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Mechanisms of Formation and Resolution of Holliday junction in Recombination and Replication

Research Project

Project/Area Number 13141203
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionOsaka University

Principal Investigator

SINAGAWA Hideo  Osaka-Uieliversity, Research Institute for Microbial Diseases, Professor, 微生物病研究所, 招へい教授 (40029799)

Co-Investigator(Kenkyū-buntansha) HISHIDA Takashi  Research Institute for Microbial Diseases, Associate Professor, 微生物病研究所, 助教授 (60335388)
MORISHITA Takashi  Research Institute for Microbial Diseases, Designated Reseacher, 微生物病研究所, 特任研究員 (50273701)
IWASAKI Hiroshi  Yokohama City University, Graduate School of Integrated Science, Associate Professor Research Institute for Microbial Diseases, 大学院国際総合科学研究科, 準教授 (60232659)
ISHINO Yoshizumi  Kyushu University, Faculty of Agriculture, Professor, 大学院農学研究院, 教授 (30346837)
MORIKAWA Kosuke  Dpt. of Structural Biol. Biomolecular Eng. Res. Inst., Director, 所長 (80012665)
筒井 康博  大阪大学, 国立遺伝学研究所, 助手 (00390625)
Project Period (FY) 2001 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥172,700,000 (Direct Cost: ¥172,700,000)
Fiscal Year 2005: ¥44,800,000 (Direct Cost: ¥44,800,000)
Fiscal Year 2004: ¥44,000,000 (Direct Cost: ¥44,000,000)
Fiscal Year 2003: ¥27,700,000 (Direct Cost: ¥27,700,000)
Fiscal Year 2002: ¥27,800,000 (Direct Cost: ¥27,800,000)
Fiscal Year 2001: ¥28,400,000 (Direct Cost: ¥28,400,000)
Keywordsgenetics / recombination / replication / cancer / radiation / 相同的DNA組換え / Holliday構造 / RuvABC / 出芽酵母 / DNA組換え / 分裂酵母 / MGS1遺伝子 / RAD6-RAD18
Research Abstract

In this project, we aimed at elucidating molecular mechanisms of Holliday junction resolutin by E. coli RuvA, RuvB, and RuvC proteins, and finding genes involved in resolution of recombination intermediates in eukaryotes. Our major achievements are as follows.
1. We elucidated three-dimensional structure of RuvA-RuvB protein complex by X-ray crystallography and electron microscopy, and proposed a model of Holliday junction DNA complexed with RuvAB proteins.
2. We identified 10 novel genes involved, in recombination repair in fission yeast and analyzed their functions.
3. We studied the mechanism of branch migration of Holliday junction by RuvAB complex by single-molecule imaging analysis and showed that branch migration is brought by rotation of DNA duplex at the junction.
4. One of the newly found gene, fbh-1, encodes a protein with DNA helicase and F-box motifs. Fbh-1 protein is involved in processing some form of recombination intermediate.
5. We studied the functions of rad60 and rad62 (nse4) genes and found that they are functionally and physically associate with Smc5/6 (Structural Maintenance of Chromosome) complex, and are involved in processing recombination intermediates. We elucidated role of the Rad60 and Smc5/6 complex in checkpoint regulation.
6. We discovered a new recombination repair pathway by the Rad51-Swi5-Sfrl protein complex in fission yeast.
7. We discovered a structure-specific DNA helicase/nuclease named Hef-1 in thermophilic archaea and elucidated the crystal structure. The importance of this enzyme in DNA repair is highlighted by the recent finding that it is an ortholog of one of the genes mutated in Fanconi Anemia, a hereditary disease having a defect in DNA repair.

