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Design and synthesis of DNA topoisomerase II inhibitors targeting the proton-transfer process

Research Project

Project/Area Number 12470476
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemical pharmacy
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

IIDA Akira  Kyoto University, Graduate School of Pharmaceutical Sciences, Associate Professor, 薬学研究科, 助教授 (40202816)

Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥4,700,000 (Direct Cost: ¥4,700,000)
Fiscal Year 2002: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 2001: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2000: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywordstopoisomerase II / inhibitor / nucleoside / DNA cleeavage complex / molecular design / proton trap / compound library / structure-activity relationship / マイケル付加反応 / 酵素触媒 / ヌクレオチド / プロトン移動 / カテコール / オルトキノン / 切断複合体 / Michael反応
Research Abstract

DNA topoisomerases are nuclear enzymes responsible for biological processes of DNA metabolism such as replication, transcription, recombination and chromosome segregation at mitosis. Therefore, compounds that inhibit these enzymes as the primary cellular target are of special interest since those are promising candidates for anticancer drugs.
Our previous studies demonstrated that the ortho-quinone or catechol moiety in aza-deoxypodophyllotoxin analogues plays a critical role in showing topoisomerase II (topo II) enzyme inhibition, in which proton transport during cutting and resealing of DNA is presumed to be blocked by a small structural unit like ortho-quinone. In this research project, we have aimed at the synthesis and biological evaluation of nucleoside analogues as novel topo II inhibitors that are hybrids with aza-podophyllotoxin analogues. Our synthesis contains a Michael addition reaction of 1, 3-dithianes to chiral butenolide, an equivalent to the deoxyribose moiety of a nucleoside, and a Silyl-Hilbert-Johnson reaction as key reactions. As predicted, ortho-quinone and catechol showed topo II inhibition, while dimethoxy derivative was inactive. In addition to the active nucleosides, it was found that several lactone derivatives lacking a thymine base also inhibited topo II, indicating that a thymine base is not requisite to topo II inhibition. Structure-activity relationship of these lactone derivatives showed that the presence of the TBS group or dithiane moiety in the molecule is essential for topo II inhibition in the case of non-nucleoside derivatives.

Report

(4 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Y.Mizushina et al.: "Three-dimensional structural model analysis of binding site of aninhibitor, lithocholic acid, of both DNA polymerase β and DNA topoisomerase II"J. Biochem.. 130(5). 657-664 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S.Wada et al.: "Triterpene Constituents from the Stem Bark of Pinus luchuensis and their DNA Topoisomerase II Inhibitory Effect"Planta Medica. 67(7). 659-664 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S.Wada et al.: "Screening of Triterpenoids Isolated from Phyllanthus flexuosus for DNA Topoisomerase Inhibitory Activity"J. Nat. Prod.. 64(12). 1545-1547 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A.Iida et al.: "Podophyllotoxin Aza-Analogue, A Novel DNA Topoisomerase II Inhibitor"Chem. Pharm. Bull.. 48(4). 486-489 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Mizushia et al.: "Novel triterpenoids inhibit both DNA polymerase and DNA topoisomerase"Biochem J.. 350. 757-763 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Mizushia et al.: "Structural homology between DNA binding site of DNA polymerase β and DNA topoisomerase II"J. Mol. Biol.. 304. 385-395 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A. Iida, M. Kano, Y. Kubota, K. Koga, K. Tomioka: "Podophyllotoxin aza-Analogue, a novel DNA topoisomerase II inhibitor"Chem. Pharm. Bull. 48 (4). 486-489 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y. Mizushina, A. Iida, K. Ohta, F. Sugawara, K. Sakaguchi: "Novel triterpenoids inhibit both DNA polymerase and DNA topoisomerase"Biochem J. 350. 757-763 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y. Mizushina, F. Sugawara, A. Iida, K. Sakaguchi: "Structural homo logy between DNA binding site of DNA polymerase β and DNA topoisomerase II"J. Mo 1. Biol.. 304. 385-395 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y. Mizushina, F. Sugawara, A. Iida, K. Sakaguchi: "Three-dimensional structural model analysis of binding site of aninhibitor, lithocholic acid, of both DNA polymerase β and DNA topoisomerase II"J. Biochem.. 130 (5). 657-664 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S. Wada, A. Iida, R. Tanaka: "Triterpene constituents from the stem bark of Pinus Iuchuensis and their DNA topoisomerase II inhibitory effect"Planta Medica. 67(7). 659-664 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S. Wada, A. Iida, R. Tanaka: "Screening of triterpenoids isolated from Phyllanthus flexuosus for DNA topoisomerase inhibitory activity"J. Nat. Prod.. 64 (12). 1545-1547 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S. Wada, A. Iida, R. Tanaka: "Triterpenoid cpnstituents isolated from the bark of Abies sachalinensis"J. Nat. Prod.. 65 (12). 1657-1659 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Mizushina et al.: "Three-dimensional structural model analysis of binding site of aninhibitor, lithocholic acid, of both DNA polymerase Β and DNA topoisomerase II"J. Biochem.. 130(5). 657-664 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Wada et al.: "Triterpene Constituents from the Stem Bark of Pinus luchuensis and their DNA Topoisomerase II Inhibitory Effect"Planta Medica. 67(7). 659-664 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Wada et al.: "Screening of Triterpenoids Isolated from Phyllanthus flexuosus for DNA Topoisomerase Inhibitory Activity"J. Nat. Prod.. 64(12). 1545-1547 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] A.Iida et al.: "Podophyllotoxin Aza-Analogue, A Novel DNA Topoisomerase II Inhibitor"Chem. Pharm. Bull.. 48(4). 486-489 (2000)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Mizushia et al.: "Novel triterpenoids inhibit both DNA polymerase and DNA topoisomerase"Biochem J.. 350. 757-763 (2000)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Mizushia et al.: "Structural homology between DNA binding site of DNA polymerase Β and DNA topoisomerase II"J. Mol. Biol.. 304. 385-395 (2000)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Mizushina et al.: "Three-dimensional structural model analysis of binding site of aninhibitor, lithocholic acid, of both DNA polymerase β and DNA topoisomerase II"J.Biochem.. 130(5). 657-664 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Wada et al.: "Triterpene Constituents from the Stem Bark of Pinus luchuensis and their DNA Topoisomerase II Inhibitory Effect"Planta Medica. 67(7). 659-664 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Wada et al.: "Screening of Triterpenoids Isolated from Phyllanthus flexuosus for DNATopoisomerase Inhibitory Activity"J.Nat.Prod.. 64(12). 1545-1547 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] A.Iida et al.: "Podophyllotoxin Aza-Analogue, A Novel DNA Topoisomerase II Inhibitor"Chem.Pharm.Bull.. 48(4). 486-489 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Mizushia et al.: "Novel triterpenoids inhibit both DNA polymerase and DNA topoisomerase"Biochem J.. 350. 757-763 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Mizushia et al.: "Structural homology between DNA binding site of DNA polymerase β and DNA topoisomerase II"J.Mol.Biol.. 304. 385-395 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Mizushina: "Structural homology between DNA binding site of DNA polymerase βand DNA topoisomerase II"J.Mol.Biol. 304. 385-395 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Mizushina: "Novel triterpenoids inhibit both DNA polymerase and DNA topoisomerase"Biochem J.. 350. 757-763 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] A.Iida: "Podophyllotoxin Aza-Analogue, A Novel DNA Topoisomerase II Inhibitor"Chem Pharm.Bull.. 48・4. 486-489 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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