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Molecular Anatomy of Polysaccharide-degrading Enzymes from Extremophiles

Research Project

Project/Area Number 12650783
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物・生体工学
Research InstitutionTokyo Institute of Technology

Principal Investigator

NAKAMURA Satoshi  Tokyo Institute of Technology, Department of Bioengineering, Professor, 大学院・生命理工学研究科, 教授 (50227899)

Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2002: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 2001: ¥1,300,000 (Direct Cost: ¥1,300,000)
Fiscal Year 2000: ¥1,700,000 (Direct Cost: ¥1,700,000)
KeywordsBiotechnology / Protein / Glycanase / Extremophile / Xylanase / Alkaliphilic Bacillus sp. / Catalytic domain / Xylan-binding domain / 触媒ドメイン / キシラン結合ドメイン / ファージディスプレイ / 進化分子工学 / タンパク質工学 / 反応至適pH
Research Abstract

Many microorganisms have been discovered at unusual environments such as extreme temperature, pH and salinity. These microorganisms are called "extremophiles" that include thermophiles, psychrophiles, acidophiles, alkaliphiles and halophiles. "Extremozymes" are the enzymes produced by extremophiles and able to function under the extreme conditions. Extremozymes have tremendous potential for industrial applications as well as academic directions. Hemicellulose, originally named for the fraction extracted from plant cell walls with dilute alkali, is one of the most abundant polysaccharide in plant cell walls. Beta-1,4-Xylan is the major component of hemicelluloses ; it accounts for approximately 10 to 30% of the total dry weight of wood. Xylan is a heterogeneous polysaccharide comprising a backbone of beta-1,4- linked xylopyranose units with branches containing acetyl, L-arabino-furanosyl and glucopyranosyl residues. Xylanase (1,4-beta-D-xylan xylanohydrolase ; EC 3.2.1.8) catalyzes the hydrolysis of xylan to xylooligosaccharides and xylose. Alkaliphilic Bacillus sp. strain 41M-1 secretes a xylanase (xylanase J) that has an alkaline pH optimum. Xylanase J is a multidomain enzyme that consists of a family 11/G catalytic domain and a xylan-binding domain. Mutational analyzes revealed some amino acid residues that contribute to catalytic activity, alkaliphily and xylan-binding activity of xylanase J.

