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Characterization of Oriented Thin Films of DNA

Research Project

Project/Area Number 13132205
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionTokyo Institute of Technology

Principal Investigator

OKAHATA Yoshio  Tokyo Institute of Technology, Frontier Collaborative Research center, Professor, フロンティア創造共同研究センター, 教授 (80038017)

Co-Investigator(Kenkyū-buntansha) MORI Toshiaki  Tokyo institute of Technology, Dept of Biomol Eng., Asso. Professor, 大学院・生命理工学研究科, 助教授 (50262308)
KAWASAKI Takayashi  Tokyo institute of Technology, Dept of Biomol Eng., Research Associate, 大学院・生命理工学研究科, 助手 (60334504)
FURUSAWA Hiroyuki  Tokyo institute of Technology, Dept of Biomol Eng., Research Associate, 大学院・生命理工学研究科, 助手 (60345395)
IJIRO Kuniharu  Hokkaido University, Electm Science Research Center, Asso. Professor, 電子化学研究所, 助教授 (90221762)
KINJO Masataka  Hokkaido University, Electm Science Research Center, Asso. Professor, 電子化学研究所, 助教授 (70177971)
Project Period (FY) 2001 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥49,600,000 (Direct Cost: ¥49,600,000)
Fiscal Year 2004: ¥10,900,000 (Direct Cost: ¥10,900,000)
Fiscal Year 2003: ¥11,500,000 (Direct Cost: ¥11,500,000)
Fiscal Year 2002: ¥15,300,000 (Direct Cost: ¥15,300,000)
Fiscal Year 2001: ¥11,900,000 (Direct Cost: ¥11,900,000)
KeywordsDNA / Electro conductivity / Orientation / Electro luminescent / One molecular observation / Fluorescence Correlation Snectrosco / 蛍光相関分光法 / DNAフィルム / 伝導小生 / 配向化DNA / DNA・脂質複合体 / LB膜 / DNAポリメラーゼ / 水晶発振子 / DNA固定化発振子 / 4穴式水晶発振子 / 酸素反応機構 / 脂質コンプレックス / 電気伝導度 / 異方性
Research Abstract

Deoxyribonucleic acids (DNAs) are important as a source of biological information depending on their base sequences. DNA is also interesting as a molecular material that shows a long rod-like duplex structure with base-pair stacking-the base separation is 3.4 Å while the diameter of the duplex is about 20 Å, therefore appears to be a good candidate for one-dimensional energy transfer and conduction along the p electron clouds of the stacked bases.
In this report, we summarize preparations of DNA-aligned Langmuir-Blodgett (LB) film and its anisotropic electron conductivity.
The DNA aligned film was prepared as follows. On the aqueous solution of DNA from Salmon testes and intercalator (ethidium bromide), Langmuir monolayer of cationic lipids were prepared, and DNA-lipid complexes were transferred on a substrate. It was confirmed by polarized absorption spectra that DNA strands aligned along a dipping direction.
The dc conductivity was measured by using an ammeter in atmosphere. When the DNA film was put on the comb-shaped electrode as DNA strands aligned perpendicularly to two Au electrodes, a large ohmic current was observed that increased linearly with increasing the applied voltage up to 0.1 V. On the contrary, when the film was put as DNA strands aligned parallelly to two electrodes, electric current was hardly observed even at the voltage of 0.1 v.

Report

(5 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (38 results)

All 2005 2004 2003 2002 2001 Other

All Journal Article (22 results) Book (2 results) Patent(Industrial Property Rights) (1 results) Publications (13 results)

  • [Journal Article] Fabrication of Silver Nanowires by Selective Electroless Plating of DNA Stretched Using the LB Method2005

    • Author(s)
      Y.Hashimoto et al.
    • Journal Title

      Chem.Lett

      Pages: 112-113

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Fabrication of Metal Nanowires by Electroless Plating of DNA2005

    • Author(s)
      K.Ijiro et al.
    • Journal Title

      e-J.Surf.Sci.Nanotech 3

      Pages: 82-85

    • NAID

      130004933867

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Stretching of single DNA molecules complexed with restriction endonuclease by Langmuir-Blodgett method2005

    • Author(s)
      Y.Matsu et al.
    • Journal Title

      Colloids and Surfaces B : Biointerfaces 40

      Pages: 123-126

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Fabrication of Silver Nanowires by Selective Electroless Plating of DNA Stretched Using the LB Method2005

