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High-throughput Screening of Proteins by Electrochemical Protein Chip

Research Project

Project/Area Number 12555236
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field 工業分析化学
Research InstitutionKYUSHU UNIVERSITY

Principal Investigator

TAKAGI Makoto  Faculty of Engineering, Kyushu University, Prof., 大学院・工学研究院, 教授 (90037739)

Co-Investigator(Kenkyū-buntansha) NAKAMURA Shigeo  Faculty of Engineering, Kyushu University, Res. Assoc., 大学院・工学研究院, 助手 (00264078)
WAKI Michinori  Faculty of Engineering, Kyushu University, Assoc. Prof., 大学院・工学研究院, 助教授 (30037212)
TAKENAKA Shigeori  Faculty of Engineering, Kyushu University, Assoc. Prof., 大学院・工学研究院, 助教授 (60188208)
OGAWA Masashi  FUJI PHOTO FILM CO., LTD., Eauipment Products Div., Researcher, 機器事業部・サイエンスシステム, 研究員
KONDO Hiroki  Kyushu Institute of Technology, Faculty of Computer Science and Systems Engineering, Prof., 情報工学部, 教授 (60038057)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥13,700,000 (Direct Cost: ¥13,700,000)
Fiscal Year 2001: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2000: ¥10,400,000 (Direct Cost: ¥10,400,000)
Keywordsprotein chip / electrochemistry / gold electrode / electrochemical chip / ferrocene / L2-G peptide / L2 peptide / Helix G peptide / 静電的相互作用
Research Abstract

By the near completion of the human genome sequencing project, attention is now shifting toward the analysis of proteins or proteoms. In this respect, protein chips are regarded as a high-throughput means of studying protein expression. Protein chips are made of various proteins immobilized on the surface of a substrate. The aim of this project is to develop a protein chip based on the knowledge obtained from our study of electrochemical DNA chips. To realize this purpose, we constructed a protein chip by immobilizing a protein carrying a cysteine residue on the gold electrode through the gold-sulfur linkage and tried to establish an electrochemical analysis system with it.
First of all, we verified in a preliminary experiment with peptides that this system works as designed. Peptides carrying different charges immobilized on a gold electrode and their interaction with ferrocenecarboxylic acid was studied electrochemically. Ferrocenecarboxylic acid bound strongly to cationic peptides im … More mobilized on the electrode as proven by an increase in the redox current due to the ferrocene, whereas it failed to bind to anionic peptides because of electrostatic repulsion.
In the next experiment, Rec A protein, known to discriminate single and double stranded DNA, and its functional domains, L2 and Helix G peptides, were synthesized by the peptide synthesizer with Fmoc chemistry and tested whether their interaction with single stranded DNA can be monitored electrochemically. These peptides were immobilized on the individual electrodes and were allowed to interact with single or double stranded DNA carrying an electrochemically active ferroncene moiety. This system, once established, should be useful for the screening of DNA binding peptides or proteins. Electrochemical as well as Quartz Crystal Microbalance experiments suggested that the L2 part of the protein is important for the interaction with nucleic bases of DNA and the Helix G part contributes to the discrimination between single and double stranded DNAs. These results opened up a new vista for the development of an electrochemical protein chip. Furthermore, high-throughput screening of various other proteins should be possible by using the scanning electrochemical microscope. Less

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] H.Ueyama et al.: "Novel synthesis of a tetra-acridinyl peptide as a new DNA polyintercalator"Nucleic Acid Symposium Series. 44. 133-134 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H.Ueyama et al.: "DNA binding behavior of peptides carrying acridinyl units : First example of effective poly-intercalataion"Nucleic Acid Research Supplement. 1. 163-164 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K.Yamashita et al.: "Visualization of DNA microarrays by scanning electrochemical microscopy (SECM)"Analyst. 126. 1210-1211 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Takagi et al.: "High-throughput, high-sensitivity detection of targeted genes by ECA (Electro-Chemical Array)"Technical Digest of the 18^<th> Sensor Symposium. 387-393 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S.Takenaka et al.: "Base mutation analysis by a ferrocenyl naphthalene diimide drivative"Nucleosides, Nucleotides & Nucleic Acids. 20・4-7. 1429-1432 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K.Yamashita et al.: "Analysis of the complex of oligonucleotide duplexes with ligands by MALDI-TOF Mass Spectroscopy"Chem. Lett.. 680-681 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Takagi: "Threading intercalation to double-stranded DNA and the application to DNA sensing. Electrochemical array technique"Pure Appl. Chem.. 73・10. 1573-1577 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 竹中繁織: "h. DNAおよびRNA 分析化学便覧"丸善. 7 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Ueyama et al.: "Novel synthesis of a tetra-acridinyl peptide as a new DNA polyintercalator"Nucleic Acid Symposium Series. 44. 133-134 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Ueyama et al.: "DNA binding behavior of peptides carrying acridinyl units : First example of effective poly-intercalation"Nucleic Acid Research Supplements. 1. 163-164 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K. Yamashita et al.: "Visualization of DNA microarrays by scanning electrochemical microscopy (SECM)"Analyst. 126. 1210-1211 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Takagi et al.: "High-throughput, high-sensitivity detection of targeted genes by ECA (Electro-Chemical Array)"Technical Digest of the 18^<th> Sensor Symposium. 387-393 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Takenaka et al.: "Base mutation analysis by a ferrocenyl naphthalene diimide drivative"Nucleosides, Nucleotides & Nucleic Acids. 20 (4-7). 1429-1432 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K. Yamashita et al.: "Analysis of the complex of oligonucleotide duplexes with ligands by MALDI-TOF Mass Spectroscopy"Chem. Lett.. 680-681 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Takagi: "Threading intercalation to double-stranded DNA and the application to DNA sensing. Electrochemical array technique"Pure Appl. Chem.. 73 (10). 1573-1577 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Takenaka: "DNA and RNA"Bunseki Kagaku Binran, Maruzen. 7 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H.Ueyama et al.: "DNA binding behavior of peptides carrying acridinyl units : First example of effective poly-intercalataion"Nucleic Acid Research Supplement. 1. 163-164 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Yamashita et al.: "Visualization of DNA microarrays by scanning electrochemical microscopy (SECM)"Analyst. 126. 1210-1201 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Takagi et al.: "High-throughput, High-sensitivity detection of targeted genes by ECA (Electro-Chemical Array)"Technical Digest of the 18^<th> Sensor Symposium. 387-393 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Takenaka et al.: "Base mutation analysis by a ferrocenyl naphthalene diimide drivative"Nucleosides, Nucleotides & Nucleic Acids. 20・4-7. 1429-1432 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Yamashita et al.: "Analysis of the complex of oligonucleotide duplexes with ligands by MALDI-TOF Mass Spectroscopy"Chem. Lett. 680-681 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] M, Takagi: "Threading intercalation to double-stranded DNA and the application to DNA sensing. Electrochemical array technique"Pure Appl. Chem.. 73・10. 1573-1577 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 竹中繁織: "h. DNAおよびRNA 分析化学便覧"丸善. 7 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Ueyama et al.: "Novel synthesis of a tetra-acridinyl peptide as a new DNA polyintercalator"Nucleic Acids Symposium Series. 44. 133-134 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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