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Studies on the crystal structure of antiporters for organic compounds and the mechanisms

Research Project

Project/Area Number 13142205
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionOsaka University

Principal Investigator

YAMAGUCHI Akihito  Osaka University, The Institute of Scientific, 産業科学研究所, 教授 (60114336)

Co-Investigator(Kenkyū-buntansha) MURAKAMI Satoshi  Osaka University, The Institute of Scientific and Industrial Research, Associate Professor, 産業科学研究所, 助教授 (30300966)
HIRATA Takahiro  Osaka University, The Institute of Scientific and Industrial Research, Research Associate, 産業科学研究所, 助手 (90333450)
木村 能章  生物分子工学研究所, 主席研究員
Project Period (FY) 2001 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥135,400,000 (Direct Cost: ¥135,400,000)
Fiscal Year 2005: ¥28,500,000 (Direct Cost: ¥28,500,000)
Fiscal Year 2004: ¥28,900,000 (Direct Cost: ¥28,900,000)
Fiscal Year 2003: ¥25,500,000 (Direct Cost: ¥25,500,000)
Fiscal Year 2002: ¥25,500,000 (Direct Cost: ¥25,500,000)
Fiscal Year 2001: ¥27,000,000 (Direct Cost: ¥27,000,000)
KeywordsXenobiotic exporter / X-ray crystal structure / multidrug resistance / AcrB / multidrug efflux / membrane transport / active transporter / xenobiotic recognition / 異物排出タンパク / 結晶構造 / 多剤排出タンパク / フェニルアラニンクラスタ / 基質結合型結晶 / 部位特異的変異導入 / フェニルアラニンクラスター / アンチポーター / 部位特異変異導入 / Cys走査変異 / NEM / 膜タンパク質 / RND / トランスポーター / 分子構造
Research Abstract

This project aimed for determination of the crystal structure of bacterial major xenobiotic exporter AcrB and to reveal the mechanism of xenobiotic recognition and efflux transport. Before this project, no crystal structures of membrane transporters had determined at all. Because the purpose of this project was highly riskful, at first we had one more target to determine two-dimensional structure of AcrB by using electron microscopic analysis as a risk hedge. However, as a result, the risk hedge was not required.
Murakami et al. in our laboratory succeeded to determine the crystal structure of AcrB one year after starting this project. It is not only the first structure of xenobiotic exporters but also the first structure of the secondary transporters. This achievement is highly evaluated as a milestone of the membrane transport study. On the basis of this crystal structure, the xenobiotic recognition mechanism is clearly revealed: The AcrB structure has its entrance for substrates at t … More he side of the molecule opened to the lipid bilayer region of the membrane. AcrB acts as a membrane vacuum cleaner by taking up its substrates from the lipid bilayer region. Because xenobiotics generally enter into cells through lipid bilayer region by simple diffusion, this mechanism efficiently recognize xenobiotics.
Our first structure did not contain bound substrate, therefore, it can not answer the question, "where is the binding site?". On the basis of the first structure, it was estimated as the central cavity of the trimer. One years after, Edward Yu et al. reported that the structure of AcrB in which substrates bound at the central cavity. However, this estimation was no consisted with the mutational studies; there is no amino acid residues important for substrate recognition at the central cavity.
In the last year of this project, Murakami's group succeeded to determine the substrate binding structure of AcrB. The trimer is asymmetric. Only one protomer binds substrate at the phenylalanine cluster region, which is different from the central cavity. The other two porotmers represent the substrate extrusion step and the standing for substrate access step, respectively. In other words, this one crystal contains all snapshots for three steps of efflux transport. On the basis of this crystal structure, it was revealed that substrates are transported by the completely new mechanism named as functionally rotating binding change mechanism similar to FoF1-ATPase. In addition, it was revealed that the extraordinary broad substrate recognition is achieved by the multisite binding with mainly hydrophobic interactions. Less

Report

(6 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (93 results)

All 2006 2005 2004 2003 2002 2001 Other

All Journal Article (61 results) Book (4 results) Patent(Industrial Property Rights) (1 results) Publications (27 results)

  • [Journal Article] Sphingosine 1-phosphate is released from the cytosol of rat platelets in a carrier-mediated manner2006

