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The study of the heme degradation mechanism by heme oxygenase based on ESR and NMR spectroscopied and crystal structures

Research Project

Project/Area Number 12670125
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field General medical chemistry
Research InstitutionKURUME UNIVERSITY

Principal Investigator

NOGUCHI Masato  Kurume University School of Medicine, Dept. Med. Biochem., Professor, 医学部, 教授 (10124611)

Co-Investigator(Kenkyū-buntansha) SAKAMOTO Hiroshi  Kurume University School of Medicine, Dept. Med. Biochem., Assistant Professor, 医学部, 講師 (70309748)
Project Period (FY) 2000 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2002: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2001: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2000: ¥1,200,000 (Direct Cost: ¥1,200,000)
KeywordsHeme oxygenase / Heme degradation / α-hydroxyheme / Verdoheme / biliverdin / crystallography / Structural biology / ビリベルジン / α-ベルドヘム / ヘム-ヘムオキシゲナーゼ複合体 / 結晶構造
Research Abstract

Rudi Schimd and his coworkers in the middle of 1960s discovered heme oxygenase, an enzyme that is in charge of the physiological degradation of heme. Since then, a number of researchers in the whole world have extensively devoted their efforts in the study of this enzyme. In this project, we have pursued the mechanism of the heme oxygenase reaction from the viewpoint of structural biology and obtained the following outcome. (1) We succeeded in establishing an expression system of a truncated soluble version of heme oxygenase-1, in which the C-terminal membrane-binding stretch consisting of 22 hydrophobic amino acid residues are removed. With this system we are able to routinely obtain ca. 170 mg of purified enzyme from 10-L culture (Kurume med. J. 43, 313, 1996). (2) With a home-made titration device for dioxygen and electron, we found that α -hydroxyheme can be converted to verdoheme by dioxygen in the absence of added reducing equivalents (J. Biol. Chem. 274, 18196, 1999). (3) We obtained a diffraction data with high-resolution (2.4 ^^゜__A) of heme oxygenase-1(Acta. Cryst. D54, 1017, 1998). Then, with selenomethionine mutants of heme oxygenase-1, we determined the crystal structure of rat heme oxygenase-1 (FEBS Lett. 471, 61, 2000). (4) We succeeded in preparing four verdoheme isomaers (J. Inorg. Biochem. 82, 113, 2000). (5) We reconfirmed that α -hydroxyheme can be converted to verdoheme only by dioxygen without exogenous electrons. Further we clarified the discrepancies between researchers concerning the requirement for electron are due to the preparation methods of the complex of heme oxygenase with α -hydroxyheme and also due to the reducing systems employed (Eur. J. Biochem. 269, 5231-5239, 2002). (6) We determined the crystal structures of the apo form of heme oxygenase-1 (Biochemistry 41, 7293-7300, 2002) and the azide-bound form of heme-heme oxygenase complex (J. Biol. Chem. 277, 45086-45090, 2002 )

Report

(4 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] Manabu Satani: "Expression and characterization of human bifunctional peptidylglycine α-amidating monooxygenase"Protein expression and Purification. 28. 293-302 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Kenichi Takahashi: "Expression and characterization of frog peptidylglycine α-hydroxylating monooxygenase"Protein Expression and Purification. 27. 35-41 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masakazu Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide : implication for regiospecific hydroxylation of heme at the α-meso carbon"Journal of Biological Chemistry. 277・47. 45086-45090 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Hiroshi Sakamoto: "The reactivity of α-hydroxyhaem and verdohaem bound to haem oxygenase-1 to dioxygen and sodium dithionite"European Journal of Biochemistry. 269. 5231-5239 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masakazu Sugishima: "Crystal structure of rat apo-heme oxygenase (HO-1) : Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms"Biochemistry. 41・23. 7293-7300 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Kenichi Takahashi: "The reaction mechanism of peptidylglycine α-hydroxylating monooxygenase"International Congress Series. 1233C. 69-74 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Manabu satani: "Expression and characterization of human bifunctional peptidylglycine α-amidating monooxygenase"Protein expression and purification. 28. 293-302 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Kenichi Takahashi: "Expression and characterization of frog peptidylglycine α-hydroxylating monooxygenase"Protein expression and purification. 27. 35-41 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masakazu Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide : implication for regiospecific hydroxylation of heme at the α-meso carbon"Journal of Biological Chemistry. 277(47). 45086-45090 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Hiroshi Sakamoto: "The reactivity of α-hydroxyhaem and verdohaem bound to haem oxygenase-1 to dioxygen and sodium dithionite"European Journal of Biochemistry. 269. 5231-5239 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masakazu Sugishima: "Crystal structure of rat apo-heme oxygenase(HO-1) : Mechanism of heme oxygenase(HO-1) : Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms"Biochemistry. 41(23). 7293-7300 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Kenichi Takahashi: "The reaction mechanism of peptidylglycine α-hydroxylating monooxygenase"International Congress Series. 1233C. 69-74 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Manabu Satani: "Expression and characterization of human bifunctional peptidylglycine α-amidating monooxygenase"Protein expression and Purification. (In Press).

