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Molecular mecbanism for determination ofdynamics and positioning in nucleus of vertebrates

Research Project

Project/Area Number 12440212
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 遺伝
Research InstitutionNatiomal Institute of Genetics

Principal Investigator

IKEMURA Toshimichi  Natiomal Inst.of Genetics, Dept.of Popul.Genet, Professor, 集団遺伝研究系, 教授 (50025475)

Co-Investigator(Kenkyū-buntansha) FUKAGAWA Tatsuo  Natiomal Inst.of Genetics,Dept.of Popul.Genet,Assis.Prof, 集団遺伝研究系, 助手 (60321600)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥11,500,000 (Direct Cost: ¥11,500,000)
Fiscal Year 2001: ¥4,500,000 (Direct Cost: ¥4,500,000)
Fiscal Year 2000: ¥7,000,000 (Direct Cost: ¥7,000,000)
KeywordsTriplex / Polypurine / CENP / FISH / Nuclear organization / chromosome band boundary / Replication timing / DNA複製タイミング / ポリピリミジン
Research Abstract

The single-strand formation and transmolecular triplex formation are thought to enable sequences spaced distantly along the genome to associate with each other and organize nuclear DNA into ordered configurations. Triplex-forming DNAs in the human interphase nucleus were analyzed by combining immunodetection by antitriplex antibodies and fluorescence in situ "nondenaturing " hybridization employing polypurine/polypyrimidine (PuPy) -tract probes. The "nondenaturing" hybridization technique, which has been used to detect RNA, could detect single-stranded DNAs in nondenatured nuclei. Triplexes visualized differentially with distinct PuPy-tract probes were associated spatially with centromere sequences in the interphase nucleus in a sequence-specific manner. Therefore, we were interested in centromore formation and function. To determine the precise functions of centromere proteins, we examined their roles by generating a conditional loss-of-function mutant in the chicken DT40 cell line. We concluded that both CENP-I and CENP-H are necessary for localization of CENP-C but not CENP-A to the centromere. We also performed living cell analysis of cells expressing GFP-or YFP- tagged centromere proteins to observe the dynamics of chromosomes.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (38 results)

All Other

All Publications (38 results)