    • Author(s)
      Nobuyoshi Kobayashi
    • Journal Title

      Journal of Lipid Research 47

      Pages: 614-621

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Sphingosine 1-phosphate is released from the cytosol of rat platelets in a carrier-mediated manner2006

    • Author(s)
      Nobuyoshi Kobayashi, Tsuyoshi Nishi, Takahiro Hirata, Akio Kihara, Takamitsu Sano, Yasuyuki Igarashi, Akihito Yamaguchi
    • Journal Title

      Journal of Lipid Research 47

      Pages: 614-621

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Direct interaction of multidrug efflux transporter AcrB and outer membrane channel TolC detected via site-directed disulfide cross-linking2005

    • Author(s)
      Norihisa Tamura
    • Journal Title

      Biochemistry 44

      Pages: 11115-11121

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ABCA5 resides in lysosomes, and ABCA5 knockout mice develop lysosomal disease-like symptoms2005

    • Author(s)
      Yoshiyuki Kubo
    • Journal Title

      Molecular and Cellular Biology 25

      Pages: 4138-4149

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Genome-Wide analyses of Escherichia coli gene expression responsive to the BaeSR two-component regulatory system2005

    • Author(s)
      Kunihiko Nishino
    • Journal Title

      Journal of Bacteriology 187

      Pages: 1763-1772

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Indole induces the expression of multidrug exporter genes in Escherichia coli2005

    • Author(s)
      Hidetada Hirakawa
    • Journal Title

      Molecular Microbiology 55

      Pages: 1113-1126

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Direct interaction of multidrug efflux transporter AcrB and outer membrane channel To1C detected via site-directed disulfide cross-linking2005

    • Author(s)
      Norihisa Tamura, Satoshi Murakami, Yoshiaki Oyama, Masaji Ishiguro, Akihito Yamaguchi
    • Journal Title

      Biochemistry 44

      Pages: 11115-11121

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ABCA5 resides in lysosomes, and ABCA5 knockout mice develop lysosomal disease-like symptoms2005

    • Author(s)
      Yoshiyuki Kubo, Sayaka Sekiya, Megumi Ohigashi, Chiemi Takenaka, Kyoko Tamura, Shigeyuki Nada, Tsuyoshi Nishi, Akitsugu Yamamoto, Akihito Yamaguchi
    • Journal Title

      Molecular and Cellular Biology 25

      Pages: 4138-4149

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Genome-Wide analyses of Escherichia coli gene expression responsive to the BaeSR two-component regulatory system2005

    • Author(s)
      Kunihiko Nishino, Takeshi Honda, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 187

      Pages: 1763-1772

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Indole induces the expression of multidrug exporter genes in Escherichia coli2005

    • Author(s)
      Hidetada Hirakawa, Yoshihiko Inazumi, Takeshi Masaki, Takahiro Hirata, Akihito Yamaguchi
    • Journal Title

      Molecular Microbiology 55

      Pages: 1113-1126

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Direct interaction of multidrug efflux transporter AcrB and outer membrane channel To1C detected via site-directed disulfide cross-linking2005

    • Author(s)
      Norihisa Tamura
    • Journal Title

      Biochemistry 44

      Pages: 11115-11121

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Indole induces the expression of multidrug exporter genes in Echerichia coli2005

    • Author(s)
      Hidetada Hirakawa
    • Journal Title

      Moiecuiar mlcrobiology 55

      Pages: 1113-1126

    • Related Report
      2005 Annual Research Report
  • [Journal Article] ABCA5 resides in lysosomes and ABCA5 knockout mice develop lysosomal disease-like symptoms.2005

    • Author(s)
      Kubo, Y., S.Sekiya, M.Ohigashi, C.Takenaka, K.Tamura, S.Nada, T.Nishi, A.Yamamoto, A.Yamaguchi.
    • Journal Title

      Molecular and Cellular Biology (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Indole induces the expression of multidrug exporter genes in Escherichia coil.2005

    • Author(s)
      Hirakawa, H., Y.Inazumi, T.Masaki, T.Hirata, A.Yamaguchi
    • Journal Title

