Institute, Staff, 研究員 (10313024)
Project Period (FY) 2000 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥55,200,000 (Direct Cost: ¥55,200,000)
Fiscal Year 2004: ¥11,200,000 (Direct Cost: ¥11,200,000)
Fiscal Year 2003: ¥11,700,000 (Direct Cost: ¥11,700,000)
Fiscal Year 2002: ¥12,000,000 (Direct Cost: ¥12,000,000)
Fiscal Year 2001: ¥11,300,000 (Direct Cost: ¥11,300,000)
Fiscal Year 2000: ¥9,000,000 (Direct Cost: ¥9,000,000)
KeywordsDNA methylation / Epigenetics / Genome-wide screening / Gastric cancers / Rat / MS-RDA / CpG islands / Lysyl oxidase / HRASLS / LOX / Thrombomodulin / エピジェネティクス / Filamin / MNNG / gp115 / メチル化
Research Abstract

(1) DNA fragments aberrantly methylated in N-methyl-N'-nitro-N-nitrosoguanidine (MNNG) were searched for using a genome-wide screening technique, methylation-sensitive-representational difference analysis (MS-RDA). However, no silenced genes were identified. (2) Using surgical specimens of human gastric cancers, we identified methylation of a region within the INSIGI promoter CpG island and decreased INSIGI expression in association with the methylation. We also identified methylation of a CpG island covering exon 8 of p4lArc, a subunit of the Arp2/3 complex. Although its methylation was not associated with its reduced expression, expression of seven subunits of the Arp2/3 complex was frequently decreased in gastric cancers. (3) MS-RDA was performed using human gastric cancer cell lines, and we identified nine CpG islands that were in 5' regions and densely methylated. Treatment of gastric cancer cell lines with a demethylating agent, 5-aza-2'-deoxycitidine, confirmed that their downstream genes, LOX, HRASLS, FLNc, HAND1, Thrombomodulin, bA305P22.2.3, a homologue of RIKEN2210016F16, FL 132130, and PGAR, were silenced by the methylation of the 5 CpG islands. The first five genes were methylated in 12-17 (29-41 %) of 41 surgical specimens, and the methylation was associated with reduced gene expression. (4) LOX and HRASLS, which were known to induce reversion of ras-transformants, were introduced into gastric cancer cell lines. LOX was found to suppress cell growth, the number of colonies in soft agar, and sizes of tumors transplanted into nude mice, while HRASLS did not. (5) Frequent methylation of CpG islands and frequent demethylation of normally methylated CpG islands were analyzed in 93 gastric cancer surgical specimens. Frequent methylation and frequent demethylation were found in different sets of gastric cancers.

Report

(6 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (33 results)

All 2005 2004 2003 2002 2001 Other

All Journal Article (18 results) Publications (15 results)

  • [Journal Article] Detection and interpretation of altered methylation in cancer cells.2005

    • Author(s)
      Ushijima, T.
    • Journal Title

      Nat.Reviews Cancer 5

      Pages: 223-231

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Frequent hypomethylation in multiple promoter CpG islands is associated with global hypomethylation, but not with frequent promoter hypermethylation.2004

    • Author(s)
      Kaneda, A. 他
    • Journal Title

      Cancer Sci. 95

      Pages: 58-64

    • NAID

      10013721371

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Decreased expression of the seven ARP2/3 complex genes in human gastric cancers.2004

    • Author(s)
      Kaneda, A.他
    • Journal Title

      Cancer Lett 212

      Pages: 203-210

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Lysyl oxidase is a tumor suppressor gene inactivated by methylation and loss of heterozygosity in human gastric cancers.2004

    • Author(s)
      Kaneda, A.他
    • Journal Title

      Cancer Res. 64

      Pages: 6410-6415

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Focus on gastric cancer.2004

    • Author(s)
      Ushijima, T., Sasako, M.
    • Journal Title

      Cancer Cell 5

      Pages: 121-125

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Decreased expression of the seven ARP2/3 complex genes in human gastric cancers.2004

    • Author(s)
      Kaneda, A, Kaminishi, M, Sugimura, T, Ushijima, T.
    • Journal Title

      Cancer Lett 212

      Pages: 203-10

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Frequent hypomethylation in multiple promoter CpG islands is associated with global hypomethylation, but not with frequent promoter hypermethylation.2004

    • Author(s)
      Kaneda, A, Tsukamoto, T, Takamura-Enya, T, Watanabe, N, Kaminishi, M, Sugimura, T, Tatematsu, M, Ushijima, T.
    • Journal Title

      Cancer Sci 95

      Pages: 58-64

    • NAID

      10013721371

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Lysyl oxidase is a tumor suppressor gene inactivated by methylation and loss of heterozygosity in human gastric cancers.2004

    • Author(s)
      Kaneda, A, Wakazono, K, Tsukamoto, T, Watanabe, N, Yagi, Y, Tatematsu, M, Kaminishi, M, Sugimura, T, Ushijima, T.
    • Journal Title

      Cancer Res 64

      Pages: 6410-5

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Focus on gastric cancer.2004

    • Author(s)
      Ushijima, T, Sasako, M.
    • Journal Title

      Cancer Cell 5

      Pages: 121-5

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Frequent hypomethylation in multiple promoter CpG islands is associated with global hypomethylation, but not with frequent promoter hypermethylation.2004

