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Construction of highly condensed protein/peptide library on micro-reactor array

Research Project

Project/Area Number 12450332
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物・生体工学
Research InstitutionNagoya University

Principal Investigator

NAKANO Hideo  Grad.Sch.Bioagri.Sci.,Nagoya Univ.Associate Professor, 大学院・生命農学研究科, 助教授 (00237348)

Co-Investigator(Kenkyū-buntansha) TAMIYA Eiichi  Grad.Sch.Material Sci.,JAIST Professor, 材料科学研究所, 教授 (60179893)
YAMANE Tsuneo  Grad.Sch.Bioagri.Sci.,Nagoya Univ.Professor, 大学院・生命農学研究科, 教授 (70026102)
Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥14,700,000 (Direct Cost: ¥14,700,000)
Fiscal Year 2002: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2001: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2000: ¥9,400,000 (Direct Cost: ¥9,400,000)
Keywordscell-free protein synthesis / protein library / single-molecule PCR / micro-chamber array / lipase / GFP / high-throughput screening / antibody / ライブラリー / ビーズ / 均一性 / 蛍光特性 / マイクロアレイ / 蛍光蛋白質 / PCR / 一本鎖抗体 / ハイスループット
Research Abstract

Herein we have developed a novel protein library system termed SIMPLEX : single-molecule PCR linked in vitro expression combining PCR amplification of single DNA molecule diluted in a well and cell-free protein synthesis. Use of single primer amplification and hot-startable DNA polymerase enabled a single step single-molecule PCR. The obtained protein library by SIMPLEX has been demonstrated to be highly uniform. The uniformity was actually much higher than that obtained by a conventional in vivo system. Also multi-molecule PCR in a well has been shown to be possible. These results have demonstrated that SIMPLEX can provide a high-throughput method for the construction and screening of protein library. Moreover, protein could be synthesized on a micro-chamber array with the concentration of 10,000/cm^2, which will lead the construction of highly condensed protein library.
In addition, in vitro combinatorial mutagenesis was also developed to demonstrate that combinatorial mutation in a specific region of protein selected based on its 3D structure is effective to modulate or improve some properties of proteins.

Report

(4 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (25 results)

All Other

All Publications (25 results)

  • [Publications] Nakano, H. et al.: "Single-step single-molecule PCR of DNA with a homo-priming sequence using a single primer and hot-startable DNA polymerase"Journal of Bioscience and Bioengineering. 90・4. 456-458 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Jiang et al.: "Expression of Fab fragment of catalytic antibody 6D9 in an Escherichia coli in vitro coupled transcription/translation system"FEBS Letters. 514. 290-294 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakano et al.: "In vitro combinatorial mutagenesis of the 65^<th> and 22^<nd> position of the green fluorescent protein of Aequarea Victoria"Biotechnology and Bioprocess Engineering. 7. 311-315 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Koga et al.: "In vitro construction and screening of a Burkholderia cepacia lipase library using single-molecule PCR and cell-free protein synthesis"Journal of Bioscience and Bioengineering. 94・1. 84-86 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Rungpragayphan et al.: "High-throughput, cloning-independent protein library construction by combining single-molecule DNA amplification with in vitro expression"Journal of Molecular Biology. 318. 395-405 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Rungpragayphan et al.: "PCR-linked in vitro expression : A novel system for high-throughput construction and screening of protein libraries"FEBS letters. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yang, et al.: "Modifying the chain-length selectivity of the lipase from Burkholderia cepacia KWI-56 through in vitro combinatorial mutagenesis in the substrate-binding site"Protein Engineering. 15. 147-152 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakano H, Kobayashi K, Ohuchi S, Sekiguchi S, Yamane T: "Single-Step Single-Molecule PCR of DNA with a homo-priming sequence using a single primer and hot-startable DNA polymerase"J Biosci Bioeng. 90. 456-458 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Jiang X, Ookubo Y, Fujii I, Nakano H, Yamane T: "Expression of Fab fragment of catalytic antibody 6D9 in an Escherichia coli in vitro coupled transcription/translation system"FEBS Lett. 514. 290-294 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Koga Y, Kobayashi K, Yang J, Nakano H, Yamane T: "In vitro construction and screening of a Burkholderia cepacia lipase library using single-molecule PCR and cell-free protein synthesis"J Biosci Bioeng. 94. 84-86 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakano H., Okumura R, Goto C, Yamane T: "In vitro combinatorial mutagenesis of the 65^<th> and 22^<nd> position of the green fluorescent protein of Aequarea Victoria"Biotechnol Bioprocess Eng. 7. 311-315 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Rungpragayphan S, Kawarasaki Y, Imaeda T, Kohda K,Nakano H, Yamane T: "High-throughput, cloning-independent protein library construction by combining single-molecule DNA amplification with in vitro expression"J Mol Biol. 318. 395-405 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yang J, Koga Y, Nakano H, Yamane T: "Modifying the chain-length selectivity of the lipase from Burkholderia cepacia KWI-56 through in vitro combinatorial mutagenesis in the substrate-binding site"Protein Eng. 15. 147-152 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Rungpragayphan S, Nakano H, Yamane T: "PCR-linked in vitro expression : A novel system for high-throughput construction and screening of protein libraries"FEBS lett in press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Jiang et al.: "Expression of Fab fragment of catalytic antibody 6D9 in an Escherichia coil in vitor coupled transcription/translation system"FEBS Letters. 514. 290-294 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Nakano et al.: "In vitro combinatorial mutagenesis of the 65^<th> and 22^<nd> position of the green fluorescent protein of Aequarea Victoria"Biotechnology and Bioprocess Engineering. 7. 311-315 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Koga et al.: "In vitro construction and screening of a Burkholderia cepacia lipase library using single-molecule PCR and cell-free protein synthesis"Journal of Bioscience and Bioengineering. 94,1. 84-86 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Rungpragayphan et al.: "High-throughput, cloning-independent protein library construction by combining single-molecule DNA amplification with in vitro expression"Journal of Molecular Biology. 318. 395-405 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Rungpragayphan et al.: "PCR-linked in vitro expressions : A novel system for high-throughput construction and screening of protein libraries"FEBS letters. (印刷中).

    • Related Report
      2002 Annual Research Report
  • [Publications] Nakano, H. et al.: "Single-step single-molecule PCR of DNA with a homo-priming sequence using a single primer and hot-startable DNA polymerase"Journal of Bioscience and Bioengineering. 90(4). 11-15 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] 中野秀雄: "Good-bye"大腸菌":無細胞タンパク質合成系の挑戦"バイオサイエンスとバイオインダストリー. 58(8). 11-15 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yang, J. et al.: "Modifyin the chain-lenghty selectivity of the lipase form Burkhoeria cepacia KWI-56 through in vitro conbinatorial mutagenesisi in the substrate binding site"Protein Engineering. 15(2). 101-106 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Rungpragayphan, S. et al.: "High-throughput, cloning-independent protein library construction by combining single-molecule DNA amplification with in vitro expression"Journal of Molecular Biology. (in press).

    • Related Report
      2001 Annual Research Report
  • [Publications] Nakano,H. et al.: "Single-step single-molecule PCR of DNA with a homo-priming sequence using a single primer and hot-startable DNA polymerase"Journal of Bioscience and Bioengineering. 90(4). 456-458 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 中野秀雄: "Good-bye"大腸菌":無細胞タンパク質合成系の挑戦"バイオサイエンスとバイオインダストリー. 58(8)). 11-15 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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