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Crystal structure and functional analysis of 2-oxacid : ferredoxin oxidoreductase

Research Project

Project/Area Number 12660067
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionTHE UNIVERSITY OF TOKYO

Principal Investigator

WAKAGI Takayoshi  Graduate School of Agriculture and Life Sciences, The University of Tokyo, Associate professor, 大学院・農学生命科学研究科, 助教授 (70175058)

Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2001: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 2000: ¥1,800,000 (Direct Cost: ¥1,800,000)
Keywords2-oxoacid / ferredoxin / oxidoreductase / substrate specificity / thermophile / archaea / Sulfolobus / Aeropyrum / 耐熱性酵素
Research Abstract

2-Oxoacid : ferredoxin oxidoreductases (OFORs) from Sulfolobus sp. Strain 7 and from Aeropyrum were used for making crystals for X-ray crystallography. However, some of them formed crystals which were found to diffract X-ray with very low resolution.
Five possible active site residues that recognize 2-oxoacid in Sulfolobus OFOR were selected from the comparison of OFORs from Sulfolobus and other sources in terms of teriary structure and amino acid alignment. To eleuidate the role of these residues, they were subjected to site-directed mutagenesis to obtain a serious of variant enzymes. Arg344 and Thr353 of the subunit-a were essential and important, respectively. Lys49 and Leu123 of the subunit-b were responsible for the recognition of 2-oxoglutarate and pyruvate, respectively. A GXXGXG motif, supposed to bind to CoA, was examined. Each of the Gly was essential for enzyme activity, suggesting the importance of the motif.
During the course of OFOR research, an enzyme capable of catalyzing both decarboxylation and oxidation of indolepyruvate has been discovered. The reaction was independent of ferredoxin or CoA, and its final product was indoleacetic acid. The enzyme was a molybdo-flavo-iron-sulfur protein with biotin.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (25 results)

All Other

All Publications (25 results)

  • [Publications] E.Fukuda, H.Kino, H.Matsuzawa, T.Wakagi: "Role of a highly conserved YPITP motif in 2-oxoacid : ferredoxin oxidoreductase"Eur. J. Biochem.. 268. 5639-5646 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Wakagi, E.Fukuda, Y.Ogawa, H.Kino, H.Matsuzawa: "A novel bifunctional molybdo-enzyme catalyzing both decarboxylation of indolepyruvate and oxidation of indoleacetaldehyde from a thermoacido philic archaeon, Sulfolobus sp. strain 7"FEBS Letters. 510. 196-200 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] E.Fukuda, T.Wakagi: "Substrate recognition by 2-oxoacid : ferredoxin oxidoreductase from a thermoacidophilic archaeon, Sulfolobus sp. strain 7"Biochim. Biophys. Acta. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K.Kojoh, E.Fukuda, H.Matsuzawa, T.Wakagi: "Zinc-coordination of aspartic acid-76 in Sulfolobus ferredoxin is not required for thermal stability of the molecule"J. Inorg. Biochem.. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 福田, 若木: "好熱性古細菌 2-オキソ酸:フェレドキシン酸化還元酵素の活性中心"生化学. 73・8. 888 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 福田, 若木: "好酸好熱性古細菌 Sulfolobus sp. strain 7の2-オキソ酸:フェレドキシン酸化還元酵素(OFOR)の2-オキソ酸認識部位"日本農芸化学会誌. 75. 314 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 西澤, 福田, 若木: "Aeropyrum pernixの二つの2-オキソ酸:フェレドキシン酸化還元酵素"日本農芸化学会誌. 75. 314 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 福田, 若木: "好酸好熱性古細菌Sulfolobus sp. 7の2-オキソ酸:フェレドキシン酸化還元酵素(OFOR)の構造と機能"日本農芸化学会誌. 74. 250 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 西澤, 福田, 若木: "超好酸好熱性古細菌Aeropyrum pernixの2-オキソ酸:フェレドキシン酸化還元酵素に関する研究"日本農芸化学会誌. 74. 250 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] E. Fukufa, H. Kino, H. Matsuzawa, T. Wakagi: "Role of a highly conserved YPITP motif in 2-oxoacid : ferred-oxin oxidoreductase"Eur. J. Biochem. 268. 5639-5646 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Wakagi, E. Fukuda, Y. Ogawa, H. Kino, H. Matsuzawa: "A novel bigunctional molybdo-enzyme catalyzing both decarboxylation of indolepyruvate and oxidation of indoleacetaldehyde from a thermoacidophilic archaeon, Sulfolobus sp. strain 7"FEBS letters. 510. 196-200 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] E. Fukuda, T. Wakagi: "Substrate recognition by 2-oxoacid : ferredoxin oxidoreductase from Sulfolobus sp. strain 7"Biochim. Biophys. Acta. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K. Kojoh, E. Fukuda, H. Matsuzawa, T. Wakagi: "Zinc-coordination of aspartic acid-76 in Sulfolobus ferredoxin is not required for thermal stability of the molecule"J. Inorg. Biochem. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] B.Fukuda, H.Kino, H.Matsuzawa, T.Wakagi: "Role of a highly conserved YPITP motif in 2-oxoacid : ferredoxin oxidoreductase"Eur. J. Biochem.. 268. 5639-5646 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Wakagi, E.Fukuda, Y. Ogawa, H.Kino, H.Matsuzawa: "A novel bifunctional molybdo-enzyme catalyzin both decarboxylation of indolepyruvate and oxidation of indoleacetaldehyde from a thermoacidophilic archaeon.Sulfolobus SD.strain 7"FEBS Letters. 510. 196-200 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Kojoh, E.Fukuda, H.Matsuzawa, T.Wakagi: "Zinc-coordination of aspartic acid-76 in Sulfolobus ferredoxin is not required for thermal stability of the molecule"J. Inorg. Biochem.. (In press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 福田, 若木: "好熱性古細菌2-オキソ酸:フェレドキシン酸化還元酵素の活性中心"生化学. 73・8. 888 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 福田, 若木: "好酸好熱性古細菌Sulfolobus sp. 7の2-オキソ酸:フェレドキシン酸化還元酵素(OFOR)の2-オキソ酸認識部位"日本農芸化学会誌. 75. 314 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 西澤, 福田, 若木: "Aeropyrum pernixの二つの2-オキソ酸:フェレドキシン酸化還元酵素"日本農芸化学会誌. 75. 314 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 福田, 若木: "好酸好熱性古細菌Sulfolobus sp. strain 7の2-オキゾ酸:フェレドキシン酸化還元酵素(OFOR)の構造と機能"日本農芸化学会誌. 74. 250 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] 西澤, 福田, 若木: "超好酸好熱性古細菌Aeropyrum pernixの2-オキソ酸:フェレドキシン酸化還元酵素に関する研究"日本農芸化学会誌. 74. 250 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] 福田英理子: "遺伝子の効率的な発現系を用いた好熱性古細菌由来の酸化還元酵素の機能解析"第23回日本分子生物学会年回プログラム・講演要旨集. 759 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 福田英理子: "好熱性古細菌Sulfolobus sp.strain 7の2-オキソ酸:フェレドキシン酸化還元酵素(OFOR)の構造と機能"日本農芸化学会誌. 74. 250 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 西澤由美恵: "好熱性古細菌Aeropyrum pernixの2-オキソ酸:フェレドキシン酸化還元酵素に関す"日本農芸化学会誌. 74. 250 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 仮谷俊博: "好熱性古細菌Sulfolobus sp.strain 7フェレドキシンの亜鉛結合部位の研究"日本農芸化学会誌. 74. 250 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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