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Transcriptional regulatory network of genes for carbon concentrating mechanisms

Research Project

Project/Area Number 12660300
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

FUKUZAWA Hideya  Kyoto University, Graduate School of Biostudies, Associate Professor, 生命科学研究科, 助教授 (30183924)

Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2001: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 2000: ¥2,100,000 (Direct Cost: ¥2,100,000)
KeywordsChamydomonas / carbon dioxide / carbonic anhydrase / chloroplast envelope / zinc-finger / macroarray / photorespiration / signal transduction / CO_2センサー / 光合成 / 転写因子 / トランスポーター / ストレス応答 / 順化 / EST / cDNAマクロアレイ / ジンクフィンガードメイン / CO_2輸送濃縮
Research Abstract

Chlamydomonas reinhardtii can acclimate to environmental stresses such as low CO_2-supply, high-light by inducing a set of genes for a carbon-concentrating mechanism (CCM) through putative signal transduction pathways. Expression of several CCM-related genes, Cahl coding for a periplasmic carbonic anhydrase (CA), Mca for a mitochondrial CA and Ccpl for a chloroplast envelope protein LIP-36, is induced by lowering CO_2. This acclimation to CO_2-limiting conditions suggests the existence of sensory mechanisms by which cells perceive the shortage of CO_2 and pathways by which the signal is transduced into the specific gene regulation. We have cloned a nuclear regulatory gene, Ccml, which complements the mutation in the pleiotropic high-CO_2 requiring mutant C16 (Fukuzawa et.al. 2001). Ccml is constitutively expressed both in high- and low-CO_2 conditions. His-54 in the zinc-finger motif of CCM1 is essential to its regulatory function. To isolate target genes, which are controlled by CCM1, we have developed cDNA macroarray containing 10,368 EST (Fukuzawa et al.). RNA samples from WT cells cultured in high-CO_2 or low-CO_2 and also from the low-CO_2-acclimated C16 were labeled with ^<33>P-dCTP and hybridized with cDNA array membranes. Fifty-nine low-CO_2 inducible EST clones were not induced in the C16 mutant, suggesting that these are regulated by CCM1l. Time-dependent expression patterns of EST clones enabled us to detect low-CO_2 inducible (Lci) genes containing those for photorespiration or ion-transporters. Relationship between CO_2-limiting stress and photorespiration or high-light stress will be discussed as well as CO_2-signal transduction pathways deduced from array analyses of regulatory mutants.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] H.Fukuzawa et al.: "Ccm1, a regulatory gene controlling the induction of a carbon concentrating mechanism in Chlamydomonas reinhardtii, by sensing CO2 availability"Proc.Natl.Acad.Sci.USA. 98. 5347-5352 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.G.Mamedov et al.: "Characteristics and sequence of phosphoglycerate phospatase from an eukaryotic green algae Chlamydomonas reinhardtii"J.Biol.Chem.. 276. 45573-45579 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K.Miura et al.: "Regulation of a carbon concentrating mechanism through CCM1 in Chlamydomonas reinhardtii"Functional Plant Biol.. 29. 211-219 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Kasahara et al.: "Photochemical Properties of the Flavin Mononucleotide-Binding Domains of the Phototropins from Arabidopsis, Rice, and Chlamydomonas reinhardtii"Plant Physiol.. 129. 762-773 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Fukuzawa et al.: "Morecular control of carbon concentrating mechanism in Chlamydomonas reinhardtii : CCM1(CIA5), a regulatory factor and CO_2-responsive, genes."PS2001 Proceedings. 1. S19-002 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H.Fukuzawa et al.: "Isolation and characterization of regulatory mutants defective in CO_2-signal transduction in Chlamydomonas reinhardtii"PS2001 Proceedings. 