      Molecular Microbiology 55

      Pages: 1113-1126

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Genome-Wide analyses of Escherichia coil gene expression responsive to the BaeSR two-component regulatory system.2005

    • Author(s)
      Nishino, K., T.Honda, A.Yamaguchi.
    • Journal Title

      Journal of Bacteriology 187

      Pages: 1763-1772

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Membrane protein crystallization using laser irradiation2004

    • Author(s)
      Hiroaki Adachi
    • Journal Title

      Japanese Journal of Applied Physics 43

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Effects of efflux transporter genes on susceptibility of Escherichia coli to Tigecycline (GAR-936)2004

    • Author(s)
      Takahiro Hirata
    • Journal Title

      Antimicrobial Agents and Chemotherapy 48

      Pages: 2179-2184

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Role of histone-like protein H-NS in multidrug resistance of Escherichia coli2004

    • Author(s)
      Kunihiko Nishino
    • Journal Title

      Journal of Bacteriology 186

      Pages: 1423-1429

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Extramembrane central pore of multidrug exporter AcrB in Escherichia coli plays an important role in drug transport2004

    • Author(s)
      Satoshi Murakami
    • Journal Title

      The Journal of Biological Chemistry 279

      Pages: 3743-3748

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Membrane protein crystallization using laser irradiation2004

    • Author(s)
      Hiroaki Adachi, Satoshi Murakami, Ai Niino, Hiroyoshi Matsumura, Kazufumi Takano, Tsuyoshi Inoue, Yusuke Mori, Akihito Yamaguchi, Takatomo Sasaki
    • Journal Title

      Japanese Journal of Applied Physics 43

    • NAID

      10013744655

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Effects of efflux transporter genes on susceptibility of Escherichia coli to Tigecycline (GAR-936)2004

    • Author(s)
      Takahiro Hirata, Asami Saito, Kunihiko Nishino, Norihisa Tamur, Akihito Yamaguchi
    • Journal Title

      Antimicrob. Agents Chemother. 48

      Pages: 2179-2184

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Role of histone-like protein H-NS in multidrug resistance o Escherichia coli2004

    • Author(s)
      Kunihiko Nishino, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 186

      Pages: 1423-1429

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Extramembrane central pore of multidrug exporter AcrB in Escherichia coli plays an important role in drug transport2004

    • Author(s)
      Satoshi Murakami, Norihisa Tamura, Asami Saito, Takahiro Hirata, Akihito Yamaguchi
    • Journal Title

      The Journal of Biological Chemistry 279

      Pages: 3743-3748

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Effects of efflux transporter genes on susceptibility of Escherichia coil to tigecycline (GAR-936).2004

    • Author(s)
      Hirata, T., A.Saito, K.Nishino, N.Tamura, A.Yamaguchi.
    • Journal Title

      Antimicrobial Agents Chemotherapy 48

      Pages: 2179-2184

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Extramembrane central pore of multidrug exporter AcrB in Escherichia coil plays an important role in drug transport.2004

    • Author(s)
      Murakami, S., N.Tamura, A.Saito, T.Hirata, A.Yamaguchi.
    • Journal Title

      Journal of Biological Chemistry 279

      Pages: 3743-3748

    • Related Report
      2004 Annual Research Report
  • [Journal Article] beta-Lactam resistance modulated by the overexpression of response regulators of two-component signal transduction systems in Escherichia coli2003

    • Author(s)
      Hidetada Hirakawa
    • Journal Title

      Journal of Antimicrobial Chemotherapy 52

      Pages: 576-582

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Mechanisms of drug/H^+ antiport : complete cysteine-scanning mutagenesis and the protein engineering approach2003

    • Author(s)
      Norihisa Tamura
    • Journal Title

      Current Opinion in Chemical Biology 7

      Pages: 570-579

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Roles of TolC-dependent multidrug transporters of Escherichia coli in resistance to beta-lactams2003

    • Author(s)
      Kunihiko Nishino
    • Journal Title

      Antimicrobial Agents and Chemotherapy 47

      Pages: 3030-3033

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multidrug-exporting secondary transporters2003

    • Author(s)
      Satoshi Murakami
    • Journal Title

      Current Opinion in Structural Biology 13

      Pages: 443-452

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Membrane topology of ABC-type macrolide antibiotic exporter MacB in Escherichia coli2003

