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Highly Efficient Synthesis of Artificial Nucleic Acids Having New Functions

Research Project

Project/Area Number 13132203
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionThe University of Tokyo

Principal Investigator

WADA Takeshi  The University of Tokyo, Graduate School of Frontier Sciences, Associate Professor, 大学院新領域創成科学研究科, 助教授 (90240548)

Project Period (FY) 2001 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥37,000,000 (Direct Cost: ¥37,000,000)
Fiscal Year 2004: ¥8,300,000 (Direct Cost: ¥8,300,000)
Fiscal Year 2003: ¥8,700,000 (Direct Cost: ¥8,700,000)
Fiscal Year 2002: ¥10,200,000 (Direct Cost: ¥10,200,000)
Fiscal Year 2001: ¥9,800,000 (Direct Cost: ¥9,800,000)
KeywordsBoranophosphate DNA / Phosphorothioate DAN / Antisense DNA / Artificial nucleic acids / Stereocontrolled synthesis / Oligonucleotide synthesis / Solid-phase synthesis / Oligonucleotide therapeutics / ホスホロチオエートRNA / RNAi / 立体選択的合成 / オキサザホスホリジシ法 / ホスホロアミダイト法 / ホスホロシオエートDNA / オキサザホスホリジン法 / ジアステレオ選択的合成 / 無保護H-ホスホネート法 / N-アシル化DNA / 光クロスリンク核酸 / 2-アジドデオキシアデノシン / DNA / DNA相互作用 / RNA相互作用 / タンパク質相互作用
Research Abstract

New methods for the highly efficient synthesis of artificial nucleic acids, which are useful as drugs or functional materials, were developed. Boranophosphate DNAs are regarded as potentially useful antisense molecules or stable nucleic acid-based functional materials. We developed a new method for the synthesis of the boranophosphate DNAs on the basis of a new boranophosphorylation reaction (boranophosphotriester approach). We also developed a new reaction for the transformation of the boranophosphate DNAs into the corresponding H-phosphonate DNAs, which are useful intermediates for the synthesis of a wide variety of backbone-modified DNA analogs. Among these DNA analogs, phosphorothioate DNAs are most widely used for antisense drugs to date. However, the currently used phosphorothioate DNAs are random mixtures of diastereomers owing to the phosphorous chirality. We developed a new method for the stereocontrolled synthesis of phosphorothioate DNAs by the use of nucleoside 3'-oxazaphospholidine derivatives as monomers (oxazaphospholidine approach). The method was successfully applied to the stereocontrolled synthesis of phosphorothioate RNAs as well as other backbone-modified nucleic acid analogs.

Report

(5 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (44 results)

All 2005 2004 2003 2002 Other

All Journal Article (25 results) Patent(Industrial Property Rights) (2 results) Publications (17 results)

  • [Journal Article] Stereocontrolled synthesis of phosphorothioate DNA by the oxazaphospholidine approach.2005

    • Author(s)
      Wada, T.
    • Journal Title

      Front. Org. Chem. 1

      Pages: 41-61

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Stereocontrolled Synthesis of Phosphorothioate DNA by the Oxazaphospholidine Approach2005

    • Author(s)
      Wada, T.
    • Journal Title

      Front.Org.Chem. 1・1

      Pages: 41-61

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A Novel Method for the Synthesis of Dinucleoside Boranophosphates by a Boranophosohotriester Method2004

    • Author(s)
      Shimizu, M.et al.
    • Journal Title

      J.Org.Chem. 69

      Pages: 5261-5268

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A novel method for the synthesis of dinucleoside boranophosphates by a boranophosohotriester method2004

    • Author(s)
      Shimizu, M. et al.
    • Journal Title

      J. Org. Chem 69

      Pages: 5261-5268

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] BH3 as a protecting group for phosphonic acids : a novel method for the synthesis of dinucleoside H-phosphonates.2004

    • Author(s)
      Shimizu, M. et al.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 371-374

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Oligoribonucleotide synthesis by the use of 1-(2-cyanoethoxy)ethyl (CEE) as a 2'-hydroxy protecting group.2004

    • Author(s)
      Umemoto, T. et al.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 9529-9531

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A Novel Method for the Synthesis of Dinucleoside Boranophosphates by a Boranophosohotriester Method2004

    • Author(s)
      Shimizu, M., Wada, T., Oka, N., Saigo, K.
    • Journal Title

      J.Org.Chem. 69・16

      Pages: 5261-5268

    • Related Report
      2004 Annual Research Report
  • [Journal Article] BH_3 as a Protecting Group for Phosphonic Acids : A Novel Method for the Synthesis of Dinucleoside H-Phosphonates2004

