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Functional analysis of BmClock, BmCry-α, and BmCry-β, circadian clock genes found in the genome of the silkworm, Bombyx mori

Research Project

Project/Area Number 12460025
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 蚕糸・昆虫利用学
Research InstitutionThe University of Tokyo

Principal Investigator

SHIMADA Toru  Graduate School of Agricultural and Life Sciences, The University of Tokyo, Associate Processor, 大学院・農学生命科学研究科, 助教授 (20202111)

Co-Investigator(Kenkyū-buntansha) MITA Kazuei  National Institute of Agrobiological Sciences, Genome Research Group, Chief Researcher (Researcher), サブグループリーダー(研究職) (30159165)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥14,400,000 (Direct Cost: ¥14,400,000)
Fiscal Year 2001: ¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2000: ¥10,900,000 (Direct Cost: ¥10,900,000)
KeywordsBombyx mori / Circadian clock / Photoperiodism / EST / Genome analysis / Transcription factors / Drosophila / DNA microarray
Research Abstract

An orthologue for clock (BmClock), a Drosophila circadian clock gene, was found in the Bombyx mori EST database. The nucleotide sequence of the BmClock cDNA was determined. The full length cDNA was 7521 bp in length and encoded a putative 585 amino acid sequence, which contained three conserved domains, a basic helix-loop-helix, PAS-1, and PAS-2. BmClock mRNA was expressed with circadian rythmicity, and the mRNA peak was observed in the evening.
We also found an orthologue (BmCry-α) of mammalian cryptochrome genes in the B. mori EST database. The cDNA was 4509 bp in length and encoded a complete 730-amino acid protein. The aa sequence conserved the domains for binding to DNA, MTHF, and FAD, respectively. Another kind of cryptochrome-like sequence was also found in the ESTs, it was an orthologue of the Drosophila cryptochrome gene. The length of cDNA was 1587 bp. It encoded 308 amino acid residues. RT-PCR analyzes of the brains demonstrated that both two chryptochrome mRNAs are expressed in a circadian fashion, and their peak appeared in the night. Another kind of cryptochrome (BmCry-γ) has just been found i as an EST. Additionally a member of the DNA 6-4 photolyase gene family (including cryptochromes) was found.
The cDNA microarray was utilized to find circadian rhythm in the larval fat body of B. mori. We found 11 genes that expressed mRNAs in the circadian fashion. On the other hand, we also did a crossing experiment between a polyvoltine strain and a bivoltine strain, and found that not only sex-linked gene but also autosomal gene(s) regulates the photoperiodism.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] Hiroaki Abe, Fumi Ohbayashi, Toshiyuki Sugasaki, Mariko Kanehara, Tomoko Terada, Toru Shimada, Shinya Kawai, Kazuei Mita, Yasushi Kanamori, Masa-Toshi Yamamoto, Toshikazu Oshiki: "Two novel Pao-like retrotransposons (Kamikaze and Yamato) of the silkworm Bombyx mori and B. mandarina and the common structural feature of Pao-like elements"Molecular and General Genetics. (印刷中). (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kazuhiro Okano, Toru Shimada, Kazuei Mita, Susumu Maeda: "Comparative expressed-sequence-tag analysis of differential gene expression profiles in BmNPV-infected BmN cells"Virology. 282(2). 348-356 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Xia Zhao, Kazuei Mita, Toru Shimada, Kazuhiro Okano, Guo-Xing Quan, Eiji Kanke, Hideki Kawasaki.: "Isolation and expression of an ecdysteroid-inducible neutral endopeptidase 24. 11-like gene in wing discs of Bombyx mori"Insect Biochemistry and Molecular Biology. 31(12). 1213-1219 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fumi Ohbayashi, Masataka G. Suzuki, Toru Shimada: "Sex determination in Bombyx mori"Current Science (Bangalore). special issue(印刷中). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 嶋田 透(2001): "ETSドメイン"生体の科学. 52巻5号. 377-378 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 嶋田 透: "カイコのゲノム研究の意義,現状および展望[1]&[2]"農業および園芸. 