    • Related Report
      2002 Annual Research Report
  • [Publications] Kenichi Takahashi: "Expression and characterization of frog peptidylglycine α-hydroxylating monooxygenase"Protein Expression and Purification. 27. 35-41 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide : implication for regiospecific hydroxylation of heme at the α-meso carbon"Journal of Biological Chemistry. 277・47. 45086-45090 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hiroshi Sakamoto: "The reactivity of α-hydroxyhaem and verdohaem bound to haem oxygenase-1 to dioxygen and sodium dithionite"European Journal of Biochemistry. 269. 5231-5239 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal structure of rat apo-heme oxygenase (HO-1) : Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms"Biochemistry. 41・23. 7293-7300 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kenichi Takahashi: "The reaction mechanism of peptidylglycine α-hydroxylating monooxygenase"International Congress Series. 1233C. 69-74 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 平賀 紘一: "医学のための基礎分子細胞生物学"南山堂(印刷中).

    • Related Report
      2002 Annual Research Report
  • [Publications] Makoto Nakai: "Binding characteristics of dialkyl phthalates for the estrogen receptor"Biochemical and Biophysical Research Communications. 254. 311-314 (1999)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hiroshi Sakamoto: "Ferric α-hydroxyheme bound to heme oxygenase can be converted to verdoheme by dioxygen in the absence of added reducing equivalents"Journal of Biological Chemistry. 274. 18196-18200 (1999)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hitoshi Ehara: "Bis[2-(2-pyridyl)phenyl] diselenide, a more effective catalyst for oxidation of alcohols to carbonyl compounds"Journal of the Chemical Society. Perkin Trans.1. 9. 1429-1431 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with heme"FEBS Letters. 471. 61-66 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hiroshi Sakamoto: "Separation and identification of the regioisomers of verdoheme by reverdes-phase ion-pair high-performance liquid chromatography, and characterization of their complexes with heme oxygenase"Journal of Inorganic Biochemistry. 82. 113-121 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kazuho Hirata: "Heme oxygenase1 (HSP-32) is induced in myelin-phagocytosing Schwann cells of injured sciatic nerves in the rat"European Journal of Neuroscience. 12. 4147-4152 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] 野口 正人: "医科生化学 (竹重ら編)"(株)講談社サイエンティフィク. 334 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Makoto Nakai: "Binding characteristics of dialkyl phthalatcs for the estrogen receptor."Biochemical and Biophysical Research Communications.. 254. 311-314 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hiroshi Sakamoto: "Ferric α-hydroxyheme bound to heme oxygenase can be converted to verdoheme by dioxygen in the absence of added reducing equivalents."Journal of Biological Chemistry. 274. 18196-18200 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] H Ebita: "Bis[2-(2-pyridyl)phenyl] diselenide, a more effectibe catalyst for oxidation of alcohols to carbonyl compounds."Journal of the Chemical Society.Perkin Trans.I. 1429-1438 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] M Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with heme."FEBS Letters. 471. 61-66 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hirosi Sakamoto: "Separarion and identification of the regioisomers of verdoheme by reverdes-phase ion-pair high-performance liquid chromatography, and characterization of their complexes with heme oxygenaze."Jouenal of Inorganic Biochemistry. 82. 113-121 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] K Hirata: "Heme oxygenase 1(HSP-32) is induces in myelin -phagocytosing Schwann cellsof injured sciatic nerves in the rat."European Journal Neuroscience. 12. 4147-4152 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 野口正人: "医科生化学(竹重ら編)"(株)講談社サイエンティフィク. 334 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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