Report

(6 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (91 results)

All 2006 2005 2004 2003 2002 2001 Other

All Journal Article (72 results) Patent(Industrial Property Rights) (1 results) Publications (18 results)

  • [Journal Article] Rhp51-dependent recombination intermediates that do not generate checkpoint signal are accumulated in Schizosaccharomyces pomberad60 and smc5/6 mutants after release from replication arrest.2006

    • Author(s)
      Miyabe I, et al.
    • Journal Title

      Mol Cell Biol. 26

      Pages: 343-53

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The archaeal Hjm helicase has recQ-like functions, and may be involved in repair of stalled replication fork.2006

    • Author(s)
      Fujikane, R., et al.
    • Journal Title

      Genes Cells. 11

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Mechanisms of maintaining genetic stability by homologous recombination.2006

    • Author(s)
      Ishino Y., et al.
    • Journal Title

      Chem. Rev. 106:

      Pages: 324-339

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Stoichiometric complex formation by proliferating cell nuclear antigen (PCNA) and its interacting protein : purification and crystallization of the DNA polymerase and PCNA monomer mutant complex from Pyrococcus furiosus.2006

    • Author(s)
      Nishida, H., et al.
    • Journal Title

      Acta Cryst. F62

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Rhp51-dependent recombination intermediates that do not generate checkpoint signal are accumulated in Schizosaccharomyces pombe rad60 and smc5/6 mutants after release from replication arrest.2006

    • Author(s)
      Miyabe I, et al.
    • Journal Title

      Mol Cell Biol. 26

      Pages: 343-53

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Mechanisms of maintaining genetic stability by homologous recombination.2006

    • Author(s)
      IshinoY., et al.
    • Journal Title

      Chem. Rev. 106

      Pages: 324-339

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Rhp51-dependent recombination intermediates that do not generate checkpoint signal are accumulated in Schizosaccharomyces pombe rad60 and smc5/6 mutants after release from replication arrest.2006

    • Author(s)
      Miyabe I, Morishita T, Hishida T, Yonei S, Shinagawa H.
    • Journal Title

      Mol Cell Biol. 26・1

      Pages: 343-353

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The archaeal Hjm helicase has recQ-like functions, and may be involved in repair of stalled replication fork.2006

    • Author(s)
      Fujikane R, Shinagawa H, Ishino Y.
    • Journal Title

      Genes Cells. 11・2

      Pages: 99-110

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Role of the RuvAB protein in avoiding spontaneous formation of deletion mutations in the Escherichia coli K-12 endogenous tonB gene.2005

    • Author(s)
      Mashimo K, et al.
    • Journal Title

      J Biol Chem. 280

      Pages: 30504-10

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Role of the Schizosaccharomyces pombe F-Box DNA helicase in processing recombination intermediates.2005

    • Author(s)
      Morishita T, et al.
    • Journal Title

      Mol Cell Biol. 25

      Pages: 8074-83

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Functional overlap between RecA and MgsA(RarA) in the rescue of stalled replication forks in Escherichia coli.2005

    • Author(s)
      Shibata T, et al.
    • Journal Title

      Genes Cells. 10

      Pages: 181-91

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Genetic and physical interacitions between Schizosaccharomyces pombe Mcll and Rad2, Dna2 and DNA polymerase alpha : evidence for a multifunctional role of Mcll in DNA replication and repair.2005

    • Author(s)
      Tsutsui Y, et al.
    • Journal Title

      Curr Genet. 48

      Pages: 34-43

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Composition and architecture of the Schizosaccharomyces pombe Rad18(Smc5-6) complex.2005

    • Author(s)
      Sergeant J, et al.
    • Journal Title

      Mol Cell Biol. 25

      Pages: 172-84

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure and functional implications of Pyrococcus furiosus Hef helicase domain involved in branched DNA processing.2005

    • Author(s)
      Nishino, T., et al.
    • Journal Title

      Structure 13

      Pages: 143-153

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification of a novel helicase activity unwinding branched DNAs from the hyperthermophilic archaeon, Pyrococcus furiosus.2005

    • Author(s)
      Fujikane, R., et al.]
    • Journal Title

      J. Biol. Chem. 280

      Pages: 12351-12358

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification of the critical region in Replication factor C from Pyrococcus furiosus for the stable complex formation with proliferating cell nuclear antigen and DNA.2005

