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Diagnostic System for Biological Characteristics of Cancer by Genome Microarray

Research Project

Project/Area Number 12557019
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Human pathology
Research InstitutionYAMAGUCHI UNIVERSITY

Principal Investigator

SASAKI Kohsuke  YAMAGUCHI UNIV., SCH. OF MED., DEPARTMENT OF PATHOLOGY, PROFESSOR, 医学部, 教授 (80116722)

Co-Investigator(Kenkyū-buntansha) OGA Atunori  YAMAGUCHI UNIV., SCH. OF MED., DEPARTMENT OF PATHOLOGY, ASSISTANT, 医学部, 助手 (90243633)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥10,800,000 (Direct Cost: ¥10,800,000)
Fiscal Year 2001: ¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2000: ¥7,100,000 (Direct Cost: ¥7,100,000)
Keywordsgenome / DNA / genes / microarray / CGH / BAC / cancer / carcinogenesis / 染色体 / がん遺伝子
Research Abstract

It is widely accepted that the development of cancer results from the accumulation of gene aberrations in cellular nucleus. In order to understand the biological characteristics of tumors and to perform the effective treatment for tumors, it is necessary to make a comprehensive analysis of genomic changes in tumor cells. Cancer shows great variation in biological behavior (the degree of malignancy) as known as tumor heterogeneity. At present, however, there are no reliable methods to estimate biological characteristics of tumor. In this project, we made basic study for developing a genome microarray system to detect aberrations in genome of tumor cells.
1. The increase in DNA copy number was examined by DNA genome microarray spotted with 57 oncogenes in hepatocellular carcinoma and esophageal squamous cell carcinoma. These data have been publised in scientific journal or a paper was prepared for publication.
2. We are trying to develop software for analysis of data obtained from genome microarray.
3. The identification of genes involved in carcinogenesis is being tried by data extraction from comparative genomic hybridization analysis for developing genome microarray. Indeed, BAC contig have set for the interested chromosomal loci and genome array is being prepared.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] Takeo S: "Examination of oncogene amplification by genomic DNA microarray in hepato Cellular carcinomas"Cancer Genetics and Cytogenetics. 130(2). 127-132 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hashimoto Y: "Amplification of 3q26 approximately qter correlates with tumor progression in head and neck squamous cell carcinoma"Cancer Generics and Cytogenetics. 129. 52-56 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kubota H: "Identification of recurrent chromosomal re arrangement and the unique relationship between low-level amplification and translocation in glioblastoma"Genes Chromosomes and Cancer. 26. 34-38 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Umayahara K: "Comparative genomic hybridization detects genetic alterations during early stages of cervical cancer progression"Genes Chromosomes and Cancer. 33(1). 98-102 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Harada T: "Inrerglandular cyrogenetic heterogeneity detected by comparative genomic hybridization in pancreatic cancer"Cancer Research. 62(3). 835-839 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ueno T: "Gain of 5P^15 detected by cmparative genomic hybridization as an independent marker of poor prognosis in patients with esophageal squamous cell carcinoma"Clinical Cancer Research. 8(2). 526-533 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ueno T: "Gain of 5p15 detected by comparative genomic hybridization as an independent marker of poor prognosis in patients with esophageal squamous cell carcinoma"Clinical Cancer Research. 8. 526-533 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Harada T: "Interglandular cytogenetic heterogeneity detected by comparative genomic hybridization in pancreatic cancer"Cancer Research. 62. 835-839 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Umayahara K: "Comparative genomic hybridization detects genetic alterations during early stages of cervical cancer progression"Genes Chromosomes and Cancer. 33. 98-102 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kubota H: "Identification of recurrent chromosomal re arrangement and the unique relationship between low-level amplification and translocation in glioblastoma"Genes Chromosomes and Cancer. 26. 34-38 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takeo S: "Examination of oncogene amplification by genomic DNA microarray in hepatocellular carcinomas"Cancer Genet Cytogenet. 130 (2). 127-132 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hashimoto Y: "Amplification of 3q26 approximately qter correlates with tumor progression in head and neck squamous cell carcinomas"Cancer Genet Cytogenet. 129. 52-6 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takeo S: "Examination of oncogene amplification by genomic DNA microarray in hepato-Cellular carcinomas"Cancer Genetics and Cytogenetics. 130(2). 127-132 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hashimoto Y: "Amplification of 3q26 approximately qter correlates with tumor progression in head and neck squamous cell carcinoma"Cancer Genetics and Cytogenetics. 129. 52-56 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kubota H: "Identification of recurrent chromosomal re arrangement and the unique relationship between low-level amplification and translocation in glioblastoma"Genes Chromosomes and Cancer. 26. 34-38 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Umayahara K: "Comparative genomic hybridization detects genetic alterations during early stages of cervical cancer progression"Genes Chromosomes and Cancer. 33(1). 98-102 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Harada T: "Interglandular cytogenetic heterogeneity detected by comparative genomic hybridization in pancreatic cancer"Cancer Research. 62(3). 835-839 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ueno T: "Gain of 5p15 detected by cmparative genomic hybridization as an independent marker of poor prognosis in patients with esophageal squamous cell carcinoma"Clinical Cancer Research. 8(2). 526-533 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Tada K.: "Gains of 8q23-qter and 20q and loss of 11q22-qter in esophageal squamous cell carcinoma associated with lymph node metastasis."Cancer. 88. 268-273 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Tada K.: "Cytogenetic analysis of esophageal squamous cell carcinoma cell lines by comparative genomic hybridization : Relationship of cytogenetic aberrationsto in vitro cell growth."Cancer Genetic & Cytogenetics. 117. 108-112 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Okafuji M.: "The relationship of genetic aberrations detected by comparative genomic hybridization to DNA ploidy and tumor size in human oral squamous cell carcinomas."J Oral Pathol Med. 29. 226-231 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hashimoto Y.: "Relationship between cytogenetic aberrations by CGH coupled with tissue microdissection and DNA ploidy by laser scanning cytometry in head and neck squamous cell carcinoma."Cytometry. 40. 161-166 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 佐々木功典: "応用サイトメトリー"医学書院. 369 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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