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Characterization of low temperature-adapted mutants of enzymes of extreme thermophiles

Research Project

Project/Area Number 12480184
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionTokyo University of Pharmacy and Life Science

Principal Investigator

OSHIMA Tairo  Tokyo University of Pharmacy and Life Science, Faculty of Life Science, Professor, 生命科学部, 教授 (60167301)

Co-Investigator(Kenkyū-buntansha) TAMAKOSHI Masataka  Tokyo University of Pharmacy and Life Science, Faculty of Life Science, Assistant Professor, 生命科学部, 助手 (10277254)
Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥10,200,000 (Direct Cost: ¥10,200,000)
Fiscal Year 2002: ¥3,200,000 (Direct Cost: ¥3,200,000)
Fiscal Year 2001: ¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2000: ¥3,600,000 (Direct Cost: ¥3,600,000)
KeywordsExtreme thermophile / Evolutionary engineering / Temperature adaptation / Isopropylmalate dehydrogenase / Evolutionary biochemistry / 実験室内進化 / 進化分子工学 / 好熱性細菌 / Directed Evolution / 熱安定酵素 / 3-イソプロピルリンゴ酸デヒドロゲナーゼ / 反応速度論 / ランダム変異
Research Abstract

The aim of this project is to understand which sites are necessary to raise the catalytic ability of an enzyme and how the stability to heat and the functional efficiency are related in an enzyme. As a model enzyme, isopropylmalate dehydrogenase, an enzyme in leucine biosynthesis, was selected and leuB gene which cods the enzyme, was coned into E.coli and expressed. Since the enzyme activity of isopropylmalate dehydrogenase from an extreme thermophile, Thermus thermophilus, is poor at 40℃, the E.coli transformants which harbor leuB gene from T.thermophilus could not grow well in the absence of leucine. Mutants which can grow faster were picked up and the enzyme produced by the isolated mutants was analyzed and characterized. The conclusions are; 1 It is not necessary to trade the stability to heat for improved activity at lower temperatures, and it is possible to create a robust enzyme with high catalytic activity at mesophilic temperatures, and 2 It is not necessary to replace amino acids residues at the active site for improvement of the catalytic properties, rather displace the position of the residues at the active center by replacing the residues located far from the center.