75巻9号&75巻10号. 991-998, 1112-1116 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fumi Ohbayashi, Masataka G. Suzuki and Toru Shimada: "Sex determination in Bombyx mori"Current Science (Bangalore), special issue. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Xia Zhao, Kazuei Mita, Toru Shimada, Kazuhiro Okano, Guo-Xing Quan, Eiji Kanke and Hideki Kawasaki: "Isolation and expression of an ecdysteroid-inducible neutral endopeptidase 24. 11-like gene in wing discs of Bombyx mori"Insect Biochemistry and Molecular Biology. 31(12). 1213-1219 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masahisa Takeda, Kazuei Mita, Guo-Xing Quan, Toru Shimada, Kazuhiro Okano, Eiji Kanke and Hideki Kawasaki: "Mass isolation of cuticle protein cDNAs from wing wing discs of Bombyx mori and their characterizations"Insect Biochemistry and Molecular Biology. 31(10). 1019-1028 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kazuhiro Okano, Toru Shimada, Kazuei Mita and Susumu Maeda: "Comparative expressed-sequence-tag analysis of differential gene expression profiles in BmNPV-infected BmN cells"Virology. 282(2). 348-356 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Shogo Matsumoto, Toyoshi Yoshida, Norihiro Yokoyama, Masashi Iwanaga, Seizo Koshiba, Takanori Kigawa, Hiroshi Hirota, Shigeyuki Yokoyama, Kazuhiro Okano, Kazuei Mita, Toru Shimada and Sadahiro Tatsuki: "Characterization of acyl-CoA-binding protein (ACBP) in the pheromone gland of the silkworm, Bombyx mori"Insect Biochemistry and Molecular Biology. 31(6-7). 603-609 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Guo-Xing Quan, Kazuei Mita, Kazuhiro Okano, Toru Shimada, Nanako Ugajin, Zhao Xia, Noriko Goto, Eiji Kanke, and Hideki Kawasaki: "Isolation and expression of the ecdysteroid-inducible angiotensin-converting enzyme-related gene in wing discs of Bombyx mori"Insect Biochemistry and Molecular Biology. 31(1). 97-103 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kenichi Mikitani, Toshiyuki Sugasaki, Toru Shimada, Masahiko Kobayashi, and Jan Ake Gustafsson: "The chitinase gene of the silkworm, Bombyx mori, contains a novel Tc-like transposable element"Journal of Biological Chemistry. 275(48). 37725-37732 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hiroaki Abe, Fumi Ohbayashi, Toru Shimada, Toshiyuki Sugasaki, Shinya Kawai, Kazuei Mita, Toshikazu Oshiki: "Molecular structure of a novel gypsy-Ty3-like retrotranspon, Kabuki and nested retrotransposable elements on the Wchromosome of the silkworm, Bombyx mori"Molecular and General Genetics. 263(6). 916-924 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kazuhiro Okano, Toru Shimada, Kazuei Mita, Susumu Maeda: "comparative expressed-sequence-tag analysis of differential gene expression profiles in BmNPV-infected BmN cells"Virology. 282(2). 348-356 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Xia Zhao, Kazuei Mita, Toru Shimada, Kazuhiro Okano, Guo-Xing Quan, Eiji Kanke, Hideki Kawasaki: "Isolation and expression of an ecdysteroid-inducible neutral endopeptidase 24.11-like gene in wing discs of Bombyx mori"Insect Biochemistry and Molecular Biology. 31(12). 1213-1219 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Fumi Ohbayashi, Masataka G.Suzuki, Toru Shimada: "Sex determination in Bombyx mori"Current Science (Bangalore). special issue(印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 嶋田 透(2001): "ETSドメイン"生体の科学. 52巻5号. 377-378 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hiroaki Abe,Fumi Ohbayashi,Toshiyuki Sugasaki,Mariko Kanehara,Tomoko Terada,Toru Shimada,Shinya Kawai,Kazuei Mita,Yasushi Kanamori,Masa-Toshi Yamamoto,Toshikazu Oshiki: "Two novel Pao-like retrotransposons (Kamikaze and Yamato) of the silkworm Bombyx mori and B.mandarina and the common structural feature of Pao-like elements."Molecular and General Genetics. (印刷中). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 嶋田透: "カイコのゲノム研究の意義,現状および展望[1]."農業および園芸. 75巻9号. 991-998 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 嶋田透: "カイコのゲノム研究の意義,現状および展望[2]."農業および園芸. 75巻10号. 1112-1116 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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