    • Author(s)
      Kaneda, A.他
    • Journal Title

      Cancer Sci. 95

      Pages: 58-64

    • NAID

      10013721371

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Methylation-sensitive-representational difference analysis and its application to cancer research.2003

    • Author(s)
      Kaneda, A.他
    • Journal Title

      Ann.N.Y.Acad.Sci. 983

      Pages: 131-141

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Methylation-sensitive representational difference analysis and its application to cancer research.2003

    • Author(s)
      Kaneda, A, Takai, D, Kaminishi, M, Okochi, E, Ushijima, T.
    • Journal Title

      Ann N Y Acad Sci 983

      Pages: 131-41

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Reduced expression of the Insulin-induced protein 1 and p4l ARP2/3 complex genes in human gastric cancers.2002

    • Author(s)
      Kaneda, A.他
    • Journal Title

      Int.J.Cancer 100

      Pages: 57-62

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of silencing of nine genes in human gastric cancers.2002

    • Author(s)
      Kaneda, A.他
    • Journal Title

      Cancer Res. 62

      Pages: 6645-6650

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Reduced expression of the insulin-induced protein 1 and p41 Arp2/3 complex genes in human gastric cancers.2002

    • Author(s)
      Kaneda, A, Kaminishi, M, Nakanishi, Y, Sugimura, T, Ushijima, T.
    • Journal Title

      Int J Cancer 100

      Pages: 57-62

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of silencing of nine genes in human gastric cancers.2002

    • Author(s)
      Kaneda, A, Kaminishi, M, Yanagihara, K, Sugimura, T, Ushijima, T.
    • Journal Title

      Cancer Res 62

      Pages: 6645-50

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Silencing of HTR1B and reduced expression of EDN1 in human lung cancers, revealed by methylation-sensitive representational difference analysis.2001

    • Author(s)
      Takai, D.他
    • Journal Title

      Oncogene 20

      Pages: 7505-7513

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Silencing of HTR1B and reduced expression of EDN1 in human lung cancers, revealed by methylation-sensitive representational difference analysis.2001

    • Author(s)
      Takai, D, Yagi, Y, Wakazono, K, Ohishi, N, Morita, Y, Sugimura, T, Ushijima, T.
    • Journal Title

      Oncogene 20

      Pages: 7505-13

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Kaneda, A. 他: "Methylation-sensitive-representational difference analysis and its application to cancer research."Ann.N.Y.Acad.Sci.. 983. 131-141 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Asada, K. 他: "Reduced expression of GNA11 and silencing of MCT1 in human breast cancers."Oncology. 64. 380-388 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kaneda, A. 他: "Frequent hypomethylation in multiple promoter CpG islands is associated with global hypomethylation, but not with frequent promoter hypermethylation."Cancer Sci.. 95. 58-64 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ushijima, T. 他: "Focus on gastric cancer."Cancer Cell. 5. 121-125 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kaneda, A., Kaminishi, M., Sugimura, T., Ushijima, T: "Reduced expression of the Insulin-induced protein 1 and p41 ARP2/3 complex genes in human gastric cancers"Int.J.Cancer. 100. 57-62 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kaneda, A., Kaminishi, M., Yanagihara, K., Sugimura, T., Ushijima, T.: "Identification of Silencing of Nine Genes in Human Gastric Cancers"Cancer Res.. 62. 6645-6650 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Miyamoto, K., Ushijima, T.他6名: "Presence of promoter hypermethylation and post-transcriptional mechanisms responsible for reduced BRCA1 immunoreactivity"Jpn.J.Clin.Oncol.. 32. 79-84 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kaneda, A., Takai, D., Okochi, E., Kaminishi, M., Ushijima, T.: "Methylation-sensitive-representational difference analysis and its application to cancer research"Ann.N.Y.Acad.Sci.. 983. 131-141 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Takai, D., Ushijima, T. 他: "Silencing of HTR1B and reduced expression of EDN1 in human lung cancers, revealed by methylation-sensitive representational difference analysis"Oncogene. 20. 7505-7513 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kuramoto, T., Ushijima, T. 他: "Attractin/Mahogany/Zitter plays a critical role in myelination of the central nervous system"Proc. Natl. Acad. Sci. USA.. 98. 559-564 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Miyamoto, K., Ushijima, T. 他: "Presence of promoter hypermethylation and post-transcriptional mechanisms responsible for reduced BRCA1 immunoreactivity"Jpn. J. Clin. Oncol.. (in press.). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Takai,D.,Yagi,Y.,Habib,N.,Sugimura,T.and Ushijima,T.: "Hypomethylation of LINE1 retrotransposon in human hepatocellular carcinomas, but not in surrounding liver cirrhosis."Jpn.J.Clin.Oncol. 30. 306-309 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kuramoto,T.,Ushijima,T. 他: "Attractin/Mahogany/Zitter plays a critical role in myelination of the central nervous system."Proc.Natl.Acad.Sci.USA.. 98. 559-564 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Higo,K.,Ushijima,T. 他: "Generation of a polymorphic marker linked to thymoma susceptibility gene of rat 1 by genetically-directed representational difference analysis."Exp.Anim.. 49. 189-195 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Honda,H.,Ushijima,T. 他: "Acquired loss of p53 induces blastic transformation in p210bcr/abl-expressing hematopoietic cells : a transgenic study for blast crisis of human CML."Blood. 95. 1144-1150 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2018-03-28  

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