    • Author(s)
      Nobuyoshi Kobayashi
    • Journal Title

      FEBS Letter 546

      Pages: 241-246

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Cloning of rat ABCA7 and its preferential expression in platelets2003

    • Author(s)
      Mari Sasaki
    • Journal Title

      Biochemical and Biophysical Research Communications 304

      Pages: 777-782

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Global analysis of genes regulated by EvgA of the two-component regulatory system in Escherichia coli2003

    • Author(s)
      Kunihiko Nishino
    • Journal Title

      Journal of Bacteriology 185

      Pages: 2667-2672

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Comprehensive studies of drug resistance mediated by overexpression of response regulators of two-component signal transduction systems in Escherichia coli2003

    • Author(s)
      Hidetada Hirakawa
    • Journal Title

      Journal of Bacteriology 185

      Pages: 1851-1856

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] beta-Lactam resistance modulated by the overexpression o response regulators of two-component signal transduction systems in Escherichia coli2003

    • Author(s)
      Hidetada Hirakawa, Kunihiko Nishino, Junko Yamada, Takahiro Hirata, Akihito Yamaguchi
    • Journal Title

      Journal of Antimicrobial Chemotherapy 52

      Pages: 576-582

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Mechanisms of drug/H^+ antiport : complete cysteine-scanning mutagenesis and the protein engineering approach2003

    • Author(s)
      Norihisa Tamura, Satoko Konishi, Akihito Yamaguchi
    • Journal Title

      Current Opinion in Chemical Biology 7

      Pages: 570-579

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Roles of To1C-dependent multidrug transporters of Escherichia col in resistance to beta-lactams2003

    • Author(s)
      Kunihiko Nishino, Junko Yamada, Hidetada Hirakawa, Takahiro Hirata, Akihito Yamaguchi
    • Journal Title

      Antimicrobial Agents and Chemotherapy 47

      Pages: 3030-3033

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multidrug-exporting secondary transporters2003

    • Author(s)
      Satoshi Murakami, Akihito Yamaguchi
    • Journal Title

      Current Opinion in Structural Biology 13

      Pages: 443-452

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Membrane topology of ABC-type macrolide antibiotic exporter MacB in Escherichia coli2003

    • Author(s)
      Nobuyoshi Kobayashi, Kunihiko Nishino, Takahiro Hirata, Akihito Yamaguchi
    • Journal Title

      FEBS Letter 546

      Pages: 241-246

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Cloning of rat ABCA7 and its preferential expression in platelets2003

    • Author(s)
      Mari Sasaki, Yoshiyuki Kubo, Shigeyuki Nada, Akihito Yamaguchi
    • Journal Title

      Biochemical and Biophysical Research Communications 304

      Pages: 777-782

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Global analysis of genes regulated by EvgA of the two-component regulatory system in Escherichia coli2003

    • Author(s)
      Kunihiko Nishino, Yoshihiko Inazumi, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 185

      Pages: 2667-2672

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Comprehensive studies of drug resistance mediated by overexpression of response regulators of two-component signal transduction systems in Escherichia coli2003

    • Author(s)
      Hidetada Hirakawa, Kunihiko Nishino, Takahiro Hirata, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 185

      Pages: 1851-1856

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of the bacterial multidrug efflux transporter AcrB2002

    • Author(s)
      Satoshi Murakami
    • Journal Title

      Nature 419

      Pages: 587-593

    • NAID

      10012663441

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The putative response regulator BaeR stimulates multidrug resistance of Escherichia coli via a novel multidrug exporter system, MdtABC2002

    • Author(s)
      Satoshi Nagakubo
    • Journal Title

      Journal of Bacteriology 184

      Pages: 4161-4167

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] EvgA of the two-component signal transduction system modulates production of the YhiUV multidrug transporter in Escherichia coli2002

    • Author(s)
      Kunihiko Nishino
    • Journal Title

      Journal of Bacteriology 184

      Pages: 2319-2323

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Membrane topology of a multidrug efflux transporter, AcrB in Escherichia coli2002

