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Designing of inhibitors for prostaglandin D synthases based on crystallographic analyses

Research Project

Project/Area Number 12558078
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Structural biochemistry
Research InstitutionOSAKA BIOSCIENCE INSTITUTE

Principal Investigator

URADE Yoshihiro  Osaka Bioscience Inst.2ND dep., HEAD, 第2研究部, 研究部長 (10201360)

Co-Investigator(Kenkyū-buntansha) INOUE Thutoshi  Osaka University. dept. of Appl. Chem., Instructor, 大学院・工学研究科, 講師 (20263204)
EGUCHI Naomi  Osaka Biosci. Inst., 2nd. dept., vice Head, 第2研究部, 副部長 (10250086)
HAYAISHI Osamu  Osaka Biosci. Inst., 2nd. dept., Research Associate, 第2研究部, 研究員 (40025507)
KAI Yasushi  Osaka University. dept. of Appl. Chem., Instructor, Professor, 大学院・工学研究科, 教授 (40029236)
望月 貴年  (財)大阪バイオサイエンス研究所, 第2研究部, 研究員 (40263933)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥13,700,000 (Direct Cost: ¥13,700,000)
Fiscal Year 2001: ¥4,800,000 (Direct Cost: ¥4,800,000)
Fiscal Year 2000: ¥8,900,000 (Direct Cost: ¥8,900,000)
Keywordsprostaglandin D2 / transgenic mouse / eosinophil / Th2 cytokine / X-ray'crystallography / enzyme inhibitor / allergy / sleep / 肥満細胞
Research Abstract

Prostaglandin (PG) D_2 is actively produced in the central nervous system and exhibits a variety of central actions such as sleep induction and pain modulation. POD2 is also produced by mast cells and Th2 cells and is released as an inflammatory and allergic mediator. There are two distinct types of POD synthase (PGDS) : one is lipocalin-type PODS (L-PGDS) localized in the central nervous system and the other is hematopoietic POD synthase (H-PODS) expressed in those allergy-related cells. These two enzymes catalyze the same reaction from POH_2 to POD2 but possess no homology at all in their amno acid sequences. Recombinant mouse L-PGDS and human H-PGDS were cocrystallized with several inhibitors selective to each PODS. We obtained the X-ray diffraction data of these crystals at KEK and Spring-8 synchrotron facilities. The 3-D coordinates of L-PODS complexed with its inhibitor AT-056 were determined at a resolution of 2.5 Å. We also determined the 3-D coordinates of H-PODS complexed wit … More h Mg^<2+> or Ca^<2+> and 4 different inhibitors, including an orally effective inhibitor HQL-79, at 1.2 to 1.8 Å resolution. As predicted, the tertiary structures of two enzymes are quite different from each other L-PGDS possesses β-barrell structure with hydrophobic pocket and H-PGDS, α+β structure with a catalytic creft containing the glutathione-binding site within 2 subdomains. Based on the crystallographic structures, we introduced the site-directed mutagenesis to identify the amino acid residues involved in the catalytic reactions by L-PODS and H-PODS. We then surveyed the functional abnormality of trarisgenic (TG) mice that over-expressed human L-PODS or H-PODS under the control of the β-actin promoter. We found that L-PGDS-TG mice showed a striking time-dependent increase in non-rapid eye movement sleep afler stimulation by tail clipping. The sleep induction in TO mice was positively correlated with the POD2 production in the brain. In an ovalbumin-induced asthma model, L-PODS- or H-PGDS-TG mice showed a pronounced infiltration of eosinophils and lymphocytes into the lung and upregulation of Th2 cytokines in the bronchoalveolar lavage fluid. These TO mice are useful to monitor the in vivo efficacy of the lead compounds to develop the PGDS inhibitors act as anti-doze drugs or anti-allergy drugs. Less

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (46 results)

All Other

All Publications (46 results)

