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Structural study of membrane proteins (GPCR and channels) regulating signal transduction.

Research Project

Project/Area Number 13001003
Research Category

Grant-in-Aid for Specially Promoted Research

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

FUJIYOSHI Yoshinori  Kyoto University, Graduate School of Science, Professor, 大学院・理学研究科, 教授 (80142298)

Co-Investigator(Kenkyū-buntansha) SATO Chikara  National Institute of Advanced Industrial Science and Technology, Structure Physiology Group, Chief Scientist, 構造生理研究グループ, 主任研究員
DOI Tomoko  JEOL. Ltd., Basic Research department, Chief Scientist, 基礎研究部, 主任研究員
MIYAZAWA Atsuo  Kyoto University, RIKEN Harima Institute, Bio-multisome Research Team, Team Leader, 生体マルチソーム研究チーム, 連携研究員 (60247252)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥263,900,000 (Direct Cost: ¥203,000,000、Indirect Cost: ¥60,900,000)
Fiscal Year 2003: ¥63,700,000 (Direct Cost: ¥49,000,000、Indirect Cost: ¥14,700,000)
Fiscal Year 2002: ¥97,500,000 (Direct Cost: ¥75,000,000、Indirect Cost: ¥22,500,000)
Fiscal Year 2001: ¥102,700,000 (Direct Cost: ¥79,000,000、Indirect Cost: ¥23,700,000)
KeywordsElectron crystallography / Cryo-electron microscope / Single particle analysis / Two-dimensional crystal / Membrane proteins / Water channel / Acetylcholine receptor / Gating mechanism / アクアポリン-4 / ニコチン性アセチルコリン受容体 / IP_3受容体 / コネキシン / エンドセリン受容体 / Caveolin / アクアポリンー4 / 電圧感受性Na^+チャネル / 代謝型グルタミン酸受容体 / PSDZip45(Homer1)
Research Abstract

The following research results were achieved in three years by support of Glant-in Aid for Specially promoted Research from 2001. 1)Structure of water channel, AQP4, was analyzed by over expression technique of Sf9 cells as well as electron crystallography. Based on the structure we could elucidate mechanisms of orthogonal array formation and cell adhesion of the water channel molecules. 2)Structure and gating mechanism of the acetylcholine receptor pore were analyzed by cryo-electron microscopy (J.Mol.Biol., 319, 1165-1176 (2002), Nature, 423, 949-955 (2003)). 3)A new computer program for automatic particle pickup method of single particle analysis, by which structure of voltage-sensitive sodium channel was analyzed (Nature, 409, 1047-1051 (2001)), was developed (J.Struct.Biol., 136, 227-238 (2001)) and enabled us to analyze structure of IP_3 receptor (J.Mol.Biol., 336, 155-164 (2004)). 4)Structure of Homer was analyzed by X-ray crystallography (J.Mol.Biol., 318, 1117-1126 (2002)), and we developed a new Co-localization Expression Technique (Co-LET) for purification of membrane proteins without detergents (BBRC, 295, 756-765 (2002)). 5)We studied interaction of endothelin B receptor with caveoline-1 (Eur.J.Biochem., 270, 1816-1827 (2003)). Structure of rhodopsin was analyzed at 2.6 Å (Proc.Natl.Acad.Sci.USA, 99, 5982-5987 (2002)). The mutations of three residues in connexin26 were studied to obtain the structural insights of the molecule (J.Boil.Chem., 278, 1807-1816 (2003)). The importance of the second PDZ domain for clustering of PSD-95 was revealed (J.Biol.Chem., 277, 3640-3646 (2002)).

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (42 results)

All Other

All Publications (42 results)

