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Mechanism of tumorigenesis by abnormal modification and regulation of intracellular molecules

Research Project

Project/Area Number 13214086
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKumamoto University

Principal Investigator

NAKAO Mitsuyoshi  Institute of Molecular Embryology and Genetics Kumamoto University, Professor, 発生医学研究センター, 教授 (00217663)

Project Period (FY) 2000 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥35,200,000 (Direct Cost: ¥35,200,000)
Fiscal Year 2004: ¥8,400,000 (Direct Cost: ¥8,400,000)
Fiscal Year 2003: ¥8,700,000 (Direct Cost: ¥8,700,000)
Fiscal Year 2002: ¥9,000,000 (Direct Cost: ¥9,000,000)
Fiscal Year 2001: ¥9,100,000 (Direct Cost: ¥9,100,000)
Keywordscancer / DNA methylation / chromatin / protein / posttranslational modification / epigenetics / Rene expression / genomic instability / 転写 / 細胞増殖分化 / メチル化DNA結合タンパク質 / ユビキチン / SUMO / メチル化CpG結合タンパク質 / タンパク質分解 / ユビキチンリガーゼ
Research Abstract

In conversion of biological information from DNA to RNA and protein, these molecules are chemically modified and regulated in response to cellular conditions. The whole processes except for the DNA sequence itself are often called as epigenetic regulation in a broad sense, which includes cytosine methylation and chromatin, and posttranslational modification of proteins. Since gene function is controlled at the both DNA and protein levels, these mechanisms are frequently dysregulated in malignantly transformed and cancer cells. This research project has focused on the two regulatory mechanisms, (1) transcriptional regulation by DNA methylation and chromatin, and (2) protein modification and degradation, from the viewpoint of physiological and pathological roles in carcinogenesis. Methyl-CpG binding domain protein MBD1 represses transcription from tumor suppressor genes in cancer cells in DNA methylation-mediated manner. We found that MBD1 interacts with at least two histone methyltransferase complexes, Suv39h1-HP1 heterochromatic complex and MCAF1-SETDB1 euchromatic complex, for DNA methylation-based gene repression. During this study, we first identified MCAF1 and MCAF2 as a new epigenetic regulator family of proteins. Further, MBD1 interacts with methylpurine-DNA glycosylase to link DNA methylation and base excision repair in chromatin. Regarding protein modification, we reported that HECT-domain ubiquitin ligase hHYD ubiquitinates DNA topoisomerase II-binding protein for DNA damage response. It was also reported that PML-nuclear bodies are involved in serum response transcription of c-fos gene, and that serum response factor (SRF) is modulated by SUMO-1. Similarly, aryl hydrocarbon receptor nuclear transporter (ARNT), which is involved in chemical carcinogenesis and hypoxia-induced transcription, is modulated by SUMO conjugation system.

Report

(5 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (47 results)

All 2004 2003 2002 2001 2000 Other

All Journal Article (19 results) Book (2 results) Patent(Industrial Property Rights) (2 results) Publications (24 results)

  • [Journal Article] Epigenetic system : a pathway to malignancies and a therapeutic target2004

    • Author(s)
      Nakao, M., et al.
    • Journal Title

      Int.J.Hematol. 80

      Pages: 103-107

    • NAID

      10013501322

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Generation of SUMO-1 modified proteins in E.coli : towards understanding the biochemistry / structural biology of the SUMO-1 pathway2004

    • Author(s)
      Uchimura, Y., et al.
    • Journal Title

      FEBS Lett. 564

      Pages: 85-90

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Overproduction of eukaryotic SUMO-1- and SUMO-2-conjugated proteins in Escherichia coli.2004

    • Author(s)
      Uchimura, Y., et al.
    • Journal Title

      Anal.Biochem. 331

      Pages: 204-206

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Methylated DNA-binding domain 1 and methylpurine-DNA glycosylase links transcriptional repression and DNA repair in chromatin2003

    • Author(s)
      Watanabe, S., et al.
    • Journal Title

      Proc.Natl.Acad.Sci.USA. 100

      Pages: 12859-12864

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] MCAF mediates MBD1-dependent transcriptional repression2003