    • Author(s)
      Nishida, H., et al.
    • Journal Title

      Gene Genet. Syst. 80

      Pages: 83-93

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis.2005

    • Author(s)
      Miyata, T., et al.
    • Journal Title

      Proc Natl Acad Sci U S A. 102

      Pages: 13795-13800

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Expression and molecular characterization of spherical particles derived from the genome of the hyperthermophilic euryarchaeote Pyrococcus furiosus.2005

    • Author(s)
      Namba, K., et al.
    • Journal Title

      J. Biochem. 138

      Pages: 193-199

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Structural and functional analyses of an archaeal XPF/Rad1/Mus81 nuclease : asymmetric DNA binding and cleavage mechanisms.2005

    • Author(s)
      Nishino, T. et al.
    • Journal Title

      Structure 13

      Pages: 1183-1192

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Overproduction, purification and crystallization of an archaeal DNA ligase from Pyrococcus furiosus.2005

    • Author(s)
      Nishida, H., et al.
    • Journal Title

      Acta Cryst. F61

      Pages: 1100-1102

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Role of the Schizosaccharomyces pombe F-Box DNA helicase in processing recombination intermediates.2005

    • Author(s)
      Morishita T, et al.
    • Journal Title

      MoL Cell Biol. 25

      Pages: 8074-83

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Functional overlap between RecA and MgsA (RarA) in the rescue of stalled replication forks in Escherichia coli.2005

    • Author(s)
      Shibata T, et al.
    • Journal Title

      Genes Cells. 10

      Pages: 181-91

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Genetic and physical interactions between Schizosaccharomyces pombe Mcll and Rad2, Dna2 and DNA polymerase alpha : evidence for a multifunctional role of Mcll in DNA replication and repair.2005

    • Author(s)
      Tsutsui Y, et al.
    • Journal Title

      Curr Genet. 48

      Pages: 34-43

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Composition and architecture of the Schizosaccharomyces pombe Rad18 (SmcS-6) complex.2005

    • Author(s)
      Sergeant J, et al.
    • Journal Title

      Mol Cell Biol. 25

      Pages: 172-84

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification of a novel helicase activity unwinding branched DNAs from the hyperthermophilic archaeon, Pyrococcus furiosus.2005

    • Author(s)
      Fujikane, R., et al.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 12351-12358

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification of the critical region in Replication factor C from Pyrococcus furiosus for the stable complex formation with proliferating cell nuclear antigen and DNA.2005

    • Author(s)
      Nishida, H., et al.
    • Journal Title

      Genes Genet. Syst. 80

      Pages: 83-93

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Structural and functional analyses of an archaeal XPF/Radl/Mus81 nuclease : asymmetric DNA binding and cleavage mechanisms.2005

    • Author(s)
      Nishino, T., et al.
    • Journal Title

      Structure 13

      Pages: 1183-1192

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification of a novel helicase activity unwinding branched DNAs from the hyperthermophilic archaeon, Pyrococcus furiosus.2005

    • Author(s)
      Fujikane R, Komori K, Shinagawa H, Ishino Y.
    • Journal Title

      J Biol Chem. 280・13

      Pages: 12351-12358

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Genetic and physical interactions between Schizosaccharomyces pombe Mcl1 and Rad2, Dna2 and DNA polymerase alpha: evidence for a multifunctional role of Mcl1 in DNA replication and repair.2005

    • Author(s)
      Tsutsui Y, Morishita T, Natsume T, Yamashita K, Iwasaki H, Yamao F, Shinagawa H.
    • Journal Title

      Curr Genet. 48・1

      Pages: 34-43

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Structure-function analysis of the three domains of RuvB DNA motor protein.2005

    • Author(s)
      Ohnishi T, Hishida T, Harada Y, Iwasaki H, Shinagawa H.
    • Journal Title

      J Biol Chem. 280・34

      Pages: 30504-30510

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Role of the Schizosaccharomyces pombe F-Box DNA helicase in processing recombination intermediates.2005

