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Development of CGH array system and its application for personalized medicine in oral oncology and clinics

Research Project

Project/Area Number 12357012
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Surgical dentistry
Research InstitutionTokyo Medical & Dental University

Principal Investigator

AMAGASA Teruo  Tokyo Medica & Dental University, Graduate School of Medical and Dental Science, Professor, 大学院・医歯学総合研究科, 教授 (00014332)

Co-Investigator(Kenkyū-buntansha) KUNO Atsushi  Fujisawa Phermaceutical Co., LTD, Associate Director, 医療関連事業部・技術センター, 次長
INAZAWA Johji  Tokyo Medica & Dental University, Medical Research Institute, Professor, 大学院・難治疾患研究所, 教授 (30193551)
Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥36,100,000 (Direct Cost: ¥32,500,000、Indirect Cost: ¥3,600,000)
Fiscal Year 2002: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2001: ¥11,960,000 (Direct Cost: ¥9,200,000、Indirect Cost: ¥2,760,000)
Fiscal Year 2000: ¥20,500,000 (Direct Cost: ¥20,500,000)
Keywordsoral cancer / gene amplification / CGH array / cancer-related gene / oncogene / personalized medicine / 染色体 / ゲノム / 遺伝子 / マイクロアレイ / CGH / 口腔癌 / DNA / 一次構造 / FISH
Research Abstract

Accumulated evidence suggests that multiple genetic alterations occurring sequentially in a cell lineage, at the nucleotide levels as well as at the chromosome levels, underlie the carcinogenetic process in gastrointestinal tumors. Gene amplification is one of the mechanisms capable of activating genes that are implicated in developing tumors. Oncogenes are known to be activated by amplification in squamous cell carcinoma (SCC). By using CGH we performed extensive analysis of copy number aberrations in several types of tumors including oral SCCs. A total number of 800 tumors was analyzed and we could identify target genes within novel amplicons. Furthermore, we have constructed high-density CGH array systems as follows ; (1) an array harboring 4500 BACs throughout whole genome for exploring cryptic chromosome aberrations, (2) an array containing 800 cancer-related genes for "personalized medicine for cancer", and (3) an array harboring 212 BACs spanning the 20 Mb contig at chromosome 1p36. Our tools can open the window for exploring cryptic chromosome aberrations associated with pathogenesis in human tumors.

Report

(4 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (38 results)

All Other

All Publications (38 results)

