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Construction of First-Principle Methodology for Predicting Shape and Size Distribution of Micelles

Research Project

Project/Area Number 12640495
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical chemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

KINOSHITA Masahiro  Institute of Advanced Energy, Associate Professor, エネルギー理工学研究所, 助教授 (90195339)

Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥4,200,000 (Direct Cost: ¥4,200,000)
Fiscal Year 2002: ¥300,000 (Direct Cost: ¥300,000)
Fiscal Year 2001: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 2000: ¥3,400,000 (Direct Cost: ¥3,400,000)
Keywordsmicelle / surfactant molecule / molecular assembly / RISM theory / protein / colloidal system / biological system / entropic excluded-volume effects / 積分方程式論 / 溶媒和自由エネルギー / 排除容積 / 臨界ミセル濃度 / 両親媒性分子 / 部分モル容積 / 生体高分子 / 自己組織化 / HNC方程式 / ブリッジ関数
Research Abstract

Research for biological systems such as the prediction of tertiary structures of proteins, which is similar to the micelle research in the methodology and solvent effects, has also been performed.
We have constructed a hybrid-type simulation method. It is a combination of the RISM theory (a statistical-mechanical theory for molecular fluids) for incorporating the solvent effects, the Monte Carlo simulated annealing for conformational sampling for a set of surfactant molecules, and a conventional thermodynamic method. It has been demonstrated for several simplified model surfactants to calculate the critical micelle concentration, micelle shape, and size distribution. It is being extended to more realistic models to elucidate why the average micelle size becomes larger as the temperature increases in cases of nonionic surfactants.
We propose a simple. efficient bridge correction of the RISM theory. By combining the modified RISM method with the Kirkwood-Buff theory, the partial molar volume is calculated for the 20 amino acids and for oligopeptides of glutamic acids in extended and α-helix conformations. The bridge correction drastically improves agreement between the calculated values and the experimental data.
The three-dimensional version of the integral equation theory is not applicable to the hybrid-type simulation method due to the heavy computational burden. However, it is very useful in detailed analyses of the microscopic solvation structure of a large, complicated solute molecule. As an example, we have examined the roles of the entropic excluded-volume effects in colloidal and biological systems. In particular, it has been shown that remarkably high selectivity arises in the lock and key steric interaction between macromolecules by the entropic excluded-volume effects alone.

Report

(4 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (62 results)

All Other

All Publications (62 results)