Report

(4 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] K.Endo et al.: "Molecular Cloning of a Chitinase Gene from Newly Isolated Alkaliphilic Nocardiopsis sp. Strain F96"Extremophiles. (In press). (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Komatsu et al.: "Thermostable Synthetic Hemoprotein"Chem.Lett.. 32. 108-109 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] R.Yatsunami et al.: "A Novel Chitosanase from Bacillus sp. Strain K17 : Gene Cloning and Expression in Escherichia coli"Nucleic Acids Res.Suppl.. 2. 227-228 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 中村 聡: "グリーンバイオケミストリー-ポストゲノム時代を迎え,対話を始めた化学と社会-"現代化学. 2002年4月号. 14-19 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Matsuo et al.: "Cloning and Expression of the Ferredoxin Gene from Extremely Halophilic Archaeon Haloarcula japonica Strain TR-1"Bio Metal. 14. 135-142 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Takahashi et al.: "Purification and Some Properties of a Basic Xylanase Produced by Thermoalkaliphilic Bacillus sp. Strain TAR-1"Biosci.Biotechnol.Biochem.. 64. 887-890 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 船越弘毅ほか: "極限環境微生物とその利用"講談社サイエンティフィク. 180 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] K. Endo et al.: "Molecular Cloning of a Chitinase Gene from Newly Isolated Alkaliphilic Nocardiopsis sp. Strain F96"Extremophiles. in press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T. Komatsu et al.: "Thermostable Synthetic Hemoprotein"Chem. Lett.. 32. 108-109 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] R. Yatsunami et al.: "A Novel Chitosanase from Bacillus sp. Strain K17 : Gene Cloning and Expression in Escherichia coli"Nucleic Acids Res. Suppl.. 2. 227-228 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T. Matsuo et al.: "Cloning and Expression of the Ferredoxin Gene from Extremely Halophilic Archaeon Haloarcula japonica Strain TR-1"BioMetals. 14. 135-142 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Takahashi et al.: "Purification and Some Properties of a Basic Xylanase Produced by Thermoalkaliphilic Bacillus sp. Strain TAR-1"Biosci. Biotechnol. Biochem.. 64. 887-890 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] R.Yatsunami et al.: "A Novel Chitosanase from Bacillus sp. Strain K17: Gene Cloning and Expression in Escherichia coil"Nucleic Acids Res.Suppl.. 2. 227-228 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Matsuo et al.: "Cloning and Expression of Haloarculajaponica Ferredoxin Gene, and Characterization of Recombinant Proteins"Porphyrins. 11. 108-108 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Komatsu et al.: "Thermostable Synthetic Hemoprotein"Chem. Lett.. 32. 108-109 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] K.Endo et al.: "Molecular Cloning of a Chitinase Gene from Newly Isolated Alkaliphilic Nocardiopsis sp.Strain F96"Extremophiles. (In press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 中村 聡: "グリーンバイオケミストリー -ポストゲノム時代を迎え,対話を始めた化学と社会-"現代化学. 2002年4月号. 14-19 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 中村 聡: "バイオマテリアルへの期待"化学装置. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 大倉一郎ほか: "新版 生物工学基礎"講談社サイエンティフィク. 150 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Matsuo et al.: "Cloning and Expression of the Ferredoxin Gene from Extremely Halophilic Archaeon Haloarcula japonica Strain TR-1"BioMetals. 14. 135-142 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 鈴木麻美絵ほか: "大腸菌O157ベロ毒素遺伝子検出系の構築"生理学技術研究会報告(生理学研究所技術課・編). 23. 116-117 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] R.Yatsunami et al.: "Gene clusters encoding ATP sythase of Haloarcula japonica strain TR-1"Nucleic Acids Res. Suppl.. 1. 51-52 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 中村 聡: "極限環境微生物と極限酵素"BIO INDUSTRY. 18. 14-20 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 八波利恵, ほか: "生体内分子と自己修復"科学と教育. 49. 122-125 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Fukazawa et al.: "Chitin and Chitosan, Chitin and Chitosan in Life Science(ed.by T.Uragami, K.Kurita and T.Fukamizo)"Kodansha Scientific Ltd.. 600 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] R.Yatsunami et al.: "A Novel Bacteriohodopsin-like Protein from Haloarcula japonica Strain TR-1 : Gene Cloning, Sequencing and Transcription Analysis"Extremophiles. 4. 109-114 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] D.Sugimori et al.: "Purification and Characterization of a Ferredoxin from Haloarcula japonica Strain TR-1"BioMetals. 13. 13-28 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Takahashi et al.: "Purification and Some Properties of a Basic Xylanase Produced by Thermoalkaliphilic Bacillus sp.Strain TAR-1"Biosci.Biotechnol.Biochem.. 64. 887-890 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] N.Lu et al.: "Crystallization and Initial X-ray analysis of Alkaline Xylanase"Acta Cryst.. D56. 464-465 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Dake et al.: "Microbial Degradation of Disodium Terephthalate by Alkaliphilic Dietzia sp.Strain GS-1"Biosci.Biotechnol.Biochem.. 64. 2709-2711 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] R.Yatsunami et al.: "The Gene Encoding a Novel halorhodopsin-like Protein of Extremely Halophilic Archaeon Haloarcula japonica Strain TR-1"Nucleic Acids Symp.Ser.. 44. 1-2 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 中村聡 ほか(共著): "極限環境微生物とその利用"講談社サイエンティフィク. 150 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 中村聡 ほか(分担): "バイオ機器分析入門(相澤益男,山田秀徳・編)"講談社サイエンティフィク. 200 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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