    • Author(s)
      Morisita T, Furukawa F, Sakaguchi C, Toda T, Carr AM, Iwasaki H, Shinagawa H.
    • Journal Title

      Mol Cell Biol. 25・18

      Pages: 8074-8083

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Functional overlap between RecA and MgsA (RarA) in the rescue of stalled replication forks in Escherichia coli.2005

    • Author(s)
      Shibata T, Hishida T, Kubota Y, Han YW, Iwasaki H, Shinagawa H.
    • Journal Title

      Genes Cells. 10

      Pages: 181-191

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Identification of a novel helicase activity unwinding branched DNAs from the hyperthermophilic archaeon, Pyrococcus furiosus.2005

    • Author(s)
      Fujikane R, Komori K, Shinagawa H, Ishino Y.
    • Journal Title

      J Biol Chem. (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Direct evidence that a conserved arginine in RuvB AAA^+ ATPase acts as an allosteric effector for the ATPase activity of the adjacent subunit in a hexamer.2004

    • Author(s)
      Hishida T, et al.
    • Journal Title

      Proc Natl Acad Sci U S A. 101

      Pages: 9573-7

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Rad62 protein functionally and physically associates with the smc5/smc6 protein complex and is required for chromosome integrity and recombination repair in fission yeast.2004

    • Author(s)
      Morikawa H, et al.
    • Journal Title

      Mol Cell Biol. 24

      Pages: 9401-13

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The clamp-loading complex for processive DNA replication.2004

    • Author(s)
      Miyata, T, et al.
    • Journal Title

      Nat. Struct. Mol. Biol. 7

      Pages: 11632-11636

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Cooperation of the N-terminal helicase and C-terminal endonuclease activities of archaeal Hef protein in processing stalled replication fork.2004

    • Author(s)
      Komori K, et al.
    • Journal Title

      J. Biol. Chem. 279

      Pages: 53175-53185

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Direct evidence that a conserved arginine in RuvB AAA+ ATPase acts as an allosteric effector for the ATPase activity of the adjacent subunit in a hexamer.2004

    • Author(s)
      Hishida T, et al.
    • Journal Title

      Proc Natl Acad Sci USA. 101

      Pages: 9573-7

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Rad62 protein functionally and physically associates with the smc5/smc6 protein complex and is required for chromosome integrity and recombination repair in fission yeast.2004

    • Author(s)
      Morikawa H, et al.
    • Journal Title

      Mol Cell Biol 24

      Pages: 9401-13

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Role of the Escherichia coli RecQ DNA helicase in SOS signaling and genome stabilization at stalled replication forks.2004

    • Author(s)
      Hishida T, Han YW, Shibata T, Kubota Y, Ishino Y, Iwasaki H, Shinagawa H.
    • Journal Title

      Genes Dev. 18

      Pages: 1886-1897

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Direct evidence that a conserved arginine in RuvB AAA+ ATPase acts as an allosteric effector for the ATPase activity of the adjacent subunit in a hexamer.2004

    • Author(s)
      Hishida T, Han YW, Fujimoto S, Iwasaki H, Shinagawa H.
    • Journal Title

      Proc Natl Acad Sci U S A. 101

      Pages: 9573-9577

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Rad62 protein functionally and physically associates with the smc5/smc6 protein complex and is required for chromosome integrity and recombination repair in fission yeast.2004

    • Author(s)
      Morikawa H, Morishita T, Kawane S, Iwasaki H, Carr AM, Shinagawa H.
    • Journal Title

      Mol Cell Biol. 24

      Pages: 9401-9413

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Cooperation of the N-terminal Helicase and C-terminal endonuclease activities of Archaeal Hef protein in processing stalled replication forks.2004

    • Author(s)
      Komori K, Hidaka M, Horiuchi T, Fujikane R, Shinagawa H, Ishino Y.
    • Journal Title