    • Author(s)
      Erika Fujihira
    • Journal Title

      Journal of Biochemistry(Tokyo) 131

      Pages: 145-151

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of the bacterial multidrug efflux transporter AcrB2002

    • Author(s)
      Satoshi Murakami, Ryosuke Nakashima, Eiki Yamashita, Akihito Yamaguchi
    • Journal Title

      Nature 419

      Pages: 587-593

    • NAID

      10012663441

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The putative response regulator BaeR stimulates multidrug resistance of Escherichia coli via a novel multidrug exporter system, MdtABC2002

    • Author(s)
      Satoshi Nagakubo, Kunihiko Nishino, Takahiro Hirata, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 184

      Pages: 4161-4167

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] EvgA of the two-component signal transduction system modulates production of the YhiUV multidrug transporter in Escherichia coli2002

    • Author(s)
      Kunihiko Nishino, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 184

      Pages: 2319-2323

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Membrane topology of a multidrug efflux transporter, AcrB in Escherichia coli2002

    • Author(s)
      Erika Fujihira, Norihisa Tamura, Akihito Yamaguchi
    • Journal Title

      Journal of Biochemistry(Tokyo) 131

      Pages: 145-151

    • NAID

      10010645229

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Analysis of a complete library of putative drug transporter genes in Escherichia coli2001

    • Author(s)
      Kunihiko Nishino
    • Journal Title

      Journal of Bacteriology 183

      Pages: 5803-5812

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Novel macrolide-specific ABC-type efflux transporter in Escherichia coli2001

    • Author(s)
      Nobuyoshi Kobayashi
    • Journal Title

      Journal of Bacteriology 183

      Pages: 5639-5644

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Type II topoisomerase mutations in fluoroquinolone-resistant clinical strains of Pseudomonas aeruginosa isolated in 1998 and 1999 : role of target enzyme in mechanism of fluoroquinolone resistance2001

    • Author(s)
      Takaaki Akasaka
    • Journal Title

      Antimicrobial Agents and Chemotherapy 45

      Pages: 2263-2268

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Complete cysteine-scanning mutagenesis and site-directed chemical modification of the Tn10-encoded metal-tetracycline/H^+ antiporter2001

    • Author(s)
      Norihisa Tamura
    • Journal Title

      The Journal of Biological Chemistry 276

      Pages: 20330-20339

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Overexpression of the response regulator evgA of the two-component signal transduction system modulates multidrug resistance conferred by multidrug resistance transporters2001

    • Author(s)
      Kunihiko Nishino
    • Journal Title

      Journal of Bacteriology 183

      Pages: 1455-1458

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Monoclonal antibody that binds to the central loop of the Tn10-encoded metal tetracycline/H^+ antiporter of Escherichia coli2001

    • Author(s)
      Shigeyuki Nada
    • Journal Title

      Journal of Biochemistry(Tokyo) 129

      Pages: 87-91

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Analysis of a complete library of putative drug transporter genes in Escherichia coli2001

    • Author(s)
      Kunihiko Nishino, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 183

      Pages: 5803-5812

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Novel macrolide-specific ABC-type efflux transporter in Escherichia coli2001

    • Author(s)
      Nobuyoshi Kobayashi, Kunihiko Nishino, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 183

      Pages: 5639-5644

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Type II topoisomerase mutations in fluoroquinolone-resistant clinical strains of Pseudomonas aeruginosa isolated in 1998 and 1999 : role of target enzyme in mechanism of fluoroquinolone resistance2001

    • Author(s)
      Takaaki Akasaka, Mayumi Tanaka, Akihito Yamaguchi, Kenichi Sato
    • Journal Title

      Antimicrobial Agents and Chemotherapy 45

      Pages: 2263-2268

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Complete cysteine-scanning mutagenesis and site-directed chemical modification of the Tn10-encoded metal-tetracycline/H^+ antiporter2001

    • Author(s)
      Norihisa Tamura, Satoko Konishi, Shinobu Iwaki, Tomomi Kimura-Someya, Shigeyuki Nada, Akihito Yamaguchi
    • Journal Title

      The Journal of Biological Chemistry 276

      Pages: 20330-20339

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Overexpression of the response regulator evgA of the two-component signal transduction system modulates multidrug resistance conferred by multidrug resistance transporters2001

