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Studies on three-dimensional structures of the glycolytic enzymes responsible for the lysosomal diseases

Research Project

Project/Area Number 12470486
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionThe University of Tokyo

Principal Investigator

SATOW Yoshinori  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Professor, 大学院・薬学研究科, 教授 (30150014)

Co-Investigator(Kenkyū-buntansha) MIZUTANI Ryuta  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Research Associate, 大学院・薬学研究科, 助手 (70272482)
NOGUCHI Shuji  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Research Associate, 大学院・薬学研究科, 助手 (60237823)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥15,600,000 (Direct Cost: ¥15,600,000)
Fiscal Year 2001: ¥6,600,000 (Direct Cost: ¥6,600,000)
Fiscal Year 2000: ¥9,000,000 (Direct Cost: ¥9,000,000)
KeywordsLysosomal Disease / Fabry Disease / Human α-Galactosidase / X-ray Crystallography / Structural Biology / Three-Dimensional Structure / Genetic Mutation / Hereditary Disease / ファブリ-病 / アセチルガラクトサミニダーゼ
Research Abstract

Fabry disease is an X-linked hereditary disorder of lysosomal α-galactosidase. This enzyme hydrolyzes terminal α galactoside linkages in various glycolipids, and its genetic mutations decrease enzymatic activities which result in deficiencies of glycolipid metabolism and hence accumulates such substrate as glycosphingolipid of globotriaosylceramide in heart and other organs. The molecular lesion of lysosomal α-N-acetylgalactosaminidase causes another form of angiokeratoma. In order to elucidate three-dimensional structural bases of these diseases, both the enzymes have been expressed and subjected to crystallographic studies.
A recombinant of human α-galactosidase was first expressed in the yeast Pichia pastoris that successfully secretes a glycosilated and catalytically active enzyme into a culture broth. Three recombinants for the mutated enzymes were similarly obtained and characterized by biophysical and biochemical analyzes. Crystals of the enzymes both in free forms and in complex … More es with a inhibitor of 1-deoxygalactonojirimycin were obtained. X-ray diffraction data from these crystals were collected using laboratory and synchrotron sources, and analyzed with the molecular replacement method.
The three-dimensional structures thus obtained show that α-galactosidase is homodimeric, consisting of a β-sheet domain and an α/β barrel domain in which the active site is located. The structures of the two recombinants responsible for the variant-form disease indicate that their differences from the structure of the normal enzyme are very small and localized only near the mutated amino acids, and their characterizations indicate that they attain nearly normal levels of the activities but lose their activities rapidly. The structure of the recombinant causing the classical-form disease show that the side chain of the mutated amino-acid blocks the active site and completely hinders the activity. A recombinant of human α-N-acetylgalactosaminidase was similarly expressed, purified, and crystallized. Optimization of qualities of the obtained crystals is in progress so as to elucidate the structure of this enzyme. Less

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (17 results)

All Other

All Publications (17 results)

  • [Publications] K.Murase, R.Mizutani, Y.Satow: "Expression, characterization and crystallization of the Fv fragment of mouse antibody 3B62 from the secondary immune response"Acta Crystallographica. D57. 1703-1705 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] R.Mizutani, S.Miyamoto, Y.Satow: "Mechanism of catalytic reaction by yeast VMA1 endonuclease"SPring-8 Experiment Report. 7. 154-154 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H.Yokoyama, R.Mizutani, Y.Satow, K.Sato, Y.Komatsu, E.Ohtsuka, O.Nikaido: "Crystal structure of DNA(6-4)photoproduct dTT(6-4)TT in complex with the 64M-2 anti-body Fab fragment implies increased antibody-binding affinity by the flanking nucleotides"Acta Crystallographica. D58(印刷中). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] R.Mizutani, S.Nogami, M.Kawasaki, Y.Ohya, Y.Anraku, Y.Satow: "Protein-splicing reaction via a thiazolidine intermediate : Crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides"J. Mol. Biol.. 316. 917-927 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Shiba, S.Harada, H.Sugawara, H.Naitow, Y.Kai, Y.Satow: "Crystallization and preliminary X-ray analysis of a bacterial lysozyme produced by Streptomyces globiporus"Acta Crystallographica. D56. 1462-1463 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Meguro, T.Kashiwagi, Y.Satow: "Crystal structure of the low-humidity form of aspartame sweetner"J. Peptide Research. 56. 97-104 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ken Murase, Ryuta Mizutani, and Yoshinori Satow: "Expression, characterization and crystallization of the Fv fragment of mouse antibody 3B62 from the secondary immune response"Acta Crystallographica. D57. 1703-1705 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ryuta Mizutani, Shunsuke Miyamoto, and Yoshinori Satow: "Mechanism of catalytic reaction by yeast VMA1 endonuclease"SPring-8 Experiment Report. 7. 154 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Yokoyama, R. Mizutani, Y. Satow, K. Sato, Y. Komatsu, E. Ohtsuka, and O. Nikaido: "Crystal structure of DNA (6-4) photoproduct dTT(6-4)TT in complex with the 64M-2 antibody Fab fragment implies increased antibody-binding affinity by the flanking nucleotides"Acta Crystallographica. D58 (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] R. Mizutani, S. Nogami, M. Kawasaki, Y. Ohya, Y. Anraku, and Y. Satow: "Protein-splicing reaction via a thiazolidine intermediate : Crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides"J. Mol. Biol.. 316. 917-927 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Shiba, S. Harada, H. Sugawara, H. Naitow, Y. Kai, and Y. Satow: "Crystallization and preliminary X-ray analysis of a bacterial lysozyme produced by Streptomyces globiporus"Acta Crystallographica. D56. 1462-1463 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Meguro, T. Kashiwagi, and Y. Satow: "Crystal structure of the low-humidity form of aspartame sweetner"J. Peptide Research. 56. 97-104 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ken Murase, Ryuta Mizutani, Yoshinori Satow: "Expression, characterization and crystallization of the Fv fragment of mouse antibody 3B62 from the secondary immune response"Acta Crystallographica. D57. 1703-1705 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ryuta Mizutani, Shunsuke Miyamoto, Yoshinori Satow: "Mechanism of catalytic reaction by yeast VMA1 endonuclease"SPring-8 Experiment Report. 7. 154-154 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Yokoyama, R.Mizutani, Y.Satow, K.Sato, Y.Komatsu, E.Ohtsuka, O.Nikaido: "Crystal structure of DNA(6-4)photoproduct dTT(6-4)TT in complex with the 64M-2 antibody Fab fragment implies increased antibody-binding affinity by the flanking nucleotides"Acta Crystallographica. D58(印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] R.Mizutani, S.Nogami, M.Kawasaki, Y.Ohya, Y.Anraku, Y.Satow: "Protein-splicing reaction via a thiazolidine intermediate : Crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides"J.Mol.Biol.. (印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Shiba,S.Harada,H.Sugawara,H.Naitow,Y.Kai,and Y.Satow: "Crystallization and Preliminary X-ray Analysis of a Bacterial Lysozyme Produced by Streptomyces globiporus"Acta Crystallographica. D56. 1462-1463 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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