      J Biol Chem. 279

      Pages: 53175-53185

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Uncoupling of the ATPase activity from the branch migration activity of RuvAB protein complexes containing both wild-type and ATPase-defective RuvB proteins.2003

    • Author(s)
      Hishida T. et al.
    • Journal Title

      Genes Cells. 8

      Pages: 721-30

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molecular characterization of the Schizosaccharomyces pombe nbsl^+ gene involved in DNA repair and telomere maintenance.2003

    • Author(s)
      Ueno M, et al.
    • Journal Title

      Mol Cell Biol. 23

      Pages: 6553-63

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Two different Swi5-containing protein complexes are involved in mating-type switching and recombination repair in fission yeast.2003

    • Author(s)
      Akamatsu Y, et al.
    • Journal Title

      Proc Natl Acad Sci U S A. 100

      Pages: 15770-5

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Competition between the Rad50 complex and the Kuheterodimer reveals a role for Exo1 in processing double-strand breaks but not telomeres.2003

    • Author(s)
      Tomita K, et al.
    • Journal Title

      Mol Cell Biol. 23

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Role of the Escherichia coli RecQ DNA helicase in SOS signaling and genome stabilization at stalled replication forks.2003

    • Author(s)
      Hishida T, et al.
    • Journal Title

      Proc Natl Acad Sci U S A. 100

      Pages: 15770-5

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Intermolecular ion pairs maintain toroidal structure of Pyrococcus furiosus PCNA.2003

    • Author(s)
      Matsumiya, S., et al.
    • Journal Title

      Prot. Sci. 12

      Pages: 823-831

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] X-ray structural and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease : a novel domain arrangement and a striking similarity between its central endonuclease domain and type II restriction enzymes.2003

    • Author(s)
      Nishino, T., et al.
    • Journal Title

      Structure 11

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Mutational Analysis of Pyrococcus furiosus Replication Factor C based on the Three-Dimensional Structure.2003

    • Author(s)
      Ishino, S., et al.
    • Journal Title

      Extremophiles 7

      Pages: 169-175

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molecular characterization of the Schizosaccharomyces pombe nbsL+ gene involved in DNA repair and telomere maintenance.2003

    • Author(s)
      Ueno M, et al.
    • Journal Title

      Mol Cell Biol. 23

      Pages: 6553-63

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Two different Swi5-containing protein complexes are involved in mating-type switching and recombination repair in fission yeast.2003

    • Author(s)
      Akamatsu Y, et al.
    • Journal Title

      Proc Natl Acad Sci USA. 100

      Pages: 15770-5

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Competition between the Rad50 complex and the Ku heterodimer reveals a role for Exol in processing double-strand breaks but not telomeres.2003

    • Author(s)
      Tomita K, et al.
    • Journal Title

      Mol Cell Biol. 23

      Pages: 5186-5197

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] X-ray structural and biochemical anatomy of an archaeal XPF/Radl/Mus81 family nuclease : a novel domain arrangement and a striking similarity between its central endonuclease domain and type II restriction enzymes.2003

    • Author(s)
      Nishino, T., et al.
    • Journal Title

      Structure 11

      Pages: 445-457

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Saccharomyces cerevisiae MGS1 is essential in strains deficient in the RAD6-denpendent DNA damage tolerance pathway.2002

    • Author(s)
      Hishida T, et al.
    • Journal Title

      EMBO J. 21

      Pages: 2019-29

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein.2002

    • Author(s)
      Takamatsu C, et al.
    • Journal Title

      EMBO Rep. 3

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Schizosaccharomyces pombe rad60 gene is essential for repairing double-strand DNA breaks spontaneously occurring during replication and induced by DNA-damaging agents.2002

    • Author(s)
      Morishita T, et al.
    • Journal Title

      Mol Cell Biol. 22

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of the RuvA-RuvB complex : a structural basis for the Holliday junction migrating motor machinery.2002

    • Author(s)
      Yamada K, et al.
    • Journal Title

      Mol Cell. 10

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] p53 blocks RuvAB promoted branch migration and modulates resolution of Holliday junctions by RuvC.2002