    • Author(s)
      Kunihiko Nishino, Akihito Yamaguchi
    • Journal Title

      Journal of Bacteriology 183

      Pages: 1455-1458

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Monoclonal antibody that binds to the central loop of the Tn10-encoded metal tetracycline/H^+ antiporter of Escherichia coli2001

    • Author(s)
      Shigeyuki Nada, Satoshi Murakami, Shizuka Okamoto, Yoshiyuki Kubo, Akihito Yamaguchi
    • Journal Title

      Journal of Biochemistry(Tokyo) 129

      Pages: 87-91

    • NAID

      130003534056

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] タンパク質科学 構造・物性・機能(編集者 : 後藤祐児、桑島邦博、谷澤克行)2005

    • Author(s)
      山口明人(分担執筆)
    • Total Pages
      579
    • Publisher
      化学同人
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] タンパク質のかたちから生命の謎を解く 生物マシーナリー構造生物学の最前線(編集者 : 田之倉優)2005

    • Author(s)
      村上聡(分担執筆)
    • Total Pages
      232
    • Publisher
      株式会社クバプロ
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] タンパク質科学 構造・物性・機能2005

    • Author(s)
      山口明人(分担執筆)
    • Total Pages
      579
    • Publisher
      化学同人
    • Related Report
      2005 Annual Research Report
  • [Book] タンパク質のかたちから生命の謎を解く 生物マシーナリー構造生物学の最前線2005

    • Author(s)
      村上聡(分担執筆)
    • Total Pages
      232
    • Publisher
      株式会社クバプロ
    • Related Report
      2005 Annual Research Report
  • [Patent(Industrial Property Rights)] L-システイン生産菌及びL-システインの製造法2004

