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A novel detection system based on amplification and a strongly correlated hydrogen network

Research Project

Project/Area Number 13031063
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionKyushu University

Principal Investigator

TAKENAKA Shigeori  School of Engineering, Department of Applied Chemistry, Associate Professor, 工学研究院応用化学部門, 助教授 (60188208)

Co-Investigator(Kenkyū-buntansha) NOJIMA Takahiko  School of Engineering, Department of Applied Chemistry, Research Associate, 工学研究院応用化学部門, 助手 (00291930)
中村 成夫  九州大学, 大学院・工学研究院, 助手 (00264078)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥12,900,000 (Direct Cost: ¥12,900,000)
Fiscal Year 2003: ¥4,700,000 (Direct Cost: ¥4,700,000)
Fiscal Year 2002: ¥4,600,000 (Direct Cost: ¥4,600,000)
Fiscal Year 2001: ¥3,600,000 (Direct Cost: ¥3,600,000)
KeywordsDNA / tetraplex / potassium ion / sensing / intercalator / tetrakis-acridiny peptide / telomerase / telomere DNA / テロメア / カリウム / FRET / TAMRA / FAM / ナトリウム / Oxytricha / 蛍光 / 水素結合 / センシング材料 / テロメアDNA配列 / Guanine quartet構造 / カリウムインジケーター / 蛍光共鳴エネルギー移動(FRET) / 強相関構造 / Potassium Sensing Oligonucleotide(PSO) / DNAワイヤ / フェロセン化ナフタレンジイミド / β-ジクロデキストリン / 分子スイッチ / ナノサイズ / 擬ポリフェロセンアレイ / 動的制御 / π-スタック
Research Abstract

DNA is regarded as a strongly correlated soft material from a viewpoint of polymer chemistry, as its structure is dictated by many cooperative interactions such as hydrogen bonding, pi-pi stacking of aromatic rings, and electrostatic forces. A new material may be developed successfully using these characteristics of DNA. Alternatively, DNA itself may be utilized aiming at developing a DNA synthesizing technology. So far, we stand in the latter position and have been studying materials containing biochemically useful reagents. Here, we discuss a new reagent by using DNA tetraplex formationwhich is one form of complex structures of DNA. 1)Potassium sensing oligonucleotide, PSO Several metal ions have an important role in living organism. Potassium ion is connected with regulation of other metal ions and some diseases and is attracted in the medical area. So far several reagents were studied in this point, but they have insufficient water-solubility and specificity. In this paper, we firstly succeeded the water-soluble sensing reagent for a potassium ion, which showed the very high specificity for potassium ion over sodium one. 2)Tetrakis-acridiny peptide (TAP) as a potential telomerase inhibitor Some of the cancers are believed to be derived from enhanced activity of telomerase, which catalyzes the extension of telomere DNA termini. Since telomerase cannot bind to a G-quartet structure, compounds which can stabilize such a DNA structure are good candidate for telomerase inhibitor. We tested inhibition ability of TAP, which interacts with DNA, for telomerase. TAP had remarkable stabilization power of a G-quartet structure and hence is promising as a novel telomerase inhibitor.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (27 results)

All Other

All Publications (27 results)