    • Author(s)
      Iwasaki H. et al.
    • Journal Title

      J. Mol. Biol. 316

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Parallel symmetric immobile DNA junctions as substrates for E. coli RuvC Holliday junction resolvase.2002

    • Author(s)
      Sha R, et al.
    • Journal Title

      Biochemistry 41

      Pages: 10985-10993

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Saccharomyces cerevisiae MGS 1 is essential in strains deficient in the RAD6-dependent DNA damage tolerance pathway.2002

    • Author(s)
      Hishida T. et al.
    • Journal Title

      EMBO 21

      Pages: 2019-29

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Schizosaccharomyces pombe rad6O gene is essential for repairing double-strand DNA breaks spontaneously occurring during replication and induced by DNA-damaging agents.2002

    • Author(s)
      Morishita T. et al.
    • Journal Title

      Mol Cell Biol. 22

      Pages: 3537-48

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of the RuvA-RuvB complex : a structural basis for the Holliday junction migrating motor machinery.2002

    • Author(s)
      Yamada K. et al.
    • Journal Title

      Mol Cell. 10

      Pages: 671-81

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A unique beta-hairpin protruding from AAA^+ ATPase domain of RuvB motor protein is involved in the interaction with RuvA DNA recognition protein for branch migration of Holliday junctions.2001

    • Author(s)
      Han YW, et al.
    • Journal Title

      J Biol Chem. 276

      Pages: 35024-8

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A yeast gene, MGS1, encoding a DNA-dependent AAA(+) ATPase is required to maintain genome stability.2001

    • Author(s)
      Hishida T. et al.
    • Journal Title

      Proc Natl Acad Sci U S A. 98

      Pages: 8283-9

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multiple interactions among the components of the recombinational DNA repair system in Schizosaccharomyces pombe.2001

    • Author(s)
      Tsutsui Y, et al.
    • Journal Title

      Genetics. 159

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Mutagenic and nonmutagenic bypass of DNA lesions by Drosophila DNA polymerases dpolη and dpolι.2001

    • Author(s)
      Ishikawa T. et al.
    • Journal Title

      J. Biol. Chem. 276

      Pages: 15155-63

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A unique beta-hairpin protruding from AAA+ ATPase domain of RuvB motor protein is involved in the interaction with RuvA DNA recognition protein for branch migration of Holliday junctions.2001

    • Author(s)
      Han YW, et al.
    • Journal Title

      J. Biol Chem. 276

      Pages: 35024-8

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A yeast gene, MGS1, encoding a DNA-dependent AAA(+) ATPase is required to maintain genoMe stability.2001

    • Author(s)
      Hishida T. et al.
    • Journal Title

      Proc Nall Acad Sci USA. 98

      Pages: 8283-9

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multiple interactions among the components of the recombinational DNA repair system in Schizosaccharomyces pombe. Tsutsui Y,2001

    • Author(s)
      Tsutsui Y. et al.
    • Journal Title

      Genetics. 159

      Pages: 91-91

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Mutagenic and nonmutagenic bypass of DNA lesions by Drosophila DNA polymerases dpol η and dpo1 ι.2001