    • Author(s)
      Y.Hashimoto et al.
    • Journal Title

      Chem. Lett. 34

      Pages: 112-113

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Fabrication of Metal Nanowires by Electroless Plating of DNA2005

    • Author(s)
      K.Ijiro et al.
    • Journal Title

      e-J. Surf Sci. Nanotech. 3

      Pages: 82-85

    • NAID

      130004933867

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Kinetic Studies of DNA Cleavage Reactions catalyzed by an ATP-dependent Deoxyribonuclease on a 27-MHz Quartz-Crystal Microbalance2004

    • Author(s)
      H.Matsuno et al.
    • Journal Title

      Biochemistry 43

      Pages: 12350-12358

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Kinetic Study of Phosphorylation-dependent Complex Formation between the Kinase-Inducible Domain (KID) of CREB and the KIX Domain of CBP on a Quartz Crystal Microbalance2004

    • Author(s)
      H.Matsuno et al.
    • Journal Title

      Chem. Eur. J 10

      Pages: 4510-4518

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Kinetic Studies of Amylopectin Cleavage Reactions Catalyzed by Phosphorylase b using a 27 MHz Quartz Crystal Microbalance2004

    • Author(s)
      H.Nishino et al.
    • Journal Title

      J. Am. Chem. Soc. 126

      Pages: 3588-3594

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] DNA-金属ハイブリッドからなるナノ細線の作製2004

    • Author(s)
      居城邦治
    • Journal Title

      Japan Nanonet Bulletin 49

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Real-time monitoring of in vitro transcriptional RNA using fluorescence correlation spectroscopy2004

    • Author(s)
      Nomura et al.
    • Journal Title

      ChemBioChem 5

      Pages: 1701-1703

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Specifically associated PCR products probed by coincident detection of two-color cross-correlated fluorescence intensities in human gene polymorphisms of methylene tetrahydrofolate reductase at site C677T : a novel measurement approach without follow-up mathematical analysis2004

    • Author(s)
      Z.Foldes-Papp et al.
    • Journal Title

      Experimental and Molecular Pathology 76(3)

      Pages: 212-218

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] DNA Measurements by Using Fluorescence Correlation Spectroscopy and Two-Color Fluorescence Crosscorrelation Spectroscopy2004

    • Author(s)
      T.Takagi et al.
    • Journal Title

      Current Pharmaceutical Biotechnology 5

      Pages: 199-204

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] DNAから作るバイオフィルムの機能化2004

    • Author(s)
      岡畑 恵雄, 川崎 剛美
    • Journal Title

      蛋白質・核酸・酵素 49,No.9

      Pages: 1328-1332

    • Related Report
      2004 Annual Research Report
  • [Journal Article] バイオテクノロジーとナノテクノロジーの融合2004

    • Author(s)
      岡畑 恵雄
    • Journal Title

      Ohm Bulletin 40,No.165

      Pages: 4-6

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Direct Monitoring of Enzymatic Glucan Hydrolyses on a 27-MHz Quartz-Crystal Microbalance2004

    • Author(s)
      H.Nishino, T.Nihira, T.Mori, Y.Okahata
    • Journal Title

      J.Am.Chem.Soc. 126

      Pages: 2264-2265

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Kinetic Studies of Amylopectin Cleavage Reactions Catalyzed by Phosphorylase b using a 27 MHz Quartz Crystal Microbalance2004

    • Author(s)
      H.Nishino, A.Murakawa, T.Mori, Y.Okahata
    • Journal Title

      J.Am.Chem.Soc. 126

      Pages: 14752-14757

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Interaction behavior and tensile strength of DNA-lipid films for the dental application2004

    • Author(s)
      T.Fukushima, T.Hayakawa, Y.Inoue, K.Miyazaki, Y.Okahata
    • Journal Title

      Biomaterials 25

      Pages: 5491-5497

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Antibacterial characteristics of newly developed amphiphilic lipids and DNA-lipid complexes against bacteria2003

    • Author(s)
      Y.Inoue et al.
    • Journal Title

      J.Biomed.Mater.Res. 65A

      Pages: 203-208

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] C677T Single Nucleotide Polymorphisms of the Human Methylene Tetrahydrofolate Reductase and Specific Identification A Novel Strategy Using Two-Color Cross-Correlation Fluorescence Spectroscopy2003

