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Polycationic copolymers having stabilizing activity toward triplex DNA

Research Project

Project/Area Number 12480260
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biomedical engineering/Biological material science
Research InstitutionTokyo Institute of Technology

Principal Investigator

MARUYAMA Atsushi  Graduate School of Bioscience and biotechnology, Associate Professor, 大学院・生命理工学研究科, 助教授 (40190566)

Co-Investigator(Kenkyū-buntansha) TAKEI Yoshiyukii  Juntendo University, School of Medicine, Lecturer, 医学部, 講師 (10306954)
Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥6,700,000 (Direct Cost: ¥6,700,000)
Fiscal Year 2002: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 2001: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 2000: ¥2,300,000 (Direct Cost: ¥2,300,000)
KeywordsGraft copolymers / Polycation / Oligonucleotides / DNA triplex / Gene expression / Polyion complex / Transcription factor / Collagen / 転与因子 / アンチジーン法 / ポリカチオングラフト共重合体 / バイオコンジュゲート / 遺伝子治療
Research Abstract

Stabilization of nucleotide hybridization is considered important for improving gene therapy using oligonucleotides. We have designed comb-type copolymer consisting of polycation backbone (polylysine) and hydrophilic side chains as a stabilizer for double and triple helical DNAs. The copolymer considerably increased the thermal stability of triple helical structure but did not affect the reversible transition between triple helical and single-stranded DNA. An in vitro electrophoretic mobility shift assay revealed that the copolymer remarkably increased association constants of both Hoogsteen and reverse Hoogsteen-type triple helix formation. Moreover the triple helix-stabilizing efficiency of the copolymer was significantly higher than that of other oligocations like spermine and spermidine. Not only being good DNA triple helix stabilizer, it has also been shown to accelerate DNA strand exchange reactions between double helical DNA and its complementary oligonucleotides. From these, we conclude that this copolymer is capable of either stabilizing or activating DNA hybrids, and may useful for gene targeting employing oligonucleotides.

Report

(4 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (29 results)

All Other

All Publications (29 results)

  • [Publications] H.Akashi, H.Kawasaki, W.J.Kim, T.Akaike, K.Taira, A.Maruyama: "Enhancement in the cleavage activity of a hammerhead ribozyme by cationic comb-type polymers and an RNA helicase in vitro"J.Biochem.. 131. 687-692 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Sato, W.J.Kim, S.W.Choi, M.Saito, A.Kano, T.Akaike, A.Maruyama: "Investigation of DNA strand exchange mechanisms mediated by cationic polymers"Nucleic Acids Res., Suppl.. NO2. 59-60 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 丸山厚: "核酸認識を制御する新しい高分子材料、先端科学シリーズIII"バイオマテリアル. (印刷中). (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 丸山厚: "DNA二重鎖の鎖交換を加速する人工核酸シャペロン"化学と教育. (印刷中). (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 丸山厚: "核酸を機能制御するバイオマテリアルデザイン"物性研究. 79. 400-409 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 丸山厚: "核酸シャペロン機能を持つ高分子設計とSNPs解析への応用"Bio Industry. 19. 38-46 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Akashi, H. Kawasaki, W. J. Kim, T. Akaike, K. Taira, A.Maruyama: "Enhancement in the cleavage activity of a hammerhead ribozyme by cationic comb-type polymers and RNA helices in vitro"J. Biochem.. 131. 687-682 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y. Sato, W. J. Kim, S. W. Choi, M. Saito, A. Kano, T. Akaike, A. Maruyama: "Investigation of DNA strand exchange mechanisms mediated by cationic polymers"Nucleic Acids Res.. Suppl No2. 59-60 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A.Maruyama: "Nobel polymeric materials regulating nucleic acid recognition"Biomaterials. 192-197 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A.Maruyama: "Manipulating nucleic acid hybridization with artificial Polymers"Chemistry and Education. (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A.Maruyama: "Design of biomaterials that are capable of controlling nucleic acid functions"Bussei Kenkyu. 79 No3. 400-409 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A.Maruyama: "Design of Polymer Material having Nucleotide Chaperone Function and its Use in SNPs Detection"Bio Industry. 19. 38-46 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Akashi, H.Kawasaki, W.J.Kim, T.Akaike, K.Taira, A.Maruyama: "Enhancement in the cleavage activity of a hammerhead ribozyme by cationic comb-type polymers and an RNA helicase in vitro"J. Biochem.. 131. 687-692 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Sato, W.J.Kim, S.W.Choi, M.Saito, A.Kano, T.Akaike, A.Maruyama: "Investigation of DNA strand exchange mechanisms mediated by cationic polymers"Nucleic Acids Res., Suppl.. NO2. 59-60 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 丸山厚: "核酸認識を制御する新しい高分子材料、先端科学シリーズIII"バイオマテリアル. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 丸山厚: "DNA二重鎖の鎖交換を加速する人工核酸シャペロン"化学と教育. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 丸山厚: "核酸を機能制御するバイオマテリアルデザイン"物性研究. 79. 400-409 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 丸山厚: "核酸シャペロン機能を持つ高分子設計とSNPs解析への応用"Bio Industry. 19. 38-46 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Akashi, H.Kawasaki, W.J.Kim, T.Akaike, K.Taira, A.Maruyama: "Enhancement in the cleavage activity of a hammerhead ribozyme by cationic comb-type polymers and an RNA helicase in vitro"J. Biochem.. (accepted). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] W.J.Kim, T.Ishihara, T.Akaike, A.Maruyama: "Comb-type cationic copolymer expediates DNA strand exchange while stabilizing DNA duplex"Chem. Eur. J.. 7. 176-180 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] W.J.Kim, T.Akaike, A.Maruyama: "Polycation graft copolymers accelerating DNA strand exchange : involvement of ionic interaction"Nucleic Acids Res. Suppl.. No.1. 151-152 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Torigoe, T.Akaike, A.Maruyama: "Synergistic stabilization of triplex by combination of comb-type cationic copolymer and oligo-N3 ->P5 phospharamidates"Nucleic Acids Res. Suppl.. No.1. 195-196 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 丸山厚: "遺伝子発現を制御する高分子キャリアシステム"医学のあゆみ. 199. 777-778 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Atsushi Maruyama, Manami Ueda, Won Jong Kim, Toshihiro Akaike: "Design of Polymer Materials Enhancing Nucleotide Hybridization for Anti-gene Technology"Advance in Drug Delivery Systems. 52. 227-233 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 丸山厚: "核酸ハイブリッドの機能制御、高分子科学最近の進歩"高分子. 50. 669-674 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] A.Ferdous et al.: "Mechanism of intermolecular purine-purine-pyrimidine triple helix stabilization by comb-type polylysine graft copolymer at physiologic potassium concentration"Bioconjugate Chem.. 11 . 520-526 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] A.Ferdous et al.: "Inhibition of sequence-specific protein-DNA interaction and restriction endonuclease cleavage via triplex stabitization by poly(L-lysine)-graft-dextran copolymer"Biomacromolecules. 1. 186-193 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] M.Ueda et al.: "Triplex formation using ODN conjugates with polycation combtype copolymer"Nucleic Acids Sym.Ser.. 44. 209-210 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 丸山厚 他: "ポリカチオングラフト共重合体による3重鎖DNAの安定化"生物物理. 40. 244-248

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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