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Development of high sensitive electrochemical DNA microarray

Research Project

Project/Area Number 12557012
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field General medical chemistry
Research InstitutionUniversity of Tsukuba

Principal Investigator

UCHIDA Kazuhiro  University of Tsukuba, Inst. Basic Med. Sci., Associate Prof., 基礎医学系, 助教授 (90211078)

Co-Investigator(Kenkyū-buntansha) TAKENAKA Shigeori  University of Tsukuba, Inst. Technology, Associate Prof., 大学院・工学研究院, 助教授 (60188208)
ICHIKAWA Yoshihito  University of Tsukuba, Inst. Clinical Medicine, Assistanr Prof., 臨床医学系, 講師 (30302425)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥10,300,000 (Direct Cost: ¥10,300,000)
Fiscal Year 2001: ¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2000: ¥6,500,000 (Direct Cost: ¥6,500,000)
Keywordshuman genome / cDNA library / DNA chin / Micriarray / マウス / 電気化学
Research Abstract

It is very important to develop a new DNA chip, which overcomes the problem in the present DNA microarray. In this project, we aim at developing a microelectrode, which immobilizes a synthetic oligonucleotide concerned with vanous genetic diseases and establishing a simple and quick electrochemical detection system for the hybrid with genomic DNA taken from patients. Once realized, this system will allow us to diagnose cancers and infectious diseases efficiently. We have investigated the followings: 1) Study of the preparation technology of microelectrode arrays, 2) Study of the probes of oligonucleotide on the electrode, 3) Study of a technology to analyze electrocheinical data, 4) Establishment of cDNA database for electrochemical array, 5) Study of preparation method of blood samples. We also analyzed genomic alterations in the bile duct cancers and thyroid cancers to identify the valuable genes for genomic diagnosis using electrochernical array. The knowledge thus obtained is useful to develop a potable gene diagnosis instrument to analyze genetic information.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (31 results)

All Other

All Publications (31 results)

  • [Publications] 内田 和彦: "ゲノム科学が創薬にもたらすもの"創薬サイエンス入門 ゲノム正規へのパラダイムシフト. 34-46 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 越川 知行, 内田 和彦: "遺伝子診断技術の進歩"小児科診療. 64 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 内田 和彦: "SNPと疾患ゲノミクス"Clinical Neuroscience. 19. 104-105 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 金居 正幸, 内田 和彦: "ラジオルミノグラフィによるマイクロアレイ解析"Radioisotopes. 50. 27-32 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 内田和彦, 柏木浩暢, 三輪正直: "DNAマイクロアレイを用いたゲノムワイドの遺伝子増幅、欠失解析"遺伝子医学. 4. 113-117 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 柏木 浩暢, 内田 和彦: "DNA chip"Surgery Frontier. 7. 75-79 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 内田 和彦, 竹中 繁織: "DNAマイクロアレイと電気学的検出方を用いた超高感度遺伝子解析システム"細胞工学別冊. 76-83 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 内田 和彦: "DNAマイクロアレイと遺伝子発現情報データベース"化学と生物. 38. 676-683 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uchida, M., Hanai, S., Uematsu, N., Sawamoto, K., Okano, H., Miwa, M., Uchida, K.: "Genetic and functional analysis of PARP, a DNA strand break-binding enzyme."Mutat.Res.. 447. 89-96 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uchida, M., Hanai, S., Uematsu, N., Sawamoto, K., Okano, H., Miwa, M., Uchida, K.: "Genetic and functional analysis of PARP, a DNA strand break-binding enzyme."Mutat.Res.. (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Feng, R., Kabayama, A., Uchida, K, Hoshino, H., Miwa, M.: "Cell-free entry of human T-cell leukemia virus type 1 to mouse cells."Jpn.J.Cancer Res.. 92. 410-416 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tanaka, M., Sun, S., Fang, J., Nitta, T., Yoshida, T., Kohtoh, S., Kikukawa, H., Hanai, S., K, Miwa, M.: "HTLV-1 infection to mice: proliferation of cell clones with integrated HTLV-1 provirus in lymphoid organs."J.Virol.. 75(9). 4420-4423 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kashiwagi H., Uchida K.: "Genome-wide profiling of gene amplification and deletion in cancer."Human Cell. 13. 135-141 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kudoh, K., Takano, M., Koshikawa, T., Yoshida, S., Hirai, M., Kikuchi, Y., Nagata, I., Miwa, M., Uchida, K.: "Comparative genomic hybridization for analysis of chromosomal changes in cisplatin-resistant ovarian cancer."Human Cell. 13. 109-116 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ghosh, M., Kawamoto, T., Koike, N., Fukao, K., Yoshida, S., Kashiwagi, H., Kapoor, V.K., Agarwal, S., Krishnani, N., K, Miwa, M., Todoroki, T.: "Cyclooxygenase expression in the gallbladder."Int.J.Mol.Med.. 6. 527-532 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kanai M., Uchida M., Hanai S., Uematsu N., Uchida K., Miwa M.: "Poly(ADP-ribose) polymerase localizes to the centrosomes and chromosomes."Biochem.Biophys.Res.Commun.. 278. 385-389 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Miwa, M., Kanai, M., Sun, B., Hirai, M., Xm, X., Sitoh, S., Hanai, S., Kaneko, M., Nakagawara, A., Uchida, K.: "DNA methylation in neuroblastoma, DNA Methylation and Cancer, (S.Hirohashi, et al., ed.)"Princess Takamatsu Cancer Research Fund, Tokyo. (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uchida, M., et al.: "Overexpression of poly(ADP-ribose) polymerase disrupts organization of cytoskeletal F-actin and tissue polarity in Drosophila"J. Biol. Chem.. 277. 6696-6702 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Uchida, M., et al.: "Genetic and functional analysis of PARP, a DNA strand break-binding enzyme"Mutation Res. 447. 89-96 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Feng, R., et al.: "Cell-free entry of human T-cell leukemia virus type 1 to mouse cells"Jpn. J. Cancer Res.. 92. 410-416 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 内田和彦: "新医療"ゲノム医療に要望される情報システム. 323. 60-63 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 内田和彦: "創薬サイエンス入門 ゲノム世紀へのパラダイムシフト"共立出版. 250 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Miwa, M., et al.: "DNA methylation in neuroblastoma"DNA Methylation and Cancer (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Tanaka, M., et al.: "HTLV-1 infection to mice : proliferation of cell clones with integrated HTLV-1 provirus in lymphoid organs"J. Virol.. (In press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Uchida, M., et al.: "Genetic and functional analysis of PARP, a DNA strand break-binding enzyme"Mut. Res.. (In press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Feng, R., et al.: "Cell-free entry of human T-cell leukemia virus type 1 to mouse cells"Jpn. J. Cancer Res.. (In press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ghosh, M., et al.: "Cyclooxygenase expression in the gallbladder"Int. J. Mol. Med.. 6. 527-532 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kanai.M., et al.: "Poly(ADP-ribose) polymerase localizes to the centrosomes and chromosomes"Biochem. Biophys. Res. Commun.. 278. 385-389 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kashiwagi H., Uchida K.: "Genome-wide profiling of gene amplification and deletion in cancer"Human Cell. 13. 135-141 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 内田 和彦: "ゲノム創薬の新潮流"シーエムシー. 181 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 内田 和彦: "創薬サイエンス入門 ゲノム世紀へのパラダイムシフト"共立出版. 250 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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