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Characterization of ObgE Protein, the Escherichia.coli Homologue of Obg GTPas

Research Project

Project/Area Number 12680675
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

WADA Chieko  Virus Research, Cell Biology, Kyoto University, Associate Professor, ウイルス研究所, 助教授 (10175698)

Project Period (FY) 2000 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2001: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 2000: ¥1,800,000 (Direct Cost: ¥1,800,000)
KeywordsObg homologue / ObgE / E. coli / GTP binding protein / essential gene / chromosome partition / maturation of Ribosome / 大腸菌ObgホモローグObgE / GTP結合蛋白質 / 染色体分配阻害 / ObgEの精製法 / 膜結合 / DNA結合活性
Research Abstract

We found ObgE (previously known as YhbZ) in Escherichia coli, is homologue of Obg in B. subtillis. It carries conserved GTPase activity. We have shown that ObgE is essential for E. coli growth because ObgE is required for successful chromosome partition^1. How ObgE works is still unclear.
By proteome analysis of an obgE mutant using the RFHR 2-D PAGE method, we have found that the position of three spots of 30S ribosomal proteins, S6, S18 and S21 were changed on the sample grown under the non-permissive condition of the obgE mutant. In the wild type cell, S6 and S18 are modified post-translationally by RimK and RimI proteins with the addition of Glutamic acid residues to the C-terminals, and the acetylation of Alanine residue to the N-terminals, respectively. Under ObgE defective conditions, the spot of S6 protein shifted to the acidic side of the gel, which implies that more Glutamic acid residues were added to the C-terminals of the S6 protein than usual. Also a new spot of non-acetylated S18 protein appeared, which was confirmed by MALDI-TOFMS analysis, and the signal of the S21 spot was weakened. Furthermore, we found that the maturation of 16S RNA from pre-16S RNA was also inhibited under the ObgE defective conditions.
Since all three ribosomal proteins (S6, S18 and S21) are known to bind to the central region of 16S RNA, this data suggests that the assembly of the 30S ribosome is affected by obgE defective conditions.
1) Kobayashi, G., Moriya S., and Wada, C. (2001) Mol Microbiol., 41, 1037-1052.

Report

(3 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • Research Products

    (30 results)

All Other

All Publications (30 results)

