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The Analysis of Differentially Expressed Gene by DNA Micro Array

Research Project

Project/Area Number 12671724
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Ophthalmology
Research InstitutionJuntendo University, School of Medicine

Principal Investigator

IWATA Fumino  Juntendo University Ophthalmology, instructor, 医学部, 助手 (60212586)

Co-Investigator(Kenkyū-buntansha) SAKUMA Hitoshi  Juntendo University Ophthalmology, Assistant Professor, 医学部, 講師 (60235207)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2001: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2000: ¥2,800,000 (Direct Cost: ¥2,800,000)
KeywordsMacular degeneration / DNA array / Differential Gene Expression / ELOVL4 / Cynomolgus / immunohistochemistry / AMD / ELO / cDNA / Subtraction
Research Abstract

We have conducted histology, molecular biology, and genetic analysis of macular degeneration cynomolgus monkey with drusen. This monkey family previously discovered in National Primate Center in Tsukuba has been briefly characterized by observation of the retina and fluorescence imaging of the retina section. Sixty monkeys aged 15 to 24 years in propagation colonies were examined by fundus scope. Macular degeneration was observed in ten monkeys. Histological sections prepared from excised macular retina were stained by HE (hematoxylin and eosin), PAS (Periodic Acid Sciff), LFB (luxol fast blue) and MT (masson trichrome) and observed under light microscopy. Ultrastructure of drusen was examined by transmission electron microscopy. Hyper-pigmentation, partial vacuolation, increased autofluorescence, and PAS-positive granules in cell cytosol were observed in retinal pigment epithelium (RPE) of these affected monkey retina. However, minimum histological abnormality was observed in neural r … More etina and choroid. These observations indicate that lipofuscin granules are highly accumulated in RPE.. Molecular biology analysis using Clontech Inc, plastic DNA array with 8,000 genes were performed by labeling RNA extracted from affected and non-affected monkey retina by Cy3 and Cy5 respectively. After the normalization of all 8,000 genes, two samples were compared for differentially expressed gene. Fourteen genes were up-regulated by, 2.5 to 7.6-fold, while, five genes were down-regulated by 2.4 to 3.8-fold. Among the up-regulated genes, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2 gave more than 7.6-fold compare to normal. Lymphatic vessel endothelial hyaluronan receptor gave significant drop of 3.8-fold. Linkage analysis and candidate gene approach was performed in parallel to determine the gene responsible for the disease. The monkey homologue of the ELOVL4, gene responsible for autosomal dominant Stargardt-like macular dystrophy (STGD3) was cloned to determine any possible mutation in macular degeneration monkey. PCR of genomic DNA and 5'/3'-rapid amplification of cDNA ends were carried out to determine the complete sequence of the monkey ELOVL4 cDNA and the gene. ELOVL4 RNA was abundantly expressed in retina and thymus determined by real time quantitative PCR. Immunohistochemical analysis was performed using anti-human ELOVL4 peptide polyclonal antibody to localize ELOVL4 protein in monkey retina. No mutation was found in this gene. Less

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (16 results)

All Other

All Publications (16 results)