  • [Publications] Fumiaki Imamura: "Ligand Binding of the Second PDZ Domain Regulated Clustering of PSD-95 with the Kvl.4 Potassium Channel."Journal of Biological Chemistry. 277. 3640-3646 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tetsuji Okada: "Functional role of internal water molecules in rhodopsin revealed by x-ray crystallography."Proceeding of the National Academy of the United States of America. 99. 5982-5987 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Katsumasa Irie: "Crystal Structure of the Homer 1 Family Conserved Region Reveals the Interaction Between the EVH1 Domain and Own Proline-rich Motif."Journal of Molecular Biology. 318. 1117-1126 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nigel Unwin: "Activation of the Nicotinic Acetylcholine Receptor Involves a Switch in Conformation of the α Subunits."Journal of Molecular Biology. 319. 1165-1176 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoko Hiroaki: "A new technique to co-localise membrane proteins with Homer/vesl."Biochemical and Biophysical Research Communications. 295. 756-765 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Atsunori Oshima: "Roles of Met-34, Cys-64, and Arg-75 in the Assembly of Human Connexin 26."Journal of Biological Chemistry. 278. 1807-1816 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tomohiro Yamaguchi: "Regulated interaction of endothelin B receptor with caveolin-1."European Journal of Biochemistry. 270. 1816-1827 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Atsuo Miyazawa: "Structure and gating mechanism of the acetylcholine receptor pore."Nature. 423. 949-955 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Chikara Sato: "Inositol 1,4,5-trisphosphate Receptor Contains Multiple Cavities and L-shaped Ligand-binding Domains."Journal of Molecular Biology. 336. 155-164 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nobuhiko Gyobu: "Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique."Journal of Structural Biology. 146. 325-333 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Henning Stahlberg: "Two-dimensional crystals : a powerful approach to assess structure, function and dynamics of membrane proteins."FEBS Letters. 504. 166-172 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Peter Agre: "Aquaporin water channels - from atomic structure to clinical medicine."Journal of physiology. 542. 3-16 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshinori Fujiyoshi: "Structure and Function of Water Channels."Current Opinion in Structural Biology. 12. 509-515 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshimasa Kyogoku: "Structural Genomics of Membrane Proteins."Accounts of Chemical Research. 36. 199-206 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fumiaki Imamura et al.: "Ligand Binding of the Second PDZ Domain Regulates Clustering of PSD-95 with the Kvl.4 Potassium Channel."Journal of Biological Chemistry. 277. 3640-3646 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tetsuji Okada et al.: "Functional role of internal water molecules in rhodopsin revealed by x-ray crystallography."Proceeding of the National Academy of the United States of America. 99. 5982-5987 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Katsumasa Irie at al.: "Crystal Structure of the Homer 1 Family Conserved Region Reveals the Interaction Between the EVH1 Domain and Own Proline-rich Motif."Journal of Molecular Biology. 318. 1117-1126 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nigel Unwin et al.: "Activation of the Nicotinic Acetylcholine Receptor Involves a Switch in Conformation of the α Subunits."Journal of Molecular Biology. 319. 1165-1176 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoko Hiroaki et al.: "A new technique to co-localise membrane proteins with Homer/vesl."Biochemical and Biophysical Research Communications. 295. 756-765 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Atsunori Oshima et al.: "Roles of Met-34, Cys-64, and Arg-75 in the Assembly of Human Connexin 26."Journal of Biological Chemistry. 278. 1807-1816 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tomohiro Yamaguchi et al.: "Regulated interaction of endothelin B receptor with caveolin-1."European Journal of Biochemistry. 270. 1816-1827 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Atsuo Miyazawa et al.: "Structure and gating mechanism of the acetylcholine receptor pore."Nature. 423. 949-955 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Chikara Sato et al.: "Inositol 1,4,5-trisphosphate Receptor Contains Multiple Cavities and L-shaped Ligand-binding Domains."Journal of Molecular Biology. 336. 155-164 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nobuhiko Gyobu et al.: "Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique."Journal of Structural Biology. 146. 325-333 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Henning Stahlberg et al.: "Two-dimensional crystals : a powerful approach to assess structure, function and dynamics of membrane proteins."FEBS Letters. 504. 166-172 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Peter Agre et al.: "Aquaporin water channels -from atomic structure to clinical medicine."Journal of Physiology. 542. 3-16 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshinori Fujiyoshi et al.: "Structure and Function of Water Channels."Current Opinion in Structural Biology. 12. 509-515 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshimasa Kyogoku et al.: "Structural Genomics of Membrane Proteins."Accounts of Chemical Research. 36. 199-206 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] T.Yamaguchi: "Regulated Interaction of Endothelin B Receptor with Caveolin-1."Eur.J.Biochem.. 270. 1816-1827 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] A.Miyazawa: "Structure and gating mechanism of the acetylcholine receptor pore."Nature. 423. 949-955 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] C.Sato: "Inositol 1,4,5-trisphosphate receptor contains multiple cavities and L-shaped ligand-binding domains."J.Mol.Biol.. 336. 155-164 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] N.Gyobu: "Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique."J.Struct.Biol.. (in press).

    • Related Report
      2003 Annual Research Report
  • [Publications] 入江 克雅: "Crystal structure of Homer 1 family conserved region reveals the interaction between EVH1 domain and own praline-rich motif"Journal of Molecular Biology. 318. 1117-1126 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 岡田 哲二: "Functional role of internal water molecules in rhodopsin revealed by x-ray crystallography"Proc. Natl. Acad. Sci. USA. 99. 5982-5987 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Nigel Unwin: "Activation of the Nicotinic acetylcholine receptor involves a switch in conformation of the subunits"Journal of Molecular Biology. 319. 1165-1176 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 廣明 洋子: "A new technique to co-localise membrane proteins with Homer/vesl"BBRC. 295. 756-765 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Peter Agre: "Aquaporin water channels-from atomic structure to clinical medicine"Journal of Physiology. 542.1. 3-16 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 藤吉 好則: "Structure and function of water channels"Current Opinion in Structural Biology. 12. 509-515 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 大嶋 篤典: "Roles of Met-34, Cys-64, and Arg-75 in the Assembly of Human Connexin 26"Journal of Biological Chemistry. 278. 1807-1816 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 山口 知宏: "Regulated Interaction of Endothelin B Receptor with Caveolin-1"European Journal of Biochemistry. (in the press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 今村 文昭: "Ligand Binding of the Second PDZ Domain Regulates Clustering of PSD-95 with the Kvl.4 Potassium Channel"Journal of Biological Chemistry. Vol.277 No.5. 3640-3646 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 入江 克雅: "Crystal structure of Homer 1 family conserved region reveals the interaction between EVH1 domain and own proline-rich motif"JOURNAL OF MOLECULAR BIOLOGY. (in the press).

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2018-03-28  

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