    • Author(s)
      Ishikawa T. et al.
    • Journal Title

      J. Biol. Chem. 276

      Pages: 15155-15163

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 特許2002

    • Inventor(s)
      石野良純
    • Industrial Property Rights Holder
      生物分子工学研究所
    • Patent Publication Number
      2004-121069
    • Filing Date
      2002-10-01
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Publications] Akamatsu Y, Dziadkowiec D, Ikeguchi M, Shinagawa H, Iwasaki H.: "Two different Swi5-containing protein complexes are involved in mating-type switching and recombination repair in fission yeast."Proc Natl Acad Sci U S A.. 100(26). 15770-15775 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ueno M, Nakazaki T, Akamatsu Y.Watanabe K, Tomita K, Lindsay HD, Shinagawa H, Iwasaki H.: "Molecular characterization of the Schizosaccharomyces pombe nbs1+ gene involved in DNA repair and telomere maintenance."Mol Cell Biol.. 23(18). 6553-6563 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hishida T, Iwasaki H, Han YW, Ohnishi T, Shinagawa H.: "Uncoupling of the ATPase activity from the branch migration activity of RuvAB protein complexes containing both wild-type and ATPase-defective RuvB proteins."Genes Cells.. 8(9). 721-730 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Matsumiya S, Ishino S, Ishino Y, Morikawa K.: "Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA."Protein Sci.. 12(4). 823-831 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ishino S, Oyama T, Yuasa M, Morikawa K, Ishino Y.: "Mutational analysis of Pyrococcus furiosus replication factor C based on the three-dimensional structure."Extremophiles. 7(3). 169-175 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nishino T, Komori K, Ishino Y, Morikawa K.: "X-ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease : similarity between its endonuclease domain and restriction enzymes."Structure (Camb). 11(4). 365-366 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hishida T, Ohno T, Iwasaki H, Shinagawa H.: "Saccharomyces cerevisiae MGS1 is essential in strains deficient in the RAD6-dependent DNA damage tolerance pathway"EMBO J.. 2・8. 2019-2029 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Morishita T, Tsutsui Y, Iwasaki H, Shinagawa H.: "The Schizosaccharomyces pombe rad60 gene is essential for repairing double-strand DNA breaks spontaneously occurring during replication and induced by DNA-damaging agents"Mol. Cell Biol.. 22・10. 3537-3548 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yamada K, Iwasaki H, Shinagawa H, Morikawa K.et al.: "Crystal structure of the RuvA-RuvB complex : a structural basis for the Holliday junction migrating motor machinery"Mol. Cell 2002. 10・3. 671-681 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Komori K, Fujikane R, Shinagawa H, Ishino Y.: "Novel endonuclease in Archaea cleaving DNA with various branched structure"Genes Genet. Syst.. 77・4. 227-241 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Takamatsu C, Shinagawa H, Hamasaki N, Kang D.et al.: "Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein"EMBO Rep. 3・5. 451-456 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Matsumiya S, Ishino S, Ishino Y, Morikawa K.: "Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus"Genes Cells. 7・9. 911-922 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hishida, T., T.Ohno, H.Iwasaki, H.Shinagawa: "Saccharomyces cerevisiae MGS1 is essential in strains deficient in the RAD6-dependent DNA damage tolerance phthway"EMBO J.. 21・6. 1-11 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Tsutsui, Y., FK.Khasanov, H.Shinagawa, H.Iwasaki, VI.Basgkirov: "Multiple interactions among the components of the recombinational DNA repair system in Schizosaccharomyces pombe"Genetics. 159・1. 91-105 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hishida T., H.Iwasaki, T.Ohno, T.Morishita H.Shinagawa: "A yeast gene, MGS1, encoding a DNA-dependent AAA^<(+)> ATPase is required to maintain genome stavility"Proc.Natl.Acad.Sci.USA. 98・15. 8283-8289 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Han Y.-W., H.Iwasaki, T.Miyata, K.Mayanagi, K.Yamada, K.Morikawa, H.Shinagawa: "A unique beta-hairpin protruding from AAA^+ ATPase domain of RuvB motor protein is involved in the interaction with RuvA DNA recognition protein for Branch migration of Holliday junctions"J.Biol.Chem.. 276・37. 35024-35028 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Oyama, T., Y.Ishino, I.K., Cann, S.Ishino.K.Morikawa: "Atomic structure of the clamp loader small subunit from Pyrococcus furiosus"Mol.Cell.. 8・2. 455-463 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nishino, T., K.Komori, Y.Ishino, K.Morikawa: "Dossection of the regional roles of the archaeal Holliday junction resolvase Hjc by structural and mutational analyses"J.Biol.Chem.. 276・38. 35735-35740 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2018-03-28  

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