  • [Publications] Kanaoka, Y., et al.: "Structure and chromosomal localization of human and mouse genes for hematopoietic prostaglandin D synthase"Eur.J.Biochem.. 267. 3315-3322 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Pinzar, E.I., et al.: "Structural basis of hematopoletic prostaglandin D synthase activity elucidated by site-directed mutagenesis"J.Biol.Chem.. 27. 31239-31244 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujimori, K., et al.: "Transcriptinal activation of the human hematopoletic prostagaindin D synthase gene in megakaryoblastic cells"J.Biol.Chem.. 275・51. 40511-40516 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Urade, Y., et al.: "Biochemical, structural, genetic, physiological, and pathophysiological features of lipocalin-type prostaglandin D synthase"Biochim.Biophys.Acta. 1482. 259-271 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Urade, Y., et al.: "Prostaglandin D synthase : structure and function"Vitamins and Hormones. 58. 89-120 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Pinzar, E.I., et al.: "Prostaglandin D synthase gene is involved in the regulation of non-rapid eye movement sleep"Proc.Natl.Acad.Sci.USA. 97. 4903-4907 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hirawa, N., et al.: "Urinary prostaglandin D synthase (β-trace) excretion increase in the early-stage of diabetes mellitus"Nephron. 87. 321-327 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Inoue, T., et al.: "Serum prostaglandin D synthase level after coronary angioplasty may predict occurrence of restenosis"Thromb Haemost. 85(1). 165-170 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ueno, N., et al.: "Coupling between cyclooxygenase, terminal prostanoid synthase, and phospholipase A2"J.Biol.Chem.. 276. 34918-34927 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Diaz, B., et al.: "Regulation of prostaglandin endoperoxide synthase-2 and IL-6 expression in mouse bone marrow-derived mast cells by exogenous but not endogenous prostanoids"J Immunol.. 168,3. 1397-1404 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujitani, Y., et al.: "Pronounced eosinophilic lung inflammation and Th2 cytokine release in human liocalin-type prostaglandin D synthase transgenic mice"J Immunol.. 0022-1767 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hayaishi, O., et al.: "Prostaglandin D2 in Sleep-wake regulation : recent progress and perspectives"The Neurosci.. 1073-8584 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okinaga, T., et al.: "Induction of hematopoletic prostaglandin D synthase in hyalinated necrotic muscle fibers : its implication in grouped necrosis"Acta Neuropathol.. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Taniike, M., et al.: "Perineuronal oligodendrocytes protect against neuronal apoptosis through production of lipocalin-type prostaglandin D synthase in a genetic demyelinating model"The Neurosci.. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kanaoka, Y., et. al.: "Structure and chromosomal localization of human and mouse genes for hematopoietic prostaglandin D synthase."Eur. J. Biochem.. 267. 3315-3322 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Pinzar, E. I., et. al.: "Structural basis of hemaotpoietic prostaglandin D synthase activity elucidated by site-directed mutagenesis."J. Biol. Chem.. 27. 31239-31244 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujimori, K., et. al.: "Transcriptional activation of the human hematopoietic prostaglandin D synthase gene in megakaryoblastic cells."J. Biol. Chem.. 275・51. 40511-40516 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Urade, Y. and Hayaishi, O.: "Biochemical, structural, genetic, physiological, and pathophysiological features of lipocalin-type prostaglandin D synthase."Biochim. Biophys. Acta. 1482. 259-271 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Urade, Y. and Hayaishi, O.: "Prostaglandin D synthase : structure and function."Vitamins and Hormones. 58. 89-120 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Pinzar, E. I., et. al.: "Prostaglandin D synthase gene is involved in the regulation of non-rapid eye movement sleep."Proc. Natl. Acad. Sci. USA. 97. 4903-4907 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hiraw, N., et. al.: "Urinary prostaglandin D synthase (β-trace) excretion increase in the early-stage of diabetes mellitus."Nephron. 87. 321-327 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Inoue, T., et. al.: "Serum prostaglandin D synthase level after cornary angioplasty may predict occurrence of restenosis."Thromb Haemost. 85(1). 165-170 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ueno, N., et. al.: "Coupling between cyclooxygenase, termianl prostanoid synthase, and phospholipase A2."J. Biol. Chem.. 276. 