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Comparative analysis of hibernation-specific genes between hibernating and nonhibernating mammals

Research Project

Project/Area Number 12640600
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 遺伝
Research InstitutionKitasato University

Principal Investigator

TAKAMATSU Nobuhiko  School of Science, Kitasato University Assistant Professor, 理学部, 助教授 (40206876)

Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 2001: ¥1,500,000 (Direct Cost: ¥1,500,000)
Keywordsmammalian hibernation / gene structure / transcriptional regulation / pseudogene / chipmunk / tree squirrel / HNF-1 / HNF-4 / プロモーター / 哺乳動物 / 肝臓
Research Abstract

In the squirrel family, the genes for hibernation-specific protein, HP-20, 25 and -27, can be detected, not only in hibernating species (chipmunk and ground squirrel), but also in a nonhibernating species (tree squirrel). However, their expression is limited to the hibernating species. In this study, to reveal the molecular mechanisms underlying the liver-specific transcription of the chipmunk HP-20, -25 and -27 genes, and the causes for the abortion of expression of the corresponding genes in tree squirrel, the genomic clones for the chipmunk HP-20, -25 and -27 genes and tree squirrel HP-25 and -27 genes were isolated, and their gene structures and promoter activities were analyzed.
The chipmunk HP-20, -25 and -27 genes share conserved gene structures, and are considered to be generated by gene duplication. For the chipmunk HP-25 gene, the 80 bp 5' upstream sequence is necessary for its liver-specific transcription, and HNF-4 which binds to the sequence from -75 to -46 plays an important role. On the other hand, the tree squirrel HP-25 gene has a mutation in the HNF-4 binding site, resulting in the abortion of HNF-4 binding, which was considered to be the major cause for the lack of HP-25 expression. For the chipmunk HP-20 gene, the 57 bp 5' upstream sequence is necessary for its liver-specific transcription, and HNF-1 which binds to the sequence from -52 to -26 plays an important role. For the chipmunk HP-27 gene, the 160 bp 5' upstream sequence is necessary for its liver-specific transcription, and when the sequence from -160 to -130 was replaced with the corresponding tree squirrel sequence, almost no promoter activity was observed.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (9 results)

All Other

All Publications (9 results)

  • [Publications] Kojima, M. et al.: "HNF-4 plys a pivotal role in the liver-specific tronscription of the chipmunk HP-25 gene"Eur.J.Biochem.. 267. 4635-4641 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ono, M.et al.: "HNF-1 regulates the liver-specific tronscription of the chipmunk HP-20 gene"Gene. 277. 121-127 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kojima, M. et al.: "The tree squirrel HP-25 gene is a pseudogene"Eur.J.Biochem.. 268. 5997-6002 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kojima, M., Takamatsu, N., Ishi, T., Kondo, N. and Shiba, T.: "HNF-4 plays a pivotal role in the liver-specific transcription of the chipmunk HP-25 gene"Eur. J . Biochem.. 267. 4635-4641 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ono, M., Hosoe, Y., Azuma, S., Shoji, M., Nara, K., Kondo, N., Shiba, T. and Takamatsu, N.: "HNF-1 regulates the liver-specific transcription of the chipmunk HP-20 gene"Gene. 277. 121-127 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kojima, M., Shiba, T., Kondo, N. and Takamatsu, N.: "The tree squirrel HP-25 gene is a pseudogene"Eur. J . Biochem.. 268. 5997-6002 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kojima, M. et al.: "The tree squirrel HP-25 gene is a pseudogene"Eur. J. Biochem.. 268. 5997-6002 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ono, M.et al.: "HNF-1 regulates the liver-specific transcription"Gane. 277. 121-127 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Kojima et al.: "HNF-4 plays a pivotal role in the liver-specific transcription of the chipmunk HP-25 gene."Eur.J.Biochem.. 267. 4635-4641 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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