  • [Publications] Gahl WA, Kuehl EM, Iwata F, Lindblad A, Kaiser-Kupfer MI: "Corneal crystals in nephropathic cystinosis natural history and treatment. with cysteamine eyedrops"Mol Genet Metab. 71. 100-120 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Jiao X, Munier FL, Iwata F, Hayakawa M, Kanai A, Lee J, Schorderet DF, Chen MS, Kaiser-Kupfer M, Hejtmancik JF: "Genetic linkage of Bietti crystallin corneoretinal dystrophy to chromosome 4q35"Am J Hum Genet. 67. 1309-1313 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Iwata F, Reed GF, Caruso RC, Kuehl EM, Gall WA, Kaiser-Kuufer MI: "Correlation of visual acuity and ocular pigmentation with the 16-bp duplication in the HPS-1 gene of Hermansky-Pudlak syndrome, a form of albinism"Ophthalmology. 107. 783-789 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Anikster Y, Lucero C, Guo J, Huizing M, Shotelersuk V, Bernardini I, McDowell G, Iwata F, Kaiser-Kupfer MI, Jaffe R, Thoene J, Schneider JA, Gahl WA: "Ocular nonnephropathic cystinosis : clinical, biochemical, and molecular correlations"Pediatr Res. 47. 17-23 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 岩田文乃, 早川むつ子: "新図説臨床眼科講座第2巻 幼少児の眼 監修:田野保雄。「網脈絡変性疾患(2):脳回転状網脈絡膜萎縮症」"メジカルビュー社(東京). (179)1 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 岩田文乃: "難病と在宅ケア「治療に役立つ遺伝子研究」"日本プラニングセンター発行(千葉県松戸市). (7-10)4 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Gahl WA, Kuehl EM, Iwata F, Landblad A, Kaiser-Kupfer Ml.: "Corneal crystals in nephropathic cystinosis : natural history and treatment with cysteamine eyedrops."Mol. Genet. Metab. 71. 100-20 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Jiao X, Munier FL, Iwata F, Hayakawa M, Kanai A, Lee J, Schorderet DF, Chen MS, Kaiser-Kupfer M, Hejtmancik JF: "Genetic linkage of Bietti crystallin corneoretinal dystrophy to chromosome 4q35."Am. J. Hum. Genet. 67. 1309-13 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Iwata F, Reed GF, Caruso RC, Kuehl EM, Gahl WA, Kaiser-Kupfer Ml: "Correlation of visual acuity and ocular pigmentation with the 16-bp duplication in the HPS-1 gene of Hermansky-Pudlak syndrome, a form of albinism."Ophthalmology. 107. 783-9 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Anikster Y, Lucero C, Guo J, Huizing M, Shotelersuk V, Bernardini I, McDowell G, Iwata F, Kaiser-Kupfer MI, Jaffe R, Thoene J, Schneider JA, Gahl WA.: "Ocular nonnephropathic cystinosis : clinical, biochemical, and molecular correlations."Pediatr Res. 47. 17-23 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Gahl WA, Kuehl EM, Iwata F, Lindblad A, Kaiser-Kupfer MI.: "Corneal crystals in nephropathic cystinosis : natural history and treatment with cysteamine eyedrops"Mol Genet Metab.. 71. 100-120 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Jiao X, Munier FL, Iwata F, Hayakawa M, Kanai A, Lee J, Schorderet DF, Chen MS, Kaiser-Kupfer M, Hejtmancik JF.: "Genetic linkage of Bietti crystallin corneoretinal dystrophy to chromosome 4q35"Am J Hum Genet.. 67. 1309-1313 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Iwata F, Reed GF, Caruso RC, Kuehl EM, Gahl WA, Kaiser-Kupfer MI.: "Correlation of visual acuity and ocular pigmentation with the 16-bp duplication in the HPS-1 gene of Hermansky-Pudlak syndrome, a form of albinism"Ophthalmology. 107. 783-789 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Anikster Y, Lucero C, Guo J, Huizing M, Shotelersuk V, Bernardini I, McDowell G, Iwata F, Kaiser-Kupfer MI, Jaffe R, Thoene J, Schneider JA, Gahl WA.: "Ocular nonnephropathic cystinosis : clinical, biochemical, and molecular correlations"Pediatr Res.. 47. 17-23 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] 岩田文乃, 早川むつ子: "新図説臨床眼科講座第2巻 幼少児の眼 監修:田野保雄。「網脈絡変性疾患(2):脳回転状網脈絡膜萎縮症」"メジカルビュー社(東京). (179)1 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] 岩田文乃: "難病と在宅ケア「治療に役立つ遺伝子研究」"日本プラニングセンター発行(千葉県松戸市). (7-10)4 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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