    • Author(s)
      Shimizu, M., Tamura, K., Wada, T., Saigo, K.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 371-374

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Oligoribonucleotide Synthesis by the Use of 1-(2-Cyanoethoxy)ethyl (CEE) As a 2'-Hydroxy Protecting Group2004

    • Author(s)
      Umemoto, T., Wada, T.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 9529-9531

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Stereocontrolled Synthesis of Phosphorothioate RNA by the Oxazaphospholi-dine Approach2004

    • Author(s)
      Wada.T., Fujiwara, S., Sato, T., Oka, N., Saigo, K.
    • Journal Title

      Nucleic Acids Symp.Ser. 47

      Pages: 57-58

    • Related Report
      2004 Annual Research Report
  • [Journal Article] RNA Interference (RNAi) and Chemical Synthesis of RNA2004

    • Author(s)
      Wada, T.
    • Journal Title

      Bio Industry 21

      Pages: 17-24

    • Related Report
      2004 Annual Research Report
  • [Journal Article] An Oxazaphospholidine Approach for the Stereocontrolled Synthesis of Oligonucleoside Phosphnrothioates2003

    • Author(s)
      Oka, N.et al.
    • Journal Title

      J.Am.Chem.Soc. 125

      Pages: 8307-8317

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] BH_3 as a Protecting Group for Phosphonic Acids : A Novel Method for the Synthesis of Dinucleoside H-Phosphonates2003

    • Author(s)
      Shimizu, M.et al.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 371-374

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Solid-phase Synthesis of a Novel Polyester Analog of Nucleic Acid Bearing Serine Backbone2003

    • Author(s)
      Wada, T. et al.
    • Journal Title

      Peptide Science 40

      Pages: 159-150

    • NAID

      10012654047

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis of Chiral Oligopeptides which Recognize Double-stranded DNAs2003

    • Author(s)
      Wada, T. et al.
    • Journal Title

      Peptide Science 40

      Pages: 181-182

    • NAID

      10017676147

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] An Oxazaphospholidine Approach for the Stereocontrolled Synthesis of Oligonucleoside Phosphorothioates2003

    • Author(s)
      Oka, N
    • Journal Title

      J. Am. Chem. Soc. 125

      Pages: 8307-8317

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Diastereocontrolled Synthesis of Phosphorothioate DNA via an Oxaza- phospholidine Approach Using a Novel Class of Activators, Dialkyl(cya- nomethyl)ammonium salts2003

    • Author(s)
      Oka, N. etal.
    • Journal Title

      Nucleosides, Nucleotides, Nucleic Acids 22

      Pages: 1141-1143

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Reaction Mechanism for the Sterercontrolled Synthesis of Phosphorothio- ate DNA by the Oxazaphospholidine Approach2003

    • Author(s)
      Wada, T. et al.
    • Journal Title

      Nucleosides, Nucleotides, Nucleic Acids 222

      Pages: 1471-1473

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis of Dinucleoside Boranophosphates by a Boranophosphotriester Approach2003

    • Author(s)
      Wada, T., et al.
    • Journal Title

      Nucleosides, Nucleotides, Nucleic Acids 22

      Pages: 1431-1433

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Diastereocontrolled Synthesis of Dinucleoside Phosphorothioates Using a Novel Activators, Dialkyl(cyanomethyl) ammonium Tetrafluoroborates2002

    • Author(s)
      Oka, N.et al.
    • Journal Title

      J.Am.Chem.Soc. 124

      Pages: 4962-4963

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A New Boranophosphorylation Reaction for the Synthesis of Deoxyribonucleoside Boranophosphates2002

    • Author(s)
      Wada, T.et al.
    • Journal Title

      Tetrahedron Lett. 43

      Pages: 4137-4140

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Oligoribonucleotide Synthesis by the Use of 1-(2-Cyanoethoxy)ethyl (CEE) as a 2'-Hydroxy Protecting Group2002

    • Author(s)
      Umemoto, T. et al.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 9529-9531

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Diastereocontrolled Synthesis of Dinucleoside Phosphorothioates Using a Novel Activators, Dialkyl(cyanomethyl)ammonium Tetrafluoroborates2002

    • Author(s)
      Oka, N.et al.
    • Journal Title

      J. Am. Chem. Soc. 124

      Pages: 4962-4963

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A New Boranophosphorylation Reaction for the Synthesis of Deoxyribo- nucleoside Boranophosphates2002

    • Author(s)
      Wada, T. et al.
    • Journal Title

      Tetrahedron Lett. 43

      Pages: 4137-4140

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Taurine as a Constituent of Mitochondrial tRNAs : New Insight into the Functions of Taurine and Human Mitochondrial Diseases2002