    • Inventor(s)
      高木 博史, 中森 茂, 山口 明人, 西野 邦彦
    • Industrial Property Rights Holder
      味の素株式会社
    • Industrial Property Number
      2004-103652
    • Filing Date
      2004-03-31
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Publications] M.Sasaki, A.Shoji, Y.Kubo, S.Nada, A.Yamaguchi: "Cloning of rat ABCA7 and its preferential expression in platelets."Biochem Biophys Res Commun. 304. 777-782 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] N.Kobayashi, K.Nishino, T.Hirata, A.Yamaguchi: "Membranetopology of ABC-type macrolide antibiotic exporter MacB in Escherichia coli."FEBS Lett. 546. 241-246 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Nishino, J.Yamada, H.Hirakawa, T.Hirata, A.Yamaguchi: "Roles of TolC-dependent multidrug transporters of Escherichia coli in resistance to beta-lactams."Antimicrob Agents Chemother. 47. 3030-3033 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Hirakawa, K.Nishino, J.Yamada, T.Hirata, A.Yamaguchi: "β-lactam resistance modulated by the overexpressiqn of response regulators of two-component signal transduction systems in Escherichia coli."J Antimicrob Chemother. 52. 576-582 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] S.Murakami, A.Yamaguchi: "Multidrug-exporting secondary transporters."Curr Opin Struct Biol. 13. 443-452 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] N.Tamura, S.Konishi, A.Yamaguchi: "Mechanisms of drug/H^+ antiport : complete cysteine-scanning mutagenesis and the protein engineering approach."Curr Opin Chem Biol. 7. 570-579 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] S.Murakami, N.Tamura, A.Saito, T.Hirata, A.Yamaguchi: "Extra-membrane central pore of multidrug exporter AcrB in Escherichia coli plays an important role in drug transport."J Biol Chem. 279. 3743-3748 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Nishino, A.Yamaguchi: "Role of Histone-Like Protein H-NS in Multidrug Resistance of Escherichia coli"J.Bacteriol.. 186. 1423-1429 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Hirata, A.Saito, K.Nishino, N.Tamura, A.Yamaguchi: "The Effects of Efflux Transporter Genes on the Susceptibility of E.coli to Tigecycline (GAR-936),9-(t-butylglycylamido)-minocycline."Antimicrob Agents Chemother.. (in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 村上 聡: "多剤排出トランスポーターAcrBの結晶構造解析"構造生物学. 4. 155-160 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 村上聡, 中島良介, 山下栄樹, 山口明人: "大腸菌多剤排出トランスポーターAcrBの結晶構造解析"放射光. 16. 204 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 村上聡, 中島良介, 山下栄樹, 山口明人: "大腸菌多剤排出トランスポーターAcrBの結晶構造解析"日本結晶学会誌. 45. 256-261 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] S.Nagakubo, K.Nishino, T.Hirata, A.Yamaguchi: "The putative response regulator BaeR stimulates multidrug resistance of Escherichia coli via a novel multidrug exporter system, MdtABC"J Bacteriol.. 184. 4161-4167 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Murakami, R.Nakashima, E.Yamashita, A.Yamaguchi: "Crystal structure of the bacterial multidrug efflux transporter, AcrB"Nature. 419. 587-593 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Hirakawa, K.Nishino, T.Hirata, A.Yamaguchi: "Comprehensive studies on drug resistance mediated by the overexpression of response regulators of two-component signal transduction systems in Escherichia coli"J Bacteriol.. 185. 1851-1856 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] K.Nishino, Y.Inazumi, A.Yamaguchi: "Global analysis of genes regulated by EvgA of the two-component regulatory system in Escherichia coli"J Bacteriol.. 185(in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 西野邦彦, 山口明人: "細菌ゲノムに潜む薬剤耐性因子"日本細菌学雑誌. 57. 453-464 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 村上聡, 山口明人: "多剤排出トランスポーターAcrBの結晶構造解析"細胞工学. 21. 1520-1521 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 村上聡, 山口明人: "多剤排出トランスポーターの結晶構造、ついに決まる"蛋白質核酸酵素. 48. 26-32 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Shigeyuki NADA, Satoshi MURAKAMI, Shizuka OKAMOTO, Yoshiyuki KUBO, Akihito YAMAGUCHI: "Monoclonal Antibody That Binds to the Central Loop of the Tn10-Encoded Metal-Tetracycline/H^+ Antiporter of Escherichia coli"Journal of Biochemistry. 129・1. 87-91 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kunihiko NISHINO, Akihito YAMAGUCHI: "Overexpression of the Response Regulator evgA of the Two-Component Signal Transduction System Modulates Multidrug Resistance Conferred by Multidrug Resistance Transporters"Journal of Bacteriology. 183・4. 1445-1458 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Norihisa TAMURA, Satoko KONISHI, Shinobu IWAKI, Tomomi KIMURA-SOMEYA, Shigeyuki NADA, Akihito YAMAGUCHI: "Complete Cysteine-Scanning Mutagenesis and Site-Directed Chemical Modification of the Tn10-Encoded Metal-Tetracycline/H^+ Antiporter"Journal of Biological Chemistry. 276・23. 20330-20339 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Takaaki AKASAKA, Mayumi TANAKA, Akihito YAMAGUCHI, Kenichi SATO: "Type II Topoisomerase Mutations in Fluoroquinolone-resistant Clinical Strains of Pseudomonas aeruginosa Isolated in 1998 and 1999 : Role of Target Enzyme in Mechanism of Fluoroquinolone Resistance"Antimicrobial Agents and Chemotherapy. 45・8. 2263-2268 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nobuyoshi Kobayashi, Kunihiko NISHINO, Akihito YAMAGUCHI: "Novel Macrolide-specific ABC-type Efflux Transporter in Escherichia coli"Journal of Bacteriology. 183・19. 5639-5644 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kunihiko NISHINO, Akihito YAMAGUCHI: "Analysis of a Complete Library of Putative Drug Transporter Genes in Escherichia col"Journal of Bacteriology. 183・20. 5803-5812 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Eruja FUJIHIRA, Norihisa TAMURA, Akihito YAMAGUCHI: "Membrane Topology of a Multidrug Efflux Transporter, AcrB, in Escherichia coli"Journal of Biochemistry. 131・1. 145-151 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kunihiko NISHINO, Akihito YAMAGUCHI: "EvgA of the two-component signal transduction system modulates production of the YhiUV multidrug transporter in Escherichia coli"Journal of Bacteriology. 184・3(in press). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2018-03-28  

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