    • Author(s)
      Fujita, N., et al.
    • Journal Title

      Mol.Cell.Biol. 23

      Pages: 2834-2843

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] PML-nuclear bodies are involved in cellular serum response2003

    • Author(s)
      Matsuzaki, K., et al.
    • Journal Title

      Genes Cells 8

      Pages: 275-286

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Methy1-CpG binding domain 1 (MBD1) interacts with Suv39hl-HP1 heterochromatic complex for DNA methylation-based transcriptional repression2003

    • Author(s)
      Fujita, N., et al.
    • Journal Title

      J.Biol.Chem. 278

      Pages: 24132-24138

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] PML-nuclear bodies are involved in cellular serum response2003

    • Author(s)
      Matsuzaki, K., et al.
    • Journal Title

      Genes.Cells 8

      Pages: 275-286

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Serum response factor is modulated by the SUMO-1 conjugation system2003

    • Author(s)
      Matsuzaki, K., et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 306

      Pages: 32-38

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The aryl hydrocarbon receptor nuclear transporter is modulated by the SUMO-1 conjugating system2002

    • Author(s)
      Tojo, M., et al.
    • Journal Title

      J.Biol.Chem. 277

      Pages: 46576-46585

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Cooperation of HECT-domain ubiquitin ligase hHYD and DNA topoisomerase II-binding protein for DNA damage response2002

    • Author(s)
      Honda, Y., et al.
    • Journal Title

      J.Biol.Chem. 277

      Pages: 3599-3605

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Cooperation of HECT-domain ubiquitin ligase hHYD and DNA topoisomerase II-binding protein. for DNA damage response2002

    • Author(s)
      Honda, Y., et al.
    • Journal Title

      J.Biol.Chem. 277

      Pages: 3599-3605

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Solution structure of the methyl-CpG-binding domain of human MBD1 in complex with a methylated DNA2001

    • Author(s)
      Ohki, I., et al.
    • Journal Title

      Cell 105

      Pages: 487-497

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Mechanism of transcriptional regulation by methyl-CpG binding protein MBD12000

    • Author(s)
      Fujita, N., et al.
    • Journal Title

      Mol.Cell.Biol. 20

      Pages: 5107-5118

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins

    • Author(s)
      Ichimura, T., et al.
    • Journal Title

      J.Biol.Chem. (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins

    • Author(s)
      Ichimura, T., et al.
    • Journal Title

      J.Biol.Chem. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Transcriptional repression and heterochromatin formation by MBD1 and MCAF/AM family proteins

    • Author(s)
      Ichimura, T., et al.
    • Journal Title

      J.Biol.Chem. (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Epigenetic silencing of the imprinted gene ZAC by DNA methylation is an early event in the progression of human ovarian cancer

    • Author(s)
      Kamikihara, T., et al.
    • Journal Title

      Int.J.Cancer (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Transcriptional blockade induces p53-dependent apoptosis associated with translocation of p53 to mitochondria

    • Author(s)
      Arima Y., et al.
    • Journal Title

      J.Biol.Chem. (in press)

    • Related Report
      2004 Annual Research Report
  • [Book] エピジェネティクスがわかる(押村光雄 編)2004

    • Author(s)
      中尾光善, 他(分担)
    • Publisher
      羊土社)
    • Related Report
      2004 Annual Research Report
  • [Book] 分子生物学イラストレイテッド(田村隆明, 山本雅 編集)2002

    • Author(s)
      中尾光善
    • Publisher
      羊土社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] タンハク質ポリマー大量生産の基盤技術2003

    • Inventor(s)
      斉藤 寿仁, 中尾 光善, 内村 康寛
    • Industrial Property Rights Holder
      財団法人くまもとテクノ産業財団
    • Filing Date
      2003-03-11
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] タンハク質ポリマー及びその製造方法2002