  • [Publications] S.Takenaka et al.: "Comparison of potassium ion preference of potassium sensing oligonucleotides PSO-1 and PSO-2, carrying human and Oxytricha telomeric sequence, respectively"Analytical and Bioanalytical Chemistry. 375. 1006-1010 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Bernard Juskowiak et al.: "Spectral properties and binding study of DNA complexes with a rigid bisintercalatorl, 4-bis((N-methylquinolinium-4-yl)vinyl)benzene"Spectrochimica Acta Part A. 59. 1083-1094 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Bernard Juskowiak et al.: "Detection of noncovalent interactions of hairpin oligonucleotide with stilbazoIium ligands by MAL DI TOF mass spectrometry"International Journal of Mass Spectrometry. 229. 225-230 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] K.Ijiro et al.: "Base-pair mapping by chemical force microscopy on nucleobase self-assembled monolayers"Colloids and Surfaces A : Physicochemical and Engineering Aspects. 198-200. 677-682 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] T.Nojima et al.: "Potassium sensing oligonucleotide. PSO, based on DNA tetraplex formation"Nucleic Acids Research Supplement. 2. 125-126 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Ueyama et al.: "Tetrakis-acridinyl peptide : a novel fluorometric reagent for nucleic acid analysis based on the fluorescence dequenching upon DNA binding"Analyst. 127. 886-888 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shigeori Takenaka: "Small Molecule DNA and RNA Binders : From Synthesis to Nucleic Acid Complexes"S, M. Demeunynck, C. Bailly, W.D.Wilson Eds., Wiley-VCH. 22 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] S.Takenaka: "Comparison of potassium ion preference of potassium sensing oligonucleotides, PSO-1 and PSO-2, carrying human and Oxytricha telomeric sequence, respectively"Analytical and Bioanalytical Chemistry. 375. 1006-1010 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Bernard Juskowiak: "Spectral properties and binding study of DNA complexes with a rigid bisintercalatorl, 4-bis ((N-methylquinolinium-4-yl) vinyl) benzene"Spectrochimica Acta Part A. 59. 1083-1094 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Bernard Juskowiak: "Detection of noncovalent interactions of hairpin oligonucleotide with stilbazolium ligands by MALDI TOF mass spectrometry"International Journal of Mass Spectrometry. 229. 225-230 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] K.Ijiro: "Base-pair mapping by chemical force microscopy on nucleobase self-assembled monolayers"Colloids and Surfaces A : Physicochemical and Engineering Aspects. 198-200. 677-682 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] T.Nojima: "Potassium sensing oligonucleotide, PSO, based on DNA tetraplex formation"Nucleic Acids Research Supplement. 2. 125-126 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Ueyama: "Tetrakis-acridinyl peptide : a novel fluorometric reagent for nucleic acid analysis based on the fluorescence dequenching upon DNA binding"Analyst. 127. 886-888 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] S.Takenaka: "Comparison of potassium ion preference of potassium sensing oligonucleotides PSO-1 and PSO-2, carrying human and Oxytricha telomeric sequence, respectively"Analytical and Bioanalytical Chemistry. 375. 1006-1010 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] B.Juskowiak: "Detection of noncovalent interactions of hairpin oligonucleotide with stilbazolium ligands by MALDI TOF mass spectrometry"International Journal of Mass Spectrometry. 229. 225-230 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 竹中 繁織: "ナノテクノロジーハンドブック(第1分冊)"丸善. 9 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Ueyama et al.: "A novel potassium sensing in aqueous media by synthetic oligonucleotide derivative. Fluorescence resonance energy transfer associated with guanine quartet-potassiumion complex formation"Journal of the American Chemical Society. Vol.124. 14286-14287 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Nojima et al.: "Potassium sensing oligonucleotide, PSO, based on DNA tetraplex formation"Nucleic Acids Research Supplement. Vol.2. 125-126 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] B.Juskowiak et al.: "Fluorescence energy transfer study of interstrand DNA crosslinking caused by rigid bisintercalator"Supramolecular Chemistry. Vol.14. 477-485 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 竹中繁織: "分析試料前処理ハンドブック"丸善. (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Sato et al.: "Linker chain effect of ferrocenyl naphathelene diimide on a double stranded DNA preference"Nucleic Acid Research Supplement. 1. 269-270 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Ueyama et al.: "DNA binding behavior of peptides carrying acridinyl units : First example of effective poly-intercalataion"Nucleic Acid Research Supplement. 1. 163-164 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Takenaka: "Highly sensitive probe for gene analysis by electrochemical approach"Bull. Chem. Soc. Jpn. 74・2. 217-224 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Yamashita et al.: "Analysis of the complex of oligonucleotide duplexes with ligands by MALDI-TOF Mass Spectroscopy"Chem. Lett. 680-681 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] B.Juskowiak et al.: "Energy transfer evidence for cross-linking of DNA by 1,4-bis((N-methylquinolinium-4-yl)vinvl)benzene"Polish J. Chem. 75. 1377-1378 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] B.Juskowiak et al.: "Isomerization of DNA-bound distilbazolium ligand induced by electron transfer from photoecited tris(1,1O-phenanthroline)-Ru(II),"Photochemistry and Photobiology. 74・3. 391-400 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 竹中繁織: "分析化学便覧h.DNAおよびRNA"丸善. 7 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2018-03-28  

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