    • Author(s)
      Z.Foldes-Papp et al.
    • Journal Title

      Molecular Diagnosis 7(1)

      Pages: 99-111

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A RNA-aligned Film prepared from a RNA-Lipid Complex2002

    • Author(s)
      Y.Hoshino et al.
    • Journal Title

      Maromolecular rapid Commun 23

      Pages: 253-255

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Stripe Pattern Formation of Oligonucleotides by Langmuir-Blodgett Method

    • Author(s)
      Y.Matsuo et al.
    • Journal Title

      International Journal of Nanoscience (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Kinetic Studies and Effects of Ionic Strengths, on a Skn-BD Peptide Binding to DNA Strands immobilized on a 27 MHz Quartz-Crystal Microbalance

    • Author(s)
      H.Furusawa et al.
    • Journal Title

      ChemBioChem (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] 図解 バイオ活用技術のすベて2004

    • Author(s)
      岡畑 恵雄 ほか
    • Total Pages
      250
    • Publisher
      工業調査会
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] 図解 バイオ活用技術のすべて、DNA配向化フィルム(東工大生命理工編)2004

    • Author(s)
      岡畑 恵雄, 川崎 剛美
    • Publisher
      工業調査会
    • Related Report
      2004 Annual Research Report
  • [Patent(Industrial Property Rights)] DNA分子の伸長固定化法2001

    • Inventor(s)
      下村 政嗣, 居城邦治
    • Industrial Property Rights Holder
      下村 政嗣, 居城 邦治
    • Industrial Property Number
      2001-337318
    • Filing Date
      2001-11-02
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] T.Ozeki, H.Furusawa, Y.Okahata: "In vitro selection of four way junction DNA"Nucleic Acids Res.Suppl.. No.3. 257-258 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Furusawa, A.Murakawa, S.Fukusho, Y.Okahata: "In vitro Selection of N Peptide-Binding RNA on a Quartz-crystal Microbalance to Study a Sequence-Specific Interaction of Peptide and Loop RNA"ChemBioChem. 217-220 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Inoue, T.Fukushima, T.Hayakawa, H.Takeuchi, H.Kaminishi, K.Miyazaki, Y.Okahata: "Antibacterial characteristics of newly developed amphiphilic lipids and DNA-lipid complexes against bacteria"J.Biomed.Mater.Res.. 65A. 203-208 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 川崎 剛美, 岡畑 恵雄: "サケ精子のDNAから作るバイオフィルム"未来材料. 3. 46-51 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 岡畑 恵雄: "DNAフィルム"化学装置. 4月号. 60-62 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] S.Fukusho, H.Furusawa, Y.Okahata: "In vitro Selection and Evaluation of RNA Aptamers that recognize Arginine-rich motif Model Peptide on a Quartz-crystal Microbalance"Chem.Commun.. 88-89 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Mori, M.Li, A.Kobayashi, Y.Okahata: "Reversible Control of Enzymatic Transglycosylations in Supercritical Fluoroform using a Lipid-Coated β-D-Galactosidase"J.Am.Chem.Soc. 124. 1188-1189 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Hoshino, S.Tajima, H.Nakayama, Y.Okahata: "A RNA-aligned Film prepared from a RNA-Lipid Complex"Maromolecular rapid Commun.. 23. 253-255 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Furusawa, Y.Kitamura, N.Hagiwara, T.Turimoto, Y.Okahata: "Binding Kinetics of the Toroidal-Shaped PCNA to DNA Strands on a 27 MHz Quartz-Crystal Microbalance"ChemPhysChem.. No.5. 446-448 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Matsuno, Y.Okahata: "Direct Monitoring of DNA Cleavages catalyzed by an ATP-dependent Deoxyribonuclease on a 27 MHz Quartz-Crystal Microbalance"Chem.Commun. 470-471 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Nakayama, H.Ohno, Y.Okahata: "Intramolecular Electron Conduction along DNA Strands and their Temperature Dependency in a DNA-aligned Cast Film"Chem. Commun.. 2300-2301 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Hoshino, H.Nakayama, Y.Okahata: "Preparations of a RNA-lipid complex film and its physical properties"Nucleic Acids Res. Suppl.. 1. 61-62 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Fukushima, Y.Inoue, T.Hayakawa, K.Taniguchi, K.Miyazaki, Y.Okahata: "Preparation of and Tissue response to DNA-Lipid Films"J. Dental Res.. 80. 1772-1776 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2018-03-28  

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