  • [Publications] Fukagawa, T.: "CENP-H, a constitutive centromere component, is required for centromere targeting of CENP-C in vertebrate cells"The EMBO Journal. 20. 4603-4617 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Watanabe, Y.: "Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q : disease-related genes in timing-switch regions"Human Molecular Genetics. 11. 13-21 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sonoda, E.: "Scc1/Rad21/MCD1 is required for sister chromatid cohesion and kinetochore function in vertebrate cells"Developmental Cell. 1. 759-770 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kaneya, S.: "Codon usage and tRNA genes in eukaryotes : Correlation of codon usage diversity with translation efficiency and with CG-Dinucleotide usage as assessed by multivariate analysis"J. Mol. Evol.. 53. 290-298 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kaneya, S.: "Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM) : characterization of horizontally transferred genes with emphasis on the E. coli O157 genome"Gene. 276. 89-99 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukagawa, T.: "Creation and characterization of temperature-sensitive CENP-C mutants in vertebrate cells"Nucleic Acids Research. 29. 3796-3803 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Shina, T.: "Genomic anatomy of a premier major histocompatibility complex paralogous region on chromosome 1q21-q22"Genome Research. 11. 789-802 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okamura, A.: "Gene structure, chromosomal localization and immunolocalization of chicken centromere proteins CENP-C and ZW10"Gene. 262. 283-290 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ohno, M.: "Non-B DNA structures spatially and sequence-specifically associated with individual centromeres in the human interphase nucleus"Chromosomes Today. 13. 57-69 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nogami, M.: "Intranuclear arrangement of human chromosome 12 correlates to large-scale replication domains"Chromosoma.. 108. 514-522 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nogami, M.: "Relative locations of the centromere and imprinted SNRPN gene within chromosome 15 territories during the cell cycle in HL60 cells"Journal of Cell Science. 113. 2157-2165 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Watanabe, Y.: "Replication timing of the human X-inactivation center (XIC) region : correlation with chromosome bands"Gene. 252. 163-172 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Watanabe, Y, Fujiyama, A, Ichiba, Y7 Hattori, M., Yada, T., Sakaki, Y and Ikemura, T.: "Chromosome-wide assessment of replication timing for human chromosomes llq and 21q : disease-related genes in timing-switch regions."Human Molecular Genetics. 11. 13-21 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sonoda, E., Matsusaka, X, Morrison, C, Vagnarelli, P., Hoshi, O., Ushiki, T., Nojima, K., Fukagawa, T., Waizenegger, I.C Peters, J-M., Earnshaw, W.C. and Shunichi Tafceda, S: "Socl/Rad21/MCpl is required for sister chrotnatid cohesion and kinetoehore function in vertebrate cells."Dev. Cell. 1. 759-770 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kanaya, S., Yamada, Y, Kinouchi M., Kudo, Y, and Ikemura, T: "Codon usage and tRNA genes in eukaryotes : Correlation of coaorf usage diversity with translation efficiency and with CG-0inudfcotidゥ usage as assessed by multivariate analysis."J. Mol. Evol. 53. 290-298 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kanaya, S., Kinouchi M., Abe, T., Kudo, Y, Yamada, Y, Nislii, T., Mori, Mori, H. and Ikemura, T: "Analysis of codon usage diversity of bacterial gertes with a self-organizing map (SOM) : characterjzation of horizpiitally transferred genes with emphasis on the E. call O157 genome"Gene. 276. 89-99 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukagawa, T., Regnier, V, and Ikemura, T.: "Creation and characterization of temperature-sensitive CENP-C mutants in vertebrate cells."Nucleic Acids Researd. 29. 3796-3803 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukagawa, T., Mikami, Y, Nishihashi, A, Regnier, V., Haraguehi, T, Hiraoica, Y, Sugata, N., Todokoro, K., Brown, W., and Ikemura, T: "CENP-H, a constitutive centromere component, is required for centromere targeting of GENP-C in vertebrate cells."The BMBO Journal. 20. 4603-4617 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okamura, A., Pendon, C, Valdivia, M. M., Ikemura, T. and Fukagawa, T.: "Gene structure, chromosomal localization and immunolocalization of chicken centromere proteins GENP-C and ZW10."Geney. 262. 283-290 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Shina, T., Ando, A, Suto, Y, Kasai, F., Shigenari, A, Takishima, N., Kikkawa, E., Iwata, K., Kuwano, Y, Kitamura, Y, Watsuzawa, Y, Sano, K., Nogami, M., Kawata, H., Li, S., Eukuzumi, Y, Yamazaki, M., Tashiro, H., tamiya, G, Kohda, A, Okumura, K., Ikemura, T., Soeda, E., Mizuki, N., Kimura, M., Bahram, S., and Inoko, H.: "Genoinic anatomy of apremier major histocompatibihty complex paralogous region on chromosome Iq21-q22"Genome Research. 11. 7879-802 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] OhnO M., Tenzen, T.. Watanabe, Y, Yamagata, T, Kan'aya, S., Ikemura,: "Non-B DNA structures spatially and sequence-specifically associated with individual centromeres in the human interphase nucleus."Chromosomes Today. 13. 57-69 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nogami, M., Nogami, O., Kagotani, K., Taguchi, H., Ikemura, T. and Okumura, K: "Intranuclear arrangement of human chromosome 12 correlates to large-scale replication domains."Chrotnosoma. 108. 514-522 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Watanabe, Y, Tenzen, T., Nagasaka, Y, Iniko, H., Ikemura, T.: "Replication timing of the human X-inactivation center (XIC) region : correlation with chromosome bands."Gene. 252. 163-172 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nogami, M., Kohda, A, Taguchi, H., Nakao, M., Ikemuraj T., Okumura, K: "Relative locations of the centromere and imprinted SNKPN gene'within chromosome 15 territories during the cell cycle in HL60 cells."Journal of Cell Scienc. 113. 2157-2165 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y.Watanabe: "Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q : disease-related genes in timing-switch regions"Human Molecular Genetics. 11. 13-21 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Fukagawa: "CENP-H, a constitutive centromere component, is required for centromere targeting of CENP-C in vertebrate cells"The EMBO Journal. 20. 4603-4617 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Fukagawa: "Creation and characterization of temperature-sensitive CENP-C mutants in vertebrate cells"Nucleic Acids Research. 29. 3796-3803 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] A.Okamura: "Gene Structure, chromosomal localization and immunolocalization of chicken centromere proteins CENP-C and ZW10"Gene. 262. 283-290 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Shina: "Genomic anatomy of a premier major histocompatibility complex paralogous region On chromosome 1q21-q22"Genome Research. 11. 789-802 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Kanaya: "Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM) : characterization of horizontally transferred genes with emphasis on the E. coli O157 genome"Gene. 276. 89-99 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 岡村淳: "Gene structure, chromosomal localization and immunolocalization of chicken centromere proteins CENP-C and ZW10."Gene. 262. 283-290 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 中村保一: "Codon usage tabulated from international DNA sequence databases : status for the year 2000."Nucleic Acids Research. 28. 292 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 大野みずき: "Non-B DNA structures spatially and sequence-specifically associated with individual centromeres in the human interphase nucleus."Chromosomes Today. 13. 57-69 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 野上正弘: "Intranuclear arrangement of human chromosome 12 correlates to large-scale replication domains"Chromosoma. 108. 514-522 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 野上正弘: "Relative locations of the centromere and imprinted SNRPN gene within chromosome 15 territories during the cell cycle in HL60 cells"Journal of Cell Science. 113. 2157-2165 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 渡辺良久: "Replication timing of the human X-inactivation center (XIC) region : correlation with chromosome bands."Gene. 252. 163-172 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 上村隆俊: "Temporal and spatial localization of novel nuclear protein NP95 in mitotic and meiotic cells."Cell Structure and Function. 25. 149-159 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 金谷重彦: "Distribution of polypurine/polypyrimidine tract sequences in the human MHC region and their possible functions."Major Histocompatibillty Complex, Springer-Verlag Berlin Heidelberg New York Tokyo. 13 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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