Report

(4 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] M.Ishida, et al.: "Overexpression in Escherichia coli of the AT-rich trpA and trpB genes from the hyperthermophilic archaeon Pyrococcus furiosus."FEMS Microbiol.Letters. 216. 179-183 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.ISHIDA, T.OSHIMA: "Effective Structure of a Leader Open Reading Frame for Enhancing the Expression of GC-Rich Genes."J.Biochem.. 132(1). 63-70 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] C.Motono, et al.: "High thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus resulting from low deltaCp of unfolding."Protein Eng.. 14(12). 961-966 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Yasugi, et al.: "Analysis of the effect of accumulation of amino acid replacements on activity of 3-isopropylmalate dehydrogenase from Thermus thermophilus."Protein Eng.. 14(8). 601-607 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Yasugi, et al.: "Cold Adaptation of the Thermophile Enzyme 3-Isopropylmalate Dehydrogenase."J.Biochem.. 129(3). 477-484 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Tamakoshi, et al.: "Selection of stabilized 3-isopropylmalate dehydrogenase of Saccharomyces cerevisiae using host-vector system of an extreme thermophile, Thermus thermophilus."Extremophiles. 5. 17-22 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Ishida, et al.: "Overexpression in Escherichia coli' of the AT-rich trpA and trpB genes from the hyperthermophilic archaeon Pyrococcus furiosus"FEMS Microbiol.Letters. 216. 179-183 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.ISHIDA, T.OSHIMA: "Effective Structure of a Leader Open Reading Frame for Enhancing the Expression of GC-Rich Genes"J.Biochem.. 132(1). 63-70 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] C.Motono, et al.: "High thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus resulting from low deltaCp of unfolding"Protein Eng.. 14(12). 961-966 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Yasugi, et al.: "Analysis of the effect of accumulation of amino acid replacements on activity of 3-isopropylmalate dehydrogenase from Therinus thermophilus"Protein Eng.. 14(8). 601-607 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Yasugi, et al.: "Cold Adaptation of the Thermophile Enzyme 3-Isopropylmalate Dehydrogenase"J.Biochem.. 129(3). 477-484 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Tamakoshi, et al.: "Selection of stabilized 3-isopropylmalate dehydrogenase of Saccharomyces cerevisiae using host-vector system of an extreme thermophile, Thermus thermophilus"Extremophiles. 5. 17-22 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Ishida, et al.: "Overexpression in Escherichia coil of the AT-rich trpA and trpB genes from the hyperthermophilic archaeon Pyrococcus furiosus"FEMS Microbiol. Letters. 216. 179-183 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.ISHIDA, T.OSHIMA: "Effective Structure of a Leader Open Reading Frame for Enhancing the Expression of GC-Rich Genes"J. Biochem.. 132(1). 63-70 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Suzuki, et al.: "Sulfolobus tokodaii sp. nov. (f. Sulfolobus sp. strain 7), a new member of the Sulfolobus isolated from Beppu Hot Springs, Japan"Extremophiles. 6(1). 39-44 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] C.Motono, et al.: "High thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus resulting from low deltaCp of unfolding"Protein Eng.. 14(12). 961-966 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Yasugi, et al.: "Analysis of the effect of accumulation of amino acid replacements on activity of 3-isopropylmalate dehydrogenase from Thermus thermophilus"Protein Eng.. 14(8). 601-607 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Yasugi, et al.: "Cold Adaptation of the Thermophile Enzyme 3-Isopropylmalate Dehydrogenase"J. Biochem.. 129(3). 477-484 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] Toshiharu Suzuki et al.: "Sulfolobus tokodaii sp. nov.(f.Sulfolobus sp. strain 7), a new member of the Sulfolobus isolated from Beppu Hot Springs, Japan"Extremophiles. 6(1). 39-44 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yutaka kawarabayasi et al.: "Complete Genome Sequence of an Aerobic Thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain 7"DNA Research. 8(4). 123-140 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Raita Hirose et al.: "Crystal structures of mutants of Thermus thermophile IPMDH adapted to low temperatures"Protein Eng.,. 14(2). 81-84 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Toshiharu Suzuki et al.: "Adaptation of a thermophilic enzyme, 3-isopropylmalate dehydrogenase, to low temperatures"Protein Eng.,. 14(2). 85-91 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Hayashi-Iwasaki et al: "Purification and characterization of Recombinant 3-Isopropylmalate Dehydrogenases from Thermus thermophilus and Other Microorganisms."In "Methods in Enzymology" (eds.By RA.Harris,JR.Sokatch). 324. 301-322 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Hori et al.,: "Identification of Thermus thermophilus HB8 tRNA(Gm18)methyltransferase gene."Nucleic Acid Symp.. Ser44. 167-168 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] N.Tanaka and T.Oshima: "Structure and Thermostability of 3-Isopropylmalate Dehydrogenase."Protein Peptide Letters,. 7[5]. 333-340 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Hori et al.,: "The initial step of the therma1 unfolding of 3-isopropylmalate dehydrogenase detected by the temperature-jump Laue method."Protein Engng.. 13[8]. 527-533 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Z.NURACHMAN et al.,: "Crystal structures of 3-isopropylmalate dehydrogenases with mutations at the C-terminus : Crystallographic analyses of structure-stability relationships"Protein Engng.. 13[4]. 253-258 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 大島泰郎: "高度好熱菌から学ぶ"第14回大学と科学シンポジウム「生物の働きを生み出すタンパク質のかたち」. 172-182 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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