  • [Publications] Masahiro Kinoshita, Yuko Okamoto, Fumio Hirata: "Peptide Conformations in Alcohol and Water : Analysis by the Reference Interaction Site Model Theory"Journal of the American Chemical Society. 122(12). 2773-2779 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Takashi Imai, Masahiro Kinoshita, Fumio Hirata: "Salt Effect on Stability and Solvation Structure of Peptide : An Integral Equation Study"Bulletin of the Chemical Society of Japan. 73(5). 1113-1122 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Takashi Imai, Masahiro Kinoshita, Fumio Hirata: "Theoretical Study for Partial Molar Volume of Amino Acids in Aqueous Solution : Implication of Ideal Fluctuation Volume"The Journal of Chemical Physics. 112(21). 9469-9478 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ayori Mitsutake, Masahiro Kinoshita, Yuko Okamoto, Fumio Hirata: "Multicanonical Algorithm Combined with the RISM Theory for Simulating Peptides in Aqueous Solution"Chemical Physics Letters. 329(3,4). 295-303 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita: "Binary Fluid Mixture Confined between Macroparticles : Surface-Induced Phase Transition and Long-Range Surface Forces"Chemical Physics Letters. 325(1,2,3). 281-287 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita: "Effects of a Trace Amount of Hydrophobic Molecules on Phase Transition for Water Confined between Hydrophobic Surfaces : Theoretical Results for Simple Models"Chemical Physics Letters. 326(5,6). 551-557 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 木下正弘, 岡本祐幸, 平田文男: "タンパク質立体構造形成における溶媒効果"生物物理. 40(6). 374-378 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ken Kuwamoto, Masahiro Kinoshita: "Interaction between Solute Molecules in Medium Density Solvents"Molecular Physics. 98(11). 725-736 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Andriy Kovalenko, Fumio Hirata, Masahiro Kinoshita: "Hydration Structure and Stability of Met-Enkephalin Studied by a Three-Dimensional Reference Interaction Site Model with a Repulsive Bridge Correction and a Thermodynamic Perturbation Method"The Journal of Chemical Physics. 113(21). 9830-9836 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Yamamoto, Masahiro Kinoshita, Takashi Kikuchi: "Structure of the Pt(111)/Liquid Interface : A First-Principles/RHNC Calculation"Electrochimica Acta. 46(2,3). 165-174 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita: "Long-Range Interaction between Hydrophilic Surfaces Immersed in a Hydrophobic Fluid Containing a Hydrophilic Component at Low Concentration"Chemical Physics Letters. 333(3,4). 217-223 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita, Yoshiki Sugai: "Methodology for Predicting Approximate Shape and Size Distribution of Micelles"Studies in Surface Science and Catalysis. 132. 109-112 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita, Yuko Okamoto, Fumio Hirata: "Solvent Effects on Conformational Stability of Peptides : RISM Analyses"Journal of Molecular Liquids. 90. 195-204 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yuichi Harano, Takashi Imai, Andriy Kovalenko, Masahiro Kinoshita, Fumio Hirata: "Theoretical Study for Partial Molar Volume of Amino Acids and Polypeptides by the Three-Dimensional Reference Interaction Site Model"The Journal of Chemical Physics. 114(21). 9506-9511 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita, Takashi Imai, Andriy Kovalenko, Fumio Hirata: "Improvement of the Reference Interaction Site Model Theory for Calculating the Partial Molar Volume of Amino Acids and Polypeptides"Chemical Physics Letters. 348(3,4). 337-342 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 神尾和教, 木下正弘: "エントロピー駆動の秩序構造形成に関する統計力学的解析"化学工学論文集. 27(6). 683-689 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 木下正弘, 岡本祐幸, 平田文男: "水中およびアルコール中におけるペプチドの立体構造解析"蛋白質 核酸 酵素. 46(6). 713-718 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita, Teppei Oguni: "Depletion Effects on the Lock and Key Steric Interactions between Macromolecules"Chemical Physics Letters. 351(1,2). 79-84 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita: "Spatial Distribution of a Depletion Potential between a Big Solute of Arbitrary Geometry and a Big Sphere Immersed in Small Spheres"The Journal of Chemical Physics. 116(8). 3493-3501 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita: "Interaction between Large Spheres Immersed in Small Spheres : Remarkable Effects Due to a Trace Amount of Medium-Sized Spheres"Chemical Physics Letters. 353(3,4). 259-269 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Takashi Imai, Hiroyasu Nomura, Masahiro Kinoshita, Fumio Hirata: "Partial Molar Volume and Compressibility of Alkali Halide Ions in Aqueous Solution : Hydration Shell Analysis with an Integral Equation Theory of Molecular Liquids"The Journal of Physical Chemistry B. 106(29). 7308-7314 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita, Yoshiki Sugai: "Methodology of Predicting Approximate Shapes and Size Distribution of Micelles : Illustration for Simple Models"Journal of Computational Chemistry. 23(15). 1445-1455 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita: "Interaction between Surfaces with Solvophobicity or Solvophilicity Immersed in Solvent : Effects Due to Addition of Solvophobic or Solvophilic Solute"The Journal of Chemical Physics. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita: "Roles of Entropic Excluded-Volume Effects in Colloidal and Biological Systems : Analyses Using the Three-Dimensional Integral Equation Theory"Chemical Engineering Science. