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Network for the localization of membrane and secretory proteins in Bacillus srubtilis.

Research Project

Project/Area Number 12460037
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionUniversity of Tsukuba

Principal Investigator

YAMANE Kunio  Tsukuba University, Institute of Biological Sciences, Professor, 生物科学系, 教授 (20013336)

Co-Investigator(Kenkyū-buntansha) NAKAMURA Kouji  Tsukuba University, Institute of Biological Sciences, Associate Professor, 生物科学系, 助教授 (40212097)
Project Period (FY) 2000 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥10,700,000 (Direct Cost: ¥10,700,000)
Fiscal Year 2003: ¥2,800,000 (Direct Cost: ¥2,800,000)
Fiscal Year 2002: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2001: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2000: ¥2,700,000 (Direct Cost: ¥2,700,000)
KeywordsBacillus subtilis / Protein secretion machinery / SRP / SecA / Membrane proteins / Proteome / タンパク質分泌機構 / on membrane digestion法 / PVDFメンフレン / MARDI-TOF MS / 分泌タンパク質 / タンパク質の局在化 / ネットワーク / シグナルペプチド
Research Abstract

Bacillus subtilis and related bacteria has the ability to produce high levels of extracellular enzymes and they have been used as producers of the enzymes in industries. To analyze the molecular mechanism for the protein secretion machinery to produce the enzymes and a possible network between the protein secretion and the localization of proteins in the cell membrane, we have studied as follows
1)Protein composition and function of each component of signal recognition particle (SRP) that targets the presecretory proteins to the cell membrane
2)Interaction between FtsY, a receptor of SRP, and Ffh, a component of SRP
3)Comprehensive analysis of membrane proteins and their relation to the protein secretory machinery to localize the proteins into the cell membrane

Report

(5 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (38 results)

All Other

All Publications (38 results)