    • Author(s)
      Suzuki, T. et al.
    • Journal Title

      EMBO J. 21

      Pages: 6581-6589

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 立体規則性の高いリボヌクレオチド類縁体の製造法2004

    • Inventor(s)
      和田 猛, 西郷 和彦, 岡 夏央
    • Industrial Property Rights Holder
      東京大学TLO
    • Industrial Property Number
      2004-089152
    • Filing Date
      2004-03-25
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] ホラノホスフェートモノマーおよびそれを用いたオリゴヌクレオチドの製造法2004

    • Inventor(s)
      和田 猛, 西郷 和彦, 清水 護
    • Industrial Property Rights Holder
      東京大学TLO
    • Industrial Property Number
      2004-061617
    • Filing Date
      2004-03-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Oka, N., Wada, T., Saigo, K.: "An Oxazaphospholidine Approach for the Stereocontrolled Synthesis of Oligonucleoside Phosphorothioates"J.Am.Chem.Soc.. 125. 8307-8317 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Oka, N., Wada, T., Saigo, K.: "Diastereocontrolled Synthesis of Phosphorothioate DNA via an Oxazaphospholidine Approach Using a Novel Class of Activators"Nucleosides, Nucleotides, Nucleic Acids. 22. 1411-1413 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Wada, T., Oka, N., Saigo, K.: "Reaction Mechanism for the Sterercontrolled Synthesis of Phosphoroth ioate DNA by the Oxazaphospholidine Approach"Nucleosides, Nucleotides, Nucleic Acids. 22. 1431-1433 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Wada, T., Oka, N., Saigo, K.: "Stereocontrolled Synthesis of Phosphorothioate DNA by an Oxazaphos pholidine Approach"Nucleic Acids Res.Suppl.. 3. 109-110 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Wada, T., Kato, Y., Saigo, K.: "Highly Chemo- and Regioselective Phosphitylation of 2'-Deoxyribonuc leosides"Nucleic Acids Res.Suppl.. 3. 65-66 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 和田猛, 関根光雄: "官能基選択的ホスホニル化反応を用いる新規核酸合成法の開発"有機合成化学協会誌. 61. 961-973 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 和田猛(共著): "ゲノムケミストリー"講談社. 240 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Oka, N., Wada, T., Saigo, K.: "Diastereocontrolled Synthesis of Dinucleoside Phosphorothioates Using a Novel Activators, Dialkyl(cyanomethyl)ammonium Tetrafluoroborates"J.Am.Chem.Soc.. 124・18. 4962-4963 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Wada, T., Shimizu, M., Oka, N., Saigo, K.: "A New Boranophosphorylation Reaction for the Synthesis of Deoxyribonucleoside Boranophosphates"Tetrahedron Letters. 43・23. 4137-4140 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Wada, T., Oka, N., Saigo, K: "Stereocontrolled synthesis of Phsphorothioate DNA by the Oxazaphospholidine Approach"Antisense. 69. 89-103 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Wada, T., Shimazaki, T., Nakagawa, S., Ohtsuki, T., Kurata, S., Watanabe, K., Saigo, K.: "Chemical Synthesisi of Novel Taurinecontaining Uridine Derivertives"Nucleic Acids Res., Suppl.. 2. 11-12 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Wada, T., Oka, N., Saigo, K: "Reaction Mechanism for the Stereoselective Internucleotidic Bond Formation by the Oxazaphospholidine Approach"Nucleic Acids Res., Suppl.. 2. 153-154 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Wada, T., Ohkubo, A., Mochizuki, A., Sekine, M.: "2-(Azidomethyl)benzoyl as a new protecting group in nucleosides"Tetrahedron Letters. 42・6. 1069-1072 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kadokura, M., Wada, T., Seio, K., Moriguchi, T., Huber, J., Luhrmann, R., Sekine, M.: "Solid-phase synthesis of a 5'-terminal TMG-capped trinucleotide block of U1 SnRNA"Tetrahedron Letters. 42・50. 8853-8856 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Wada, T., Mochizuki, A., Higashiya, S., Tsuruoka, H., Kawahara, S., Ishikawa, M., Sekine, M.: "Synthesis and properties of 2-azidodeoxyadenosine and its incorporation into oligodeox ynucleotides"Tetrahedron Letters. 42・52. 9215-9219 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Wada, T., Kobori, A., Kawahara, S., Sekine, M.: "Synthesis and hybridization ability of oligodeoxyribonucleotides incorporating N-acyldeox ycytidine derivatives"Eur. J. Org. Chem.. 4583-4593 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Wada, T., Tsuneyama, T., Saigo, K: "Synthesis of a new type of artificial nucleic acid derived from optically active serine"Nucleic Acids Res., Suppl.. 1. 187-188 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2018-03-28  

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