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 木下正弘: "化学フロンティア(7),生体系のコンピュータ・シミュレーション"化学同人. 262 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro Kinoshita: "Molecular Theory of Solvation"Kluwer Academic Publisher (The Netherlands) (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA, Yuko OKAMOTO, Fumio HIRATA: "Peptide Conformations in Alcohol and Water: Analysis by the Reference Interaction Site Model Theory"Journal of the American Chemical Society. 122(12). 2773-2779 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Takashi IMAI, Masahiro KINOSHITA, Fumio HIRATA: "Salt Effect on Stability and Solvation Structure of Peptide: An Integral Equation Study"Bulletin of the chemical Society of Japan. 73(5). 1113-1122 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Takashi IMAI, Masahiro KINOSHITA, Fumio HIRATA: "Theoretical Study for Partial Molar Volume of Amino Acids in Aqueous Solution: Implication of Ideal Fluctuation Volume"The Journal of Chemical Physics. 112(21). 9469-9478 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ken KUWAMOTO, Masahiro KINOSHITA: "Interaction between Solute Molecules in Medium Density Solvents"Molecular Physics. 98(11). 725-736 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA: "Binary Fluid Mixture Confined between Macroparticles: Surface-Induced Phase Transition and Long-Range Surface Forces"Chemical Physics Letters. 325(1,2,3). 281-287 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA: "Effects of a Trace Amount of Hydrophobic Molecules on Phase Transition for Water Confined between Hydrophobic Surfaces: Theoretical Results for Simple Models"Chemical Physics Letters. 326(5,6). 551-557 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ayori MITSUTAKE, Masahiro KINOSHITA, Yuko OKAMOTO, Fumio HIRATA: "Multicanonical Algorithm Combined with the RISM Theory for Simulating Peptides in Aqueous Solution"Chemical Physics Letters. 329(3,4). 295-303 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Andriy KOVALENKO, Fumio HIRATA, Masahiro KINOSHITA: "Hydration Structure and Stability of Met-encephalin Studied by a Three-Dimensional Reference Interaction Site Model with a Repulsive Bridge Correction and a Thermodynamic Perturbation Method"The Journal of Chemical Physics. 113(21). 9830-9836 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro YAMAMOTO, Masahiro KINOSHITA, Takashi KAKIUCHI: "Structure of the Pt(111)/Liquid Interface: A First Principlcs/RHNC Calculation"Electrochimica Acta. 46(2,3). 165-174 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA: "Long-Range Interaction between Hydrophilic Surfaces Immersed in a Hydrophobic Fluid Containing a Hydrophilic Component at Low Concentration"Chemical Physics Letters. 333(3,4). 217-223 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA, Yoshiki SUGAI: "Methodology for Prediction Approximate Shape and Size Distribution of Micelles"Studies in Surface Science and Catalysis. 132. 109-112 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA, Yuko OKAMOTO, Fumio HIRATA: "Solvent Effects on Conformational Stability of Peptides: RISM Analyses"Journal of Molecular Liquids. 90. 195-204 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yuichi HARANO, Takashi IMAI, Andriy KOVALENKO, Masahiro KINOSHITA, Fumio HIRATA: "Theoretical Study for Partial Molar Volume of Amino Acids and Polypeptides by the Three-Dimensional Reference Interaction Site Model"The Journal of Chemical Physics. 114(21). 9506-9511 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA, Takashi IMAI, Andriy KOVALENKO, Fumio HIRATA: "Improvement of the Reference Interaction Site Model Theory for Calculating the Partial Molar Volume of Amino Acids and Polypeptides"Chemical Physics Letters. 348(3,4). 337-342 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Kazunori KAMIO, Masahiro KINOSHITA: "Statistical-Mechanical Analysis on Entropically Driven Formation of Ordered Structure (in Japanese)"Kagaku Kogaku Ronbunshu. 27(6). 683-689 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA, Teppei OGUNI: "Depletion Effects in the Lock and Key Steric Interactions between Macromolecules"The Journal of Chemical Physics. 351(1,2). 79-84 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA: "Spatial Distribution of a Depletion Potential between a Big solute of Arbitrary Geometry and a Big Sphere Immersed in Small Spheres"The Journal of Chemical Physics. 116(8). 3493-3501 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA: "Interaction between Large Spheres Immersed in Small Spheres: Remarkable Effects Due to a Trace Amount of Medium-sized Spheres"Chemical Physics Letters. 553(3,4). 259-269 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Takashi IMAI, Hiroyasu NOMURA, Masahiro KINOSHITA, Fumio HIRATA: "Partial Molar Volume and Compressibility of Alkali Halide Ions in Aqueous Solution: Hydration Shell Analysis with an Integral Equation Theory of Molecular Liquids"The Journal of Physics Chemical B. 106. 7308-7314 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA, Yoshiki SUGAI: "Methodology of Predicting Approximate Shapes and Size Distribution of Micelles: Illustration for Simple Models"Journal of Computational Chemistry. 23. 1445-1455 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA: "Interaction between Surfaces with Solvophobicity or Solvophilicity Immersed in Solvent: Effects Due to Addition of Solvophobic of Solvophilic Solute"The Journal of Chemical Physics, in press..