  • [Publications] Nakakuki, K, Inazawa, J, Amagasa, T, et al.: "Novel targets for the 18p11.3 amplification frequently observed in esophageal squamous cell carcinomas"Carcinogenesis. 23. 19-24 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Imoto, I, Inazawa, J, et al.: "Expression of cIAP1, a target for 11q22 amplification, correlates with_resistance of cervical cancers to radiotherapy"Cancer Research. 62. 4860-4866 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yokoi, S, Inazawa, J, et al.: "A novel target gene, SKP2, within the 5p13 amplicon that is frequently detected in small cell lung cancers"Am J Pathol. 161. 207-216 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Li, QL, Inazawa, J, et al.: "Causal relationship between the loss of RUNX3 expression and gastric cancer"Cell. 109. 113-124 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Okamoto, R, Inazawa, J, et al.: "Damaged epithelia regenerated by bone marrow-derived cells in the human gastrointestinal tract"Nature Medicine. 8. 1011-1017 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yasui, K, Inazawa, J, et al.: "TFDP1, CUL4A, and CDC16 identified as targets for amplification at 13q34 in hepatocellular carcinomas"Hepatology. 35. 1476-1484 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Imoto, I, Inazawa, J, et al.: "Identification of cIAP1 as a candidate target gene within an amplicon at 11q22 in esophageal squamous cell carcinomas"Cancer Research. 61. 6629-6634 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakakuki K, Amagasa T, Inazawa J, et al.: "Novel targets for the 18p11.3 amplification frequently observed in esophageal squamous cell carcinomas"Carcinogenesis. 23. 19-24 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Imoto I, Inazawa J, et al.: "Expression of cIAP1, a target for 11q22 amplification, correlates with resistance of cervical cancers to radiotherapy"Cancer Res. 62. 4860-4866 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yokoi S, Inazawa J, et al.: "A novel target gene, SKP2, within the 5p13 amplicon that is frequently detected in small cell lung cancers"Am J Pathol. 161. 207-216 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Li QL, Inazawa J, et al.: "Causal relationship between the loss of RUNX3 expression and gastric cancer"Cell. 109. 113-124 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Okamoto R, Inazawa J, et al.: "Damaged epithelia regenerated by bone marrow-derived cells in the human gastrointestinal tract"Nat Med. 8. 1011-1017 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yasui K, Inazawa J, et al.: "TFDP1, CUL4A, and CDC16 identified as targets for amplification at 13q34 in hepatocellular carcinomas"Hepatology. 35. 1476-1484 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Imoto I, Inazawa J, et al.: "Identification of cIAP1 as a candidate target gene within an amplicon at 11q22 in esophageal squamous cell carcinomas"Cancer Res. 61. 6629-6634 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Imoto I, Tsuda H, Inazawa J, et al.: "Expression of cIAP1, a target for 11q22 amplification, Correlates with Resistance of Cervical Cancers to Radiotherapy"Cancer Research. 62・17. 4860-4866 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Saito-Ohara F, Imoto I, Inazawa J, et al.: "PPM1D is a potential Target for 17q Gain in Neuroblastoma"Cancer Research. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yokoi S, Yasui K, Inazawa J, et al.: "A novel target gene, SKP2, within the 5p13 amplicon that is frequently detected in small cell lung cancers"American Journal of Pathology. 161・1. 207-216 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Nakakuki K, Imoto I, Amagasa T, Inazawa J, et al.: "Novel targets for the l8p 11.3 amplificaflon frequently observed in esophageal squamous cell carcinomas"Carcinogenesis. 23・1. 19-24 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Okamoto R, Inazawa J, et al.: "Damaged epithelia regenerated by bone marrow #150 ; derived cells in the human gastrointestinal tract"Nature Medicine. 8・9. 1011-1017 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Li QL, Ito K, Inazawa J, et al.: "Causal relationship between the loss of RUNX3 expression and gastric cancer"Cell. 109・1. 113-124 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Uzawa N, et al.: "Homozygous deletions on the short arm of chromosome 3 in human oral squamous cell carcinomas"Oral Oncology. 37. 351-356 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Imoto I, et al.: "Identification of cIAP1 as a candidate target gene within an amplicon at 11q22 in esonhageal squamopus cell carcinomas"Cancer Research. 61(18). 6629-6634 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yasui K, et al.: "Identification of target genes within an amplicon at 14q12-q13 in esophageal squamous cell carcinomas"Genes Chromosome Cancer. 32(2). 112-118 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Imoto I, et al.: "SNO is a probable target for gene amplification at 3q26 in squamous cell carcinomas of the esophagus"Biochem. Biophys. Res. Commun.. 286(3). 559-565 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yang Z-Q, et al.: "A novel amplification harboring NFIB proximal to GASC1 at 9p23-24 In squamous cell carcinoma of the esophagus"J Cancer Res. 92(4). 423-428 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Shwe M, et al.: "p53 and MDM2 co-expression in tobacco and betel chewing-associated oral squamous cell carcinomas"J Med. Dent. Science. 48. 113-119 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Pimkhaokham A, et al.: "Non-random chromosomal imbalances in cell lines from esophageal squamous cell carcinomas : possible involvement of the ATF3 and CENPF genes in the lq32 amplicon."Japanese Journal of Cancer Research. 91・11. 1126-1133 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sato M, et al.: "Genetically high susceptibility to oral squamous cell carcinoma in terms of combilined genotyping of CYP1A1 and GSTM1 genes."Oral Oncology. 36・3. 267-271 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kurohara K, et al.: "Melton beta (ADAM19) gene : Cloning, mapping, and analysis of the regulatory region."Biochemical and Biophysical Research Communications. 270・2. 522-527 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Michi Y, et al.: "Human oral squamous cell carcinoma cell lines promote angiogenesis via expression of vascular endothelial growth factor and upregulation of KDR/flk-J expression in endothelial cells."Oral Oncology. 36・1. 81-88 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Mochida Y, et al.: "ASK1 inhibits Interleukin-1-Induced NF-kB activity through disruption of TRAF6-TAK1 interaction."The Journal of Biological Chemistry. 275・42. 32747-32752 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Mimura M, et al.: "Melanotic neuroectoderma tumor of infancy - Immunohistochemical and ultrastructural study-."The Asian Journal of Oral and Maxillfacial Surgery. 12・2. 217-224 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yang Z-Q.et al.: "Identification of a novel gene, GASC1, within an amplicon at 9p23-24 frequently detected in esophageal-cancer cell lines."Cancer Research. 60・17. 4735-4739 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Fukuda Y.et al.: "CD44 is a potential target of amplification within the 11p13 amplicon detected in gastric cancer cell lines."Genes.Chromosomes. and Cancer. 29・4. 315-324 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Imoto I. et al.: "Amplification and over-expression of TGIF2, a novel homeobox gene of the TALE superclass, in ovarian cancer cell lines."Biochemical and Biophysical Research Communications. 276・1. 264-270 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sugimoto N.et al.: "IQGAP1, a negative regulator of cell-cell adhesion, is up-regulated by gene amplification at 15q26 in gastric cancer cell lines, HSC39 and 40A."Journal of Human Genetics. 46・1. 21-25 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yang Z-Q.et al.: "A novel amplicon at 9p23-24 in squamous cell carcinoma of the esophagus that lies proximal to GASC1 and harbors NFIB."Japanese Journal of Cancer Research. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Watanabe T.et al.: "A novel amplification at 17q21-23 in ovarian cancer cell lines detected by comparative genomic hybridzation."Gynecologic Oncology. (in press). (2001)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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