1. S19-014 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 福澤秀哉, 九町健一, 三浦謙治: "「植物のゲノム研究プロトコール」植物細胞工学"秀潤社. 245 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hideya Fukuzawa, Kenji Miura, Kimitsune Ishizaki, Ken-ichi Kucho, Tatsuaki Saito, Tsutomu Kohinata, and Kanji Ohyama: "Ccml, a regulatory gene controlling the induction of a carbon concentrating mechanism in Chlamydomonas reinhardtii, by sensing CO_2 availability"Proc. Natl. Acad. Sci. USA. 98. 5347-5352 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tarlan G. Mamedov, Kensaku Suzuki, Kenji Miura, Ken-ichi Kucho, Hideya Fukuzawa: "Characteristics and sequence of phosphoglycerate phospatase from a eukaryotic green algae Chlamydomonas reinhardtii"J. Biol. Chem.. 276. 45573-45579 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kenji Miura, Tsutomu Kohinata, Satoshi Yoshioka, Knaji Ohyama, Hideya Fukuzawa: "Regulation of a carbon concentrating mechanism through CCM1 in Chlamydomonas reinhardtii"Functional Plant Biol.. 29. 211-219 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masahiro Kasahara, Trevor E. Swartz, Margaret A. Olney, Akihiko Onodera, Nobuyoshi Mochizuki, Hideya Fukuzawa, Erika Asamizu, Satoshi Tabata, Hiromi Kanegae, Makoto Takano, John M. Christie, Akira Nagatani, and Winslow R. Briggs: "Photochemical Properties of the Flavin Mononucleotide-Binding Domains of the Phototropins from Arabidopsis, Rice, and Chlamydomonas reinhardtii"Plant Physiol.. 129. 762-773 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hideya Fukuzawa, Kenji Miura, Tsutomu Kohinata, Satoshi Yoshioka, Kanji Ohyama: "Molecular control of carbon concentrating mechanism in Chlamydomonas reinhardtii : CCM1 (CIA5), a regulatory factor and CO_2-responsive genes"PS2001 Proceedings ISBN : 0643-06744-6. S19-02 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hideya Fukuzawa, Kenji Miura, Tsutomu Kohinata, Satoshi Yoshioka, Fumiya Taniguchi, Takeshi Inoue, Tastuaki Saito, Ken-ichi Kucho, Kanji Ohyama: "Isolation and characterization of regulatory mutants defective in CO_2-signal transduction in Chlamydomonas reinhardtii"PS2001 Proceedings ISBN : 0643-06744-6. S19-014 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takahashi Y, Miura K, Fukuzawa H, Morita H, Hayashi H, Kitayama M: "Promotoer analysis of a nuclear gene encoding chloroplastic phosphoglyceragte kinase in Chlamydomonas reinhardtii"PS2001 Proceedings ISBN : 0643-06744-6. S15-016 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Mamedov TG 他: "Characteristics and sequence of phosphoglycerate phospatase from an eukaryotic green algae Chlamydomonas reinhardtii"J.Biol. Chem.. 276. 45573-45579 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Miura K 他: "Regulation of a carbon concentrating mechanism through CCM1 in Chlamydomonas reinhardtii"Functional Plant Biol.. 29. 1-9 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Fukuzawa H 他: "Ccm1, a regulatory gene controlling the induction of a carbon concentrating mechanism in Chlamydomonas reinhardtii, by sensing CO_2 availability"Proc. Natl. Acad. Sci. USA.. 98. 5347-5352 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Asamizu et al.: "Generation of expressed sequence tags from low-CO_2 and high-CO_2 adapted cells of Chlamydimonas reinhardtii."DNA Res.. 7. 305-307 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Fukuzawa et al.: "Ccm1, a regulatory gene controlling the induction of a carbon concentrating mechanism in Chlamydomonas reinhardtii, by sensing CO_2 availability"Proc.Natl.Acad.Sci.USA.. (印刷中). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Fukuzawa et al.: "Algal carbonic anhydrases.In The carbonic anhysease : New Horizons."Birkhauser Publisher. 11 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 高橋裕一郎: "モデル生物として注目される緑藻クラミドモナス,蛋白質核酸酵素"共立出版. 9 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 福澤秀哉: "緑藻クラミドモナスにおけるゲノム情報の利用と遺伝子の同定"秀潤社. 10 (2001)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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