34918-34927 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Diaz, B. et. al.: "regulation of prostaglandin endoperoxide synthase-2 and IL-6 expression in mouse bone marrow-derived mast cells by exogenous but not endogenous prostanoids."J. Immunol.. 168, 3. 1397-1404 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujitani, Y., et. al.: "Pronounced eosinophilic lung inflammation and Th2 cytokine release in huma liocalin-type prostaglandin D synthase transgenic mice."J. Immunol.. 443-449 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hayashi, O.: "Prostaglandin D2 in Sleep-wake regulation : recent progress and perspectives"The Neuroscientist. 1073-854 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okinaga, T. et. al.: "Induciton of hematopoietic prostaglandin D synthase in hyalinated necrotic muscle fibers : its implication in grouped necrosis."Acta Neuropathol.. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Taniike, M. et. al.: "Perineuronal oligodendrocytes protect against neuronal apoptosis through production of lipocalin-type prostaglandin D synthase in a genetic demyelinating model."J. Neurosci.. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kanaoka, Y.: "Structure and chromosomal localization of human and mouse genes for hematopoietic prostaglandin D synthase"Eur.J.Biochem.. 267. 3315-3322 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Pinzar, E.I.: "Structural basis of hematopoietic prostaglandin D synthase activity elucidated by site-directed mutagenesis"J.Biol.Chem.. 27. 31239-31244 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Fujimori, K.: "Transcriptinal activation of the human hematopoietic prostagalndin D synthase gene in megakaryoblastic cells"J.Biol.Chem.. 275・51. 40511-40516 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Urade, Y.: "Biochemical, structural, genetic, physiological, and pathophysiological features of lipocalin-type prostaglandin D synthase"Biochim.Biophys.Acta. 1482. 259-271 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Urade, Y.: "Prostaglandin D synthase : structure and function"Vitamins and Hormones. 58. 89-120 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Pinzar, E.I.: "Prostaglandin D synthase gene is involved in the regulation of non-rapid eye movement sleep"Proc.Natl.Acad.Sci.USA. 97. 4903-4907 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hirawa, N.: "Urinary prostaglandin D synthase (β-trace) excretion increase in the early-stage of diabetes mellitus"Nephron. 87. 321-327 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Inoue, T.: "Serum prostaglandin D synthase level after coronary angioplasty may predict occurrence of restenosis"Thromb Haemost. 85(1). 165-170 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ueno, N.: "Coupling between cyclooxygenase, terminal prostanoid synthase, and phospholipase A2"J.Biol.Chem.. 276. 34918-34927 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Diaz, B.: "Regulation of prostaglandin endoperoxide synthase-2 and IL-6 expression in mouse bone marrow-derived mast cells by exogenous but not endogenous prostanoids"J Immunol. 168,3. 1397-1404 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Fujitani, Y.: "Pronounced eosinophilic lung inflammation and Th2 cytokine release in human liocalin-type prostaglandin D synthase transgenic mice"J Immunol. 0022-1767 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hayaishi, O.: "Prostaglandin D2 in Sleep-wake regulation : recent progress and perspectives"The Neuroscientist. 1073-8584 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kanaoka,Y., et.al.: "Structure and chromosomal localization of human and mouse genes for hematopoietic prostaglandin D synthase."Eur.J.Biochem.. 267. 3315-3322 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Pinzar,E.I., et.al.: "Structural basis of hematopoietic prostaglandin D synthase activity elucidated by site-directed mutagenesis."J.Biol.Chem.. 27. 31239-31244 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Fujimori,K., et.al.: "Transcriptinal activation of the human hematopoietic prostagalndin D synthase gene in megakaryoblastic cells."J.Biol.Chem.. 275-51. 40511-40516 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Urade,Y.and Hayaishi,O.: "Biochemical, structural, genetic, physiological, and pathophysiological features of lipocalin-type prostaglandin D synthase."Biochim.Biophys.Acta. 1482. 259-271 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Urade,Y.and Hayaishi,O.: "Prostaglandin D synthase : structure and function."Vitamins and Hormones. 58. 89-120 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Pinzar,E.I., et.al.: "Prostaglandin D synthase gene is involved in the regulation of non-rapid eye movement sleep."Proc.Natl.Acad.Sci.USA. 97. 4903-4907 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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