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Molecular Design of Multinuckear Metal -Ion-Centers for the Efficient Non-enzymatic Hydrolyses of Nucleic Acidsand Peptides by Acid-Base Co-catalysis

Research Project

Project/Area Number 12650845
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Synthetic chemistry
Research InstitutionThe University of Tokyo

Principal Investigator

YASHIRO Morio  Graduate School of Engineering, The University of Tokyo, Associate Professor, 大学院・工学系研究科, 助教授 (30192785)

Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2001: ¥1,600,000 (Direct Cost: ¥1,600,000)
Fiscal Year 2000: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywordsacid-base catalyst / cooperative catalysis / antificial enzyme / hydrolysis / multinuclear metal complex / 亜鉛(II)錯体 / リン酸エステル / RNA
Research Abstract

Detailed solution structures of two catalysis, which we have find to hydrolyze RNA very efficiently under neutral aqueous solution, were examined ; (Zn (II))_2-L1 (1) (L1=N, N, N^1, N-tetrakis (2-pyridylmethyl) -1, 3-diamino-2-propanol and (Zn (II))_2-L2 (2) (L2=N, N, N^1, N-tetrakis (2-pyridylmenthyl) -1, 3-bis (aminomethl) benzene. L1 and L2 differ only in the structure of the linker moiety, which connects two bis (2-pyridylmethyl) amine units. The rate constants for the RNA hydrolysis by two complexes showed quite different pH profiles from rach other, which can be attributed to their very different solution structures. Because acid-base co-catalysis is strongly suggested only for the complex 2, new dinuclear zinc (II) complexes, having similar structures to the complex 2 but the two zinc (II) is in the unequivalent environment, were disigned. (Zn (II))_2-L3 (L3=N- (2-aminoethyl)-N, N^1, N-tris (2-pyridylmethlyl) -1, 3-bis (aminomethyl) benzene) and (Zn (II))_2-L4 (L4=N- (2-hydroxylethyl) -N, N^1, N-tris (2-pyridylmethyl)-1, 3-bis (aminomethyl) benzene). It was found that, on the basis of these molecular design, acidity of coordinated water molecules could be regukated, and, therefore, the catalytic properties of zinc (II) complexes as RNases could also be regulated. On the other hand, peptide hydrolyses under mild conditions were found to be promoted very efficiently, by the cooperationof an internal hydroxy group in the serine residue and a metal ion (zinc (II), cadmium (II), copper (II) or their complexes). The effect of the solvent and the kind of the metal ion on the reaction were studied. Highly sequence-specific hydrolysis of peptide was found to be achieved by choosing an appropriate solvent.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] T.Takarada, M.Yashiro, M.Komiyama: "Catalytic Hydrolysis of Dipeptides by Cerium (IV)"Chemistry, Eur. J.. 6. 3906-3913 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Yashiro: "Catalytic and Selective Conversion of Glycine into Serine by the Reaction with Formaldehyde in a Neutral Aqueous Solution"Bull. Chem. Soc. Jpn.. 75(in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y.Fujii, T.Kiss, T.Gajda, X.-S.Tan, T.Sato, Y.Nakano, Y.Hayashi, M.Yashiro: "Copper(II)-cis, cis-1,3,5-tetraaminocyclohexane Complex promoted Hydrolysis of Dipeptideds : Kinetic and Structural Studies"submitted for publication.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Yashiro, K.Masuda, Y.Fujii: "Sequence Specific Hydrolysis of Dipeptides under Alkaline Conditions"submitted for publication.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Yashiro, Y.Sonobe, A.Yamamura, T.Takarada, M.Komiyama: "Metal-Ion-Assisted Hydrolysis of Dipeptides Involving a Serine Residue in a Neutral Aqueous Solution"submitted for publication.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Yashiro, M.Higuchi, Y.Washizu, M.Komiyama: "Effect of Alkaline Earth Metal Ions on the Phosphodiester Hydrolysis of RNA"submitted for publication.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Takarada, M. Yashiro, M. Komiyama: "Catalytic hydrolysis of Dipeptides by Cerium (IV)"Chemistry, Eur. J. 6. 3906-3913 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Yashiro: "Catalytic and Selective Conversion of Glycine into Serine by the Reaction with Formaldehyde in a Neutral Aqueous Solution"Bull. Chem. Soc. Jpn. 75 (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y. Fujii, T. Kiss, T. Gajda, X. -S. Tan, T. Sato, Y. Nakano, Y. Hayashi, M. Yashiro: "Copper (II)-cis, cis-1, 3, 5-tetraaminocyclohexane complex promoted Hydrolysis of Dipeptideds : Kinetic and Suructural Studies"(submitted for publication.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Yashiro, K. Masuda, Y. Fujii: "Sequence Specific Hydrolysis of Dipeptides under Alkaline Conditions"(submitted for publication.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Yashiro, Y. Sonobe, A. Yamamura, T. Takarada, M. Komiyama: "Metal-Ion-Assisted Hydrolysis of Dipeptides Involving a Serine Residue in a Neutral Aqueous Solution"(submitted for publication.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Yashiro, M. Higuchi, Y. Washizu, M. Komiyama: "Effect of Alkaline Earth Metal Ions on the Phosphodiester Hydrolysis of RNA"(submitted for publication.).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Takarada, M.Yashiro, M.Komiyama: "Catalytic Hydrolysis of Dipeptides by Cerium(IV)"Chemistry, Eur. J.. 6. 3906-3913 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Yashiro: "Catalytic and Selective Conversion of Glycine into Serine by the Reaction with Formaldehyde in a Neutral Aqueous Solution"Bull. Chem. Soc. Jpn.. 75(in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Fujii, T.Kiss, T.Gajda, X.-S.Tan, T.Sato, Y.Nakano, Y.Hayashi, M.Yashiro: "Copper(II)-cis, sic-1, 3, 5-tetraaminocyclohexane Complex promoted Hydrolysis of Depeptideds : Kinetic and Structural Studies"submitted for publication.

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Yashiro, K.Masuda, Y.Fujii: "Sequence Specific Hydrolysis of Depiptides under Alkaline Conditions"submitted for publication.

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Yashiro, Y.Sonobe, A.Yamamura, T.Takarada, M.Komiyama: "Metal-Ion-Assisted Hydrolysis of Dipeptides Involving Serine Residue in a Neutral Aqueous Solution"submitted for publication.

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Yashiro, M.Higuchi, Y.Washizu, M.Komiyama: "Effect of Alkaline Earth Metal Ions on the Phosphodiester Hydrolysis of RNA"submitted for publication.

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Takarada,M.Yashiro,and M.Komiyama: "Catalytic Hydrolysis of Peptides by Cerium(IV)"Chemistry,A European Journal. 6(21). 3906-3913 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Kaneiwa,K.Onaka,A.Ishikubo,M.Yashiro,and M.Komiyama: "Dinuclear Zinc(II)Complexes for RNA Hydrolysis"to be submitted.

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Kaneiwa,M.Yashiro,and M.Komiyama: "Unsymmetrical Dinuclear Zn(II) Complexes.Unique Cooperation of Two Zn(II)in RNA Hydrolysis"to be submitted.

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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