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Genome rearrangements and gene regulation in higher plants

Research Project

Project/Area Number 12440213
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 遺伝
Research InstitutionNatiomal Institute of Basic Biology

Principal Investigator

IIDA Shigeru  Okazaki National Research Institutes National Institutes for Basic Biology, Professor, 基礎生物学研究所, 教授 (30012777)

Co-Investigator(Kenkyū-buntansha) HOSONO Atsushi  Okazaki National Research Institutes National Institutes for Basic Biology,Research Associate, 基礎生物学研究所, 助手 (80312205)
TERADA Rie  Okazaki National Research Institutes National Institutes for Basic Biology,Research Associate, 基礎生物学研究所, 助手 (30137799)
稲垣 善茂  岡崎国立共同研究機構, 基礎生物学研究所, 助手 (50280764)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥15,400,000 (Direct Cost: ¥15,400,000)
Fiscal Year 2001: ¥5,900,000 (Direct Cost: ¥5,900,000)
Fiscal Year 2000: ¥9,500,000 (Direct Cost: ¥9,500,000)
KeywordsMorning glories / Rice / Mutable alleles / Transposons / genome dynamism / Recombination / Gene regulation / DNA rearrangements / マルバアサガオ / 相同組換え / ジーンサイレンシング
Research Abstract

The Japanese morning glory (lpomoea nil) displaying blue flowers has an extensive history of genetic and physiological studies. A number of its spontaneous mutants related to the flower colors have been isolated, and several lines of evidence indicate that an En/Spm-related transposable element Tpn 1 and its relatives are major sources of these spontaneous mutations. Indeed, many flower color mutants including white flower mutants are caused by integration of Tpn 1-related non-autonomous elements. One of them is a purple-mutable allele conferring purple flowers with blue spots and sectors. The purple gene was identified to encode a vacuolar Na^+/H^+ exchanger that is responsible for increase vacuolar pH for blue flower coloration.
The mutable flaked line of the common morning glory (Ipomoea purpurea) displays white flowers with colored flakes, and the flaked mutation is caused by the insertion of a transposable element Tip 100 into the CHS-D gene for anthocyanin biosynthesis. The 3.9 kb Tip 100 element belongs to the AciDs family. We examined whether Tip 100 is an autonOmous element capable of transposition in heterologous tobacco plants. The intact Tip 100 element was able to excise from its original position in an introduced vector and to reinsert into new sites in the tobacco genome, whereas its internal deletion derivative was not. Based on these results, we concluded that Tip 100 is an autonomous element.
The modification of targeted chromosomal genes through homologous recombination is a powerful tool of reverse genetics for characterizing gene functions. We are trying to develop a procedure for targeted gene disruption by homologous recombination in the single locus gene Waxy of rice. A transgenic rice plant having a targeted gene disrupted by a transgene was isolated, which appears to be a heterozygote with only one copy of the integrated transgene in its genome.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] K.Shiokawa: "The functional expression of the CHS-D and CHS-E genes of the common morning glory (Ipomoea purpurea) in Escherichia coil and characterization of their gene products"Plant Biotech.. 17. 203-210 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A.Hoshino: "Gene duplication and mobile genetic elements in the morning glories"Gene. 265. 1-10 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S.Fukada-Tanaka: "Simplified transposon display (STD) : a new procedure for isolation of a gene tagged by a transposable element belonging to the Tpn1 family in the Japanese morning glory"Plant Biotech.. 18. 143-149 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Yamaguchi: "Genes encoding the vacuolar Na^+/H^+ exchanger and flower coloration"Plant Cell Physiol.. 42. 451-461 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] N.Ishikawa: "The transposon Tip100 from the common morning glory is an autonomous element that can transpose in tobacco plants"Mol. Gen. Genet.. 266. 732-739 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Fukada-Tanaka: "Colour-enhancing protein in blue petals"Nature. 407. 581 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K. Shiokawa: "The functional expression of the CHS-D and CHS-E genes of the common morning glory (Ipomoea purpurea) inEscherichia coli and characterization of their gene products."Plant Biotech. 17. 203-210 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hoshino: "Gene duplication and mobile genetic elements in the morning glories."Gene. 265. 1-10 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Fukada-Tanaka: "Simplified transposon display (STD): a new procedure for isolation of a gene tagged by a transposable element belonging to the Tpn1 family in the Japanese morning glory."Plant Biotech. 18. 143-149 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Yamaguchi: "Genes encoding the vacuolar Na+/H+ exchanger and flower coloration."Plant Cell Plrysio. 42. 451-461 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] N. Ishikawa.: "The transposes TiplOO from the common morning glory is an autonomous element that can transpose in tobacco plants."Mol. Gen. 266. 732-739 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A.Hoshino: "Gene duplication and mobile genetic elements in the morning glories."Gene. 265. 1-10 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Fukada-Tanaka: "Simplified transposon display (STD) : a new procedure for isolation of a gene tagged by a transposable element belonging to the Tpnl family in the Japanese morning glory"Plant Biotech.. 18. 143-149 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Yamaguchi: "Genes encoding the vacuolar Na+/H+ exchanger and flower coloration"Plant Cell Physiol.. 42. 451-461 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Toki: "Acylated pelargonidin 3-sophoroside-5-glucosides from the flowers of the Japanese morning glory cultivar 'Violet'"Heterocycles. 55. 1241-1248 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Toki: "A novel acylated pelargonidin 3-sophoroside-5-glucosides from greyish-purple flowers of the Japanese morning glory"Heterocycles. 55. 2261-2267 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] N.Ishikawa: "The transposon Tip1OO from the common morning glory is an autonomous element that can transpose in tobacco plants"Mol. Gen. Genet.. 266. 732-739 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 飯田 滋 他: "植物が判る。アエラムック(AERA MOOK)"朝日新聞社. 176 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Fukada-Tanaka: "Colour-enhancing protein in blue petals."Nature . 407. 581 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Kojima: "Direct isolation of differentially expressed genes from a specific chromosome region of common wheat Application of the amplified fragment length polymorphism-based mRNA fingerprinting (AMF) method in combination with a deletion line of wheat."Mol.Gen.Genet.. 263. 635-641 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] A.Hasebe: "The novel insertion sequences IS1417, IS1418 and IS1419 from Burkholderia glumae and their strain distribution."Plasmid. 44. 44-53 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Shiokawa: "The functional expression of the CHS-D and CHS-E genes of the common morning glory (Ipomoea purpurea) in Escherichia coli and characterization of their gene products."Plant Biotech.. 17. 203-210 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] A.Hoshino: "Gene duplication and mobile genetic elements in the morning glories."Gene. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] S.Fukada-Tanaka: "Simplified transposon display (STD): a new procedure for isolation of a gene tagged by a transposable element belonging to the Tpn1 family in the Japanese morning glory."Plant Biotech.. (in press). (2001)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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