  • [Publications] Komori, H., Matsunaga, F., Higuchi, Y., Ishiai, M., Wada, C., Miki, K.: "Crystal structure of a procaryotic replication initiator protein bound to DNA at 2.6Å resolution"EMBO Journal. 18-17. 4597-4607 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Komori, H., Sasai, N., Matsunaga, F., Wada, C., Miki, K.: "Crystalization and preliminary X-ray diffraction studies of a replication initiator protein (RepE54) of the mini-F plasmid complexed with iteron-DNA"J. Biochem.. 125. 24-26 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uga, H., Matsunaga, F., Wada, C.: "Regulation of DNA replication by iterons : an interaction between the ori2 and incC regions mediated by RepE-bound iterons inhibits DNA replication of mini-F in Escherichia coli"EMBO Journal. 18. 3856-3867 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uga, H., Komori, H., Miki, K., Wada, C.: "The iteron regions necessary for the RepE-iteron interaction in vivo in mini-F plasmid of Escherichia coli"J. Biochem.. 127. 537-541 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yoshimura, S., Ohniwa, R., Sato, M., Matsunaga, F., Kobayashi, G., Uga, H., Wada, C., Takeyasu, K.: "DNA phase transition promoted by replication initiator"Biochemistry. 31. 9139-9145 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Izutsu, K., Wada, C., Komine, Y., Sako, T., Ueguchi, C., Nakura, S., Wada, A.: "Escherichia coli ribosome-associated protein SRA, which increase during stationary phase"J. Bact.. 183. 2765-2773 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Izutsu, K., Wada, A., Wada, C.: "Expression of Ribosome Modulation Factor (RMF) in Escherichia coli requires ppGpp"Genes to cells. 6. 665-676 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kobayashi, G., Monya.S., Wada, C.: "Deficiency of essential GTP-binding protein ObgE in Eseherichia ccli inhibits chromosome partition"Mol. Microbiology. 41. 1037-1052 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 森浩禎, 堀内嵩, 磯野克巳, 和田千恵子, 金谷重彦, 北川正成, 荒武, 大島拓: "大腸菌のポストシーケンスゲノム解析(総説)"蛋白質・核酸・酵素. 46-13. 1977-1985 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 小森博文, 和田千恵子, 三木邦夫: "DNA複製開始たんぱく質RepEの構造と機能(総説)"生物物理. 41-5. 235-239 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 和田千恵子: "『分子シャペロンによる細胞機能制御』永田和宏・森正敬・吉田賢右著DNA複製開始と分子シャペロン(コラム)"28-29 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Komori, H., Matsunaga, F., Higuchi, Y., Ishiai, M., Wada, C. and Miki K.: "Crystal structure of a procaryotic replicatio initiator protein bound to DNA at 2.6A resolution"EMBO Journal. 18-17. 4597-4607 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Komori, H., Sasai, N., Matsunaga, F., Wada, C, and Miki. K.: "Crystalization and preliminary X-ray diffraction studies of a replication initiator protein (RepE54) of the mini-F plasmid complexed with iteron-DNA"J. Biochem.. 125. 24-26 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uga, H., Matsunaga, F. and Wada, C.: "Regulation of DNA replication by iterons : an interaction between the ori2 and incC regions mediated by RepE-bound iterons inhibits DNA replication of mini-F in Escherichia coli"EMBO Journal. 18. 3856-3867 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uga, H., Komori, H., Miki, K. and Wada, C.: "The iteron regions necessary for the RepE-iteron interaction in vivo in mini-F plasmid of Escherichia coli"J. Biochem.. 127. 537-541 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yoshimura, S. H., Ohniwa, R. L., Sato, M. H., Matsunaga, F., Kobayashi, G., Uga, H., Wada, C. and Takeyasu, K.: "DNA phase transition promoted by replication initiator"Biochemistry. 31. 9139-9145 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Izutsu, K., Wada. C., Komine, Y., Sako, T., Ueguchi, C., Nakura, S., and Wada, A.: "Escherichia coli ribosome-associated protein SRA, which increase during stationary phase"J. Bact.. 183. 2765-2773 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Izutsu, K., Wada, A. and Wada, C.: "Expression of Ribosome Modulation Factor (RMF) in Escherichia coli requires ppGpp"Genes to cells. 6. 665-676 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kobayashi, G., Moriya, S. and Wada, C.: "Deficiency of essential GTP-binding protein ObgE in Escherichia coli inhibits chromosome partition"Mol. Microbiology. 41. 1037-1052 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Mori, H., Horiuchi, T., Isono, K., Wada, C., Kanaya, S., Kitagawa, M., Ara, T. and Oshima, T.: "Analysis of post-sequencing genome in E. coli"Protein, Nucleic acid, Enzyme. 46-13 (Japanese). 1977-1985 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Komori, H., Wada, C. and Miki, K.: "Structure and function of DNA initiator protein RepE (Japanese)"Biophysics. 41-5. 235-239 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Wada, C.: "DNA replication initiation and molecular chaperones"Control mechanism of cellular function by molecularchaperones. (Japanese). 28-29 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Izutsu, K., Wada, A., Wada, C.: "Expression of Ribosome Modulation Factor(RMF)in Escherichia coli requires ppGpp"Genes to cells. 6. 665-676 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kobayashi, G., Moriya, S., Wada, C.: "Deficiency of essential GTP-binding protein ObgE in Escherichia coli inhibits chromosome partition"Mol. Microbiology. 41. 1037-1052 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 森浩禎, 堀内嵩, 磯野克巳, 和田千惠子, 金谷重彦, 北川正成, 荒武, 大島拓: "大腸菌のポストシーケンスゲノム解析(総説)"蛋白質・核酸・酵素. 46-13. 1977-1985 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 小森博文, 和田千惠子, 三木邦夫: "DNA複製開始たんぱく質RepEの構造と機能(総説)"生物物理. 41-5. 235-239 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 和田千惠子: "『分子シャペロンによる細胞機能制御』永田和宏・森正敬・吉田賢右著 DNA複製開始と分子シャペロン(コラム)"28-29 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Izutsu, K., Wada, C., Komine, Y., Sato, T., Ueguchi, C., Nakura, S., Wada, A.: "Escherichia coli ribosome-associated protein SRA, which increase during stationary phase"J. Bact.. 183. 2765-2773 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Uga,H.,Komori,H.,Miki,K.and Wada,C.: "The iteron regions necessary for the RepE-iteron interaction in vivo in mini-F plasmid of Escherichia coli."J.Biochem.. 127. 537-541 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yoshimura,S.H.,Ohniwa,R.L.,Sato,M.H.,Matsunaga,F.,Kobayashi,G.,Uga,H.,Wada,C.and Takeyasu,K.: "DNA phase transition promoted by replication initiator."Biochemistry. 31. 9139-9145 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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