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Study on Substrates-Recognition Mechanism of Thermoactinomyces vulgaris R-47 α-Amylase 2 (TVAII) based on X-ray Structures.

Research Project

Project/Area Number 12680606
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionTokyo University of Agriculture & Technology

Principal Investigator

KAMITORI Shigehiro  Tokyo University of Agriculture & Technology, Department of Biotechnology and Life Science, Associate Professor, 工学部, 助教授 (00262246)

Co-Investigator(Kenkyū-buntansha) SAKANO Yoshiyuki  Tokyo University of Agriculture & Technology, Department of Biological Science, professor, 農学部, 教授 (70014959)
Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2001: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2000: ¥1,600,000 (Direct Cost: ¥1,600,000)
KeywordsX-ray structure / α-amvlase / substrate-recognition / cyclodextrin / hydrolysis / glucoside linkage / mutant enzyme / Thermoactinomvces vulgaris
Research Abstract

Thermoactinomyces vulgaris R-47 produces two α-amylases TVAI (637 amino acid residues, MW=71,OOODa) and TVAII (585 amino acid residues, MW = 67,500Da), and they can hydrolyze not only starch but also cyclodextrins (CDs), which are scarcely hydrolyzed by other a-amylases. The X-ray structures of inactive mutant TVAIIs (Glu354->Ala or Asp325→Asn) complexed with β-CD (E354A/ β-CD) methyl-β-CD (D325N/methyl-β-CD) and maltohexose (D325N/G6), have been determined, showing that Phe286 is an important residue for TVAII to recognize CDs, and that the binding mode ofG6 as a substrate is very similar to that observed in the other a-amylase and a-amylase family enzymes. Kinetic analyzes of the mutant TVAIIs, F286A, F286L, F286Y and F286W (Phe286→Ala, Leu, Tyr, Trp) have also been done, supporting results from X-ray structures. The X-ray structure of TVAI has been determined at 1.6 Å, showing that there are some differences in the structures between TVAI and TVAII, related to the substrate specificity and thermostability of the enzyme.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] Kondo, S., Kaji, A., Yuguchi, K., Tonozuka, T., Sakano, Y., Kamitori, S.: "Crystallization and Preliminary X-ray Analysis of Thermoactinomyces vulgaris R-47 α-Amylase 1"Protein and Peptide letters. 7. 197-200 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kondo, S., Ohtaki, A., Tonozuka, T., Sakano, Y., Kamitori, S.: "Studies on the Hycirolyzing Mechanism for Cyclodextrins of Thermoactinomyces vulgaris R-47 α-Amylase 2 (TVAII). X-ray Structure of Mutant E354A Complexed with β-Cyclodextrin, and Kinetic Analyses on Cyclodextrins"J. Biochem.. 129. 423-428 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yokota, T., Tonozuka, T., Shimura, Y., Ichikawa, K., Kamitori, S., Sakano, Y.: "Structures of Thermoaclinomyces vulgaris R-47 α-Amylase II complexed with substrate analogues"Biosci. Biotecimol. Biochem.. 65. 619-626 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yokota, T., Tonozuka, T., Kamitori, S., Sakano, Y.: "The Deletion of Amino-Terminal Domain in Thermoactinomyces vulgaris R-47 α-Amylases : Effects of domain N on Activity, Specificity, Stability and Dimerization"Biosci. Biotecimol. Biochem.. 65. 401-408 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ohtaki, A., Kondo, S., Shimura, Y., Tonozuka, T., Sakano, T., Kamitori, S.: "Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoaclinomyces vulgaris R-47 a-amylase 2 (TVAII). X-ray structures of the mutant TVAiIs, F286A and F286Y. and kinetic analyses of the Phe286-replaced mutant TVAIIs"Carbohydrate Research. 334. 309-313 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kamitori, S., Abe, A., Ohtaki, A., Kaji, A., Tonozuka, T., Sakano, Y.: "Crystal Structures and Structural Comparison of Thermoactinomyces vulgaris R-47 α-Amylase 1 (TVAI) at 1.6 Å Resolution and α-Amylase 2 (TVAII) at 2.3 Å Resolution"J. Mol. Bid.. (印刷中). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kondo, S., Kaji, A., Yuguchi, K., Tonozuka, T., Sakano, Y., Kamitori, S.: "Crystallization and Preliminary X-ray Analysis of Thermoactinomyces vulgaris R-47 α-Amylase 1"Protein and Peptide letters. 7. 197-200 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yokota, T., Tonozuka, T., Kamitori, S., Sakaho, Y.: "The Deletion of Amino-Terminal Domain in Thermoactinomyces vulgaris R-47 α-Amylases : Effects of domain N on Activity, Specificity, Stability and Dimerization"Biosci. Biotechnol Biochem. 