  • [Publications] Kumano, miyuki: "Lincomycin-resistant mutations focused at two regions immediately downstream to the -10 of lmr promoter cause overexpression of a putative multidrug efflux pump in Bacilus subtilis mutants."Antimicrobial Agents and Chemotherapy. 47. 432-435 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Watanabe Shouji: "Requirement of mannitol-1-phosphate dehydrogenase (MtlD) for mannitol and glucitol assimilation in Bacillus subtilis : Possible co-operation of mtl and gut operons for glucitol assimilation. Functional genomics of Gram-positive microorganism."J.Bacteriol.. 185. 4916-4824 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kobayashi, Kazuo: "Essetial Bacillus subtilis genes."Proc.Natl.Acad.Sci.USA.. 100. 4678-4683 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Bunai, Keigo: "Proteomic analysis of acrylamide gel separated proteins immobilized on polyvinylidene difluoride membrane following proteolytic digestion in the presence of 80% acetonitrile."proteomics. 3. 1738-1749 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Bunai Keigo: "Profiling of comprehensive expression analysis of ABC tansporter solute-binding proteins of Bacillus subtilis membrane based on a proteomic approach."Electrophoresis. 25. 141-155 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Haga Keiko: "Effects of essential carbohydrate/aromatic stacking interaction wit Tys100 and Phe259 on substrate binding of cyclodextrin glycosyltransferase from Alkalophilic Bacillus sp.1011"J.Biochem. 134. 881-891 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 武内桂吾, 山根國男: "タンパク質の一生"共立出版. 2 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyuki Kumano, Masaya Fujita, Kouji Nakamura, Makiko Murata, Reiko Ohki, Kunio Yamane: "Lincomycin-resistant mutations focused at two regions immediately downstream to the -10 of lmr promoter cause overexpression of a putative multidrug efflux pump in Bacilus subtilis mutants"Antimicrobial Agents and Chemotherapy. 47. 432-435 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] K.Kobayashi, S.D.Ehrlich, A.Albertini, 【triple bond】K.Yamane【triple bond】, N.Ogasawara: "Essetial Bacillus subtilis genes"Proc.Natl.Acad.Sci.USA.. 100. 4678-4683 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shouji Watanabe, Miyuki Hamano, Hiroshi Kakeshita, Keigo Bunai, Shigeo Tojo, Hirotake Yamaguchi, Yasutaro Fujita, Sui-Lum Wong, Kunio Yamane.: "Mannitol-1-phosphate dehydrogenase (MtlD) is required for mannitol and glucitol assimilation in Bacillus subtilis : Possible co-operation of mtl and gut operons"J.Bacteriol.. 185. 4816-4824 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Keigo Bunai, Manabu Nozaki, Miyuki Hamano, Shinya Ogane, Taro Inoue, Tadashi Nemoto, Hiroshi Nakanishi, Kunio Yamane.: "Proteomic analysis of acrylamide gel separated proteins immobilized on Polyvinylidene difluoride membrane following proteolytic digestion in the presence of 80% acetonitrile"Proteomics. 3. 1738-1749 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Keiko Haga, Ryuta Kanai, Osamu Sakamoto, Masanobu Aoyagi, Kazuaki Harata, Kunio Yamane.: "Effects of essential carbohydrate/aromatic stacking interaction wit Tys100 and Phe259 on substrate binding of cyclodextrin glycanotransferase from Alkalophilic Bacillus sp. 1011"J.Biochem. 134. 881-891 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Keigo Bunai, Masanori Ariga, Taro Inoue, Manabu Nozaki, Shinya Ogane, Hiroshi Kakeshita, Tadashi Nemoto, Hiroshi Nakanishi, Kunio Yamane.: "Profiling of comprehensive expression analysis of ABC tansporter solute-binding proteins of Bacillus subtilis membrane based on a proteomic approach"Electrophoresis. 25. 141-155 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kumano, Miyuki: "Lincomycin-resistant mutations focused at two regions immediately downstream to the -10 of lmr promoter cause overexpression of a putative multidrug efflux pump in Bacilus subtilis mutants"Antimicrobial Agents and Chemotherapy. 47. 432-435 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Watanabe Shouji: "Requirement of mannitol-1-phosphate dehydrogenase (MtlD) for mannitol and glucitol assimilation in Bacillus subtilis : Possible co-operation of mtl and gut operons for glucitol assimilation. Functional genomics of Gram-positive microorganism"J.Bacteriol.. 185. 4816-4824 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kobayashi, Kazuo: "Essetial Bacillus subtilis genes"Proc.Natl.Acad.Sci.USA. 100. 4678-4683 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Bunai Keigo: "Proteomic analysis of acrylamide gel separated proteins immobilized on polyvinylidene difuloride membrane following proteolytic digestion in the presence of 80% acetonitrile"Proteomics. 3. 1738-1749 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Bunai Keigo: "Profiling of comprehensive expression analysis of ABC transporter solute-binding proteins of Bacillus subtilis membrane based on a proteomic approach"Electrophoresis. 25. 141-155 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Haga Keiko: "Effects of essential carbohydrate/aromatic stacking interaction wit Tys100 and Phe259 on substrate binding of cyclodextrin glycanotransferase from Alkalophilic Bacillus sp.1011"J.Biochem.. 134. 881-891 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Ando: "Expression of a small RNA, BS203 RNA, from the yocI -yocJ intergenic region of Bacillus subtilis genome"FEMS Microbiol. Lett.. 207. 29-33 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Hosoya: "Identification and characterization of the Bacillus subtilis D-glucarate/ galactarate utilization operon ycbCDEFGHJ"FEMS Microbiol. Lett.. 210. 193-199 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Suzuma: "Identification and characterization of novel small RNAs in aspS-YrvM intergenic region of Bacillus subtilis"Microbiology. 148. 2591-2598 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Kumano: "Linocomycin-resistant mutations focused at two regions immediately downstream to the -10 of lmr promoter cauae overexpresion of a putative multidrug efflux pumpin Bacilus subtilis mutants"Antimicrobial Agents and Chemotherapy. 47. 432-435 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Murata: "Multidrug resistant phenotype of Bacillus subtilis spontaneous mutants isolated in the presence of puromycin and lincomycin"Can. J. Microbiol.. 49. 1-7 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] K.Bunai: "Proteomic analysis of acrylamide gel separated proteins immobilized on polyvinylidene difluoride membrane following proteolytic digestion in the presence of 80% acetonitrile"Proteomics. 3-9(in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 山根國男: "ポストシークエンスタンパク質実験法"東京化学同人. 22 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hiroshi Kakeshita: "Effect of Depletion of FtsY on spore morphology and the protein composition of the spore coat layer Bacillus subtilis"FEMS Microbiol. Lett.. 195. 41-46 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ryuta Kanai: "Crystal strucure of cyclodextrin glucanotransferase from an alkalophilic Bacillus sp.1011 complexed with 1-deoxinojirimycin at 2.0Å resolution"J.Biochemistry. 129. 593-598 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kouji Nakamura: "Minimal functional structure of Eschericia coli 4.5S RNA required for binding EF-G"J.Biol.Chem.. 276. 22844-22849 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yoshinari Ando: "Expression of a small RNA,BS203 RNA,from the yocI-yocJ intergenic region of Bacillus subutilis genome"FEMS Microbiol.Lett.. 197(印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 山根國男: "分子シャペロンによる細胞機能制御"シュプリンガーフェアラーク東京株式会社. 2 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Isao Hirose: "Proteome analysis of Bacillus subtilis extracellular proteins : a two-dimensional protein electrophorotic study."Microbiology. 146. 65-75 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] N.Ishii: "Crystalstructure of asparagine 233-replaced cyclodextrin gluanotrans-frage from an alkalophilic Bacilius sp.11011 determined at 1.9A resolution."J.Mol.Recog.. 13. 35-43 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] N.Ishii: "Crystal structure of alkalophilic asparagine 233-replaced cyclodexrin glucano-transferase complexed with an inhibitor,acarbose, at 2.0 A resolution"J.Biochem.. 127. 383-391 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 山根國男: "枯草菌における有用菌体外酵素の生産制御・分泌経路およびゲノムの解析と応用。"日本農芸化学会誌. 74. 871-883 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Kakeshita: "Expression of the FtsY gene, encoding a homologue of the 〆-subunit of mammalian signal recognition particle receptor, is controlled by different promoters in vegetative and sporulating cells of Bacillus subtilis."Microbiology. 146. 2595-263 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Kakeshita: "Effect of Depletion of FtsY on spore morphology and the protein composition of the spore coat layer in Bacillus subtilis."FEMS Microbiol.Lett.. 195. 41-46 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 中山建男: "枯草菌プロテオーム解析。実験医学別冊。ポストゲノム時代の実験講座2、プロテオーム解析法。磯辺俊明,高橋信弘編"羊士社. 5 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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