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masahiro KINOSHITA: "Roles of Entropic Excluded-Volume Effects in Colloidal and Biological Systems: Analyses Using the Three-Dimensional Integral Equation Theory"Chemical Engineering Science. in press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Imai, H.Nomura, Masahiro Kinoshita, F.Hirata: "Partial Molar Volume and Compressibility of Alkali Halide Ions in Aqueous Solution : Hydration Shell Analysis with an Integral Equation Theory of Molecular Liquids"The Journal of Physical Chemistry B. 106・29. 7308-7314 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masahiro Kinoshita, Y.Sugai: "Methodology of Predicting Approximate Shapes and Size Distribution of Micelles : Illustration for Simple Models"Journal of Computational Chemistry. 23・15. 1445-1455 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masahiro Kinoshita: "Interaction between Surfaces with Solvophobicity or Solvophilicity Immersed in Solvent : Effects Due to Addition of Solvophobic or Solvophilic Solute"The Journal of Chemical Physics. (in press).

    • Related Report
      2002 Annual Research Report
  • [Publications] Masahiro Kinoshita: "Roles of Entropic Excluded-Volume Effects in Colloidal and Biological Systems : Analyses Using the Three-Dimensional Integral Equation Theory"Chemical Engineering Science. (in press).

    • Related Report
      2002 Annual Research Report
  • [Publications] 木下正弘: "化学フロンティア(7)、「生体系のコンピュータ・シミュレーション」、11章『タンパク質の水和と構造安定性』"化学同人. 131-139 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masahiro Kinoshita: "Spatial Distribution of a Depletion Potential between a Big Solute of Arbitrary Geometry and a Big Sphere Immersed in Small Spheres"The Journal of Chemical Physics. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Masahiro Kinoshita: "Interaction between Large Spheres Immersed in Small Spheres : Remarkable Effects due to a Trace Amount of Medium-Sized Spheres"Chemical Physics Letters. 353(3,4). 259-269 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Masahiro Kinoshita, Teppei Oguni: "Depletion Effects on the Lock and Key Steric Interactions between Macromolecules"Chemical Physics Letters. 351(1,2). 79-84 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 神尾和教, 木下正弘: "エントロピー駆動の秩序構造形成に関する統計力学的解析"化学工学論文集, 特集「液相系における構造形成と機能化」. 27(6). 683-689 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Masahiro Kinoshita, Takashi Imai, Andriy Kovalenko, Fumio Hirata: "Improvement of the Reference Interaction Site Model Theory for Calculating the Partial Molar Volume of Amino Acids and Polypeptides"Chemical Physics Letters. 348(3,4). 337-342 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Harano, T.Imai, A.Kovalenko, Masahiro Kinoshita, F.Hirata: "Theoretical Study for Partial Molar Volume of Amino Acids and Polypeptides by the Three-Dimensional Reference Interaction Site Model"The Journal of Chemical Physics. 114(21). 9506-9511 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 木下正弘: "化学フロンティア(7),「生体系のコンピューターシミュレーション」"化学同人(印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 木下正弘,岡本祐幸,平田文男: "タンパク質立体構造形成における溶媒効果"生物物理. Vo.40,No.6. 374-378 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Masahiro Kinoshita and Yoshiki Sugai: "Methodology for predicting approximate shape and size distribution of micelles"Studies in Surface Science and Catalysis. Vol.132. 109-112 (2001)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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