65. 401-408 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kondo, S., Ohtaki, A., Tonozuka, T., Sakano, Y., Kamitori, S.: "Kondo, S., Ohtaki, A., Tonozuka, T., Sakano, Y., Kamitori, S./Studies on the Hydrolyzing Mechanism for Cyclodextrins of Thermoactinomyces vulgaris R-47 α-Amylase 2 (TVAII). X-ray Structure of Mutant E354A Complexed with p-Cyclodextrin, and Kinetic Analyses on Cyclodextrins"J. Biochem.. 129. 423-428 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yokota, T., Tonozuka, T., Shimura, Y, Ichikawa, K., Kamitori, S., Sakano, Y.: "Structures of Thermoactinomyces vulgaris R-47 α-Amylase II complexed with substrate analogues"Biosci. Biotechnol Biochem.. 65. 619-626 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ohtaki, A., Kondo, S., Shimura, Y, Tonozuka, T, Sakano, Y., Kamitori, S.: "Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 α-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs"Carbohydrate Research. 334. 309-313 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kamitori, S., Abe, A., Ohtaki, A., Kaji, A., Tonozuka, T., Sakano, Y.: "Crystal Structures and Structural Comparison of Thermoactinomyces vulgaris R-47 α-Amylase 1 (TVAI) at 1.6 A Resolution and α-Amylase 2 (TVAII) at 2.3 A Resolution"J. Mol, Biol.. in press. (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kondo, S., Kaji, A., Yuguchi, K., Tonozuka, T., Sakano, Y., Kamitori, S.: "Crystallization and Preliminary X-ray Analysis of Thermoactinomyces vulgaris R-47 α-Amylase 1."Protein and Peptide letters. 7. 197-200 (2000)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kondo, S., Ohtaki, A., Tonozuka, T., Sakano, Y., Kamitori, S.: "Studies on the Hydrolyzing Mechanism for Cyclodextrins of Thermoactinomyces vulgaris R-47 α-Amylase 2(TVAII).X-ray Structure of Mutant E354A Complexed with β-Cyclodextrin, and Kinetic Analyses on Cyclodextrins."J. Biochem.. 129. 423-428 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yokota, T., Tonozuka, T., Shimura, Y., Ichikawa, K., Kamitori, S., Sakano, Y.: "Structures of Thermoactinomyces vulgaris R-47 α-Amylase II complexed with substrate analogues."Biosci. Biotechnol. Biochem.. 65. 619-626 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yokota, T., Tonozuka, T., Kamitori, S., Sakano, Y.: "The Deletion of Amino-Terminal Domain in Thermoactinomyces vulgaris R-47 α-Amylase: Effects of domain N on Activity, Specificity, Stability, and Dimerization."Biosci. Biotechnol. Biochem.. 65. 401-408 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ohtaki, A, Kondo, S., Shimura, Y., Tonozuka, T., Sakano, Y., Kamitori, S.: "Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 a-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs."Carbohydrate Research. 334. 309-313 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kamitori, S., Abe, A., Ohtaki, A., Kaji, A., Tonozuka, T., Sakano, Y.: "Crystal Structures and Structural Comparison of Thermoactinomyces vulgaris R-47 α-Amylase 1 (TVAI) at 1.6Å Resolution and α-Amylase 2 (TVAII) at 2.3Å Resolution"J. Mol. Biol.. (印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kondo,S.,Kaji,A.,Yuguchi,K.,Tonozuka,T.,Sakano,Y.,Kamitori,S.: "Crystallization and Preliminary X-ray Analysis of Thermoactinomyces vulgaris R-47 α-Amylase 1."Protein and Peptide letters. 7. 197-200 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kondo,S.,Ohtaki,A.,Tonozuka,T.,Sakano,Y.,Kamitori,S.: "Studies on the Hydrolyzing Mechanism for Cyclodextrins of Thermoactinomyces vulgaris R-47 α-Amylase 2 (TVAII). X-ray Structure of Mutant E354A Complexed with β-Cyclodextrin, and Kinetic Analyses on Cyclodextrins."J.Biochem.. 129. 423-428 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yokota,T.,Tonozuka,T.,Shimura,Y.,Ichikawa,K.,Kamitori,S.,Sakano,Y.: "Structures of Thermoactinomyces vulgaris R-47 α-Amylase II complexed with substrate analogues."Biosci. Biotechnol. Biochem.. 65. 619-626 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yokota,T.,Tonozuka,T.,Kamitori,S.,Sakano,Y.: "The Deletion of Amino-Terminal Domain in Thermoactinomyces vulgaris R-47 α-Amylases : Effects of domain N on Activity, Specificity, Stability and Dimerization."Biosci. Biotechnol. Biochem.. 65. 401-408 (2001)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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