    • Inventor(s)
      斉藤 寿仁, 中尾 光善
    • Industrial Property Rights Holder
      財団法人くまもとテクノ産業財団
    • Filing Date
      2002-10-01
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Watanabe, S., et al.: "Methylated DNA-binding domain 1 and methylpurine-DNA glycosylase links transcriptional repression and DNA repair in chromatin"Proc.Natl.Acad.Sci.USA.. 100. 12859-12864 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Fujita, N., et al.: "MCAF mediates MBD1-dependent transcriptional repression"Mol.Cell.Biol.. 23. 2834-2843 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Fujita, N., et al.: "Methyl-CpG binding domain 1 (MBD1) interacts with Suv39h1-HP1 heterochromatic complex for DNA methylation-based transcriptional repression"J.Biol.Chem.. 278. 24132-24138 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Matsuzaki, K., et al.: "PML-nuclear bodies are involved in cellular serum response"Genes Cells. 8. 275-286 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Matsuzaki, K., et al.: "Serum response factor is modulated by the SUMO-1 conjugation system"Biochem.Biophys.Res.Commun.. 306. 32-38 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yasuda, J., et al.: "Nedd4 regulates Egress of Ebola virus-like particles from host cells"J.Virol.. 77. 9987-9992 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Fujita, N.: "MCAF mediates MBD1-dependent transcriptional repression"Mol.Cell.Biol.. (in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Matsuzaki, K.: "PML-nuclear bodies are involved in cellular serum response"Genes Cells. (in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Tojo, M.: "The aryl hydrocarbon receptor nuclear transporter is modulated by the SUMO-1 conjugating system"J.Biol.Chem.. 277. 46576-46585 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Honda, Y.: "Cooperation of HECT-domain ubiquitin ligase hHYD and DNA topoisomerase II-binding protein for DNA damage response"J.Biol.Chem.. 277. 3599-3605 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kagotani, K.: "Visualization of transcription-dependent association of imprinted genes with the nuclear matrix"Exp.Cell Res.. 274. 189-196 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kudo, S.: "Functional characterization of MeCP2 mutations found in male patients with X-linked mental retardation"J.Med.Genet.. 39. 132-136 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ohki, I.: "Solution structure of the methyl-CpG-binding domain of human MBD1 in complex with a methylated DNA"Cell. 105. 487-497 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Takizawa, T.: "DNA methylation is a critical cell-intrinsic determinant of astrocyte differentiation in the fetal brain"Dev. Cell. 1. 749-758 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Meguro, M.: "A novel maternally expressed gene, ATP1OC, encodes a putative aminophospholipid translocase associated with Angelman syndrome"Nature Genet.. 28. 19-20 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nakao, M.: "Epigenetics : interactions of DNA methylation and chromatin"Gene. 278. 25-31 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Honda, Y.: "Cooperation of HECT-domain ubiquitin ligase hHYD and DNA topoisomerase II-binding protein for DNA damage response"J. Biol. Chem.. (in press).

    • Related Report
      2001 Annual Research Report
  • [Publications] EL-Gazzar, M.A.: "PU.1 is involved in the regulation of B lineage-associated and developmental stage-dependent expression of the germinal center-associated DNA-primase GANP"J. Biol. Chem.. 276. 48000-48008 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kino, T.: "Identification of the cis-acting region in the NF2 gene promoter as a potential target for mutation and methylation-dependent silencing in schwannoma"Genes Cells. 6. 441-454 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Takebayashi, S.: "5-aza-2'-deoxycytidine induces histone hyperacetylation of mouse centromeric heterochromatin by a mechanism independent of DNA demethylation"Biochem. Biophys. Res. Commun.. 288. 921-926 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Meguro, M.: "Large-scale evaluation of imprinting status in the Prader-Willi syndrome region : an imprinted direct repeat cluster resembling small nucleolar RNA genes"Hum. Mol. Genet.. 10. 83-394 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Sudo, T.: "Activation of Cdh1-dependent APC is required for G1 cell cycle arrest and DNA damage-induced G2 checkpoint in vertebrate cells"EMBOJ.. 20. 6499-6508 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kaneko, T.: "Calpain-dependent proteolysis of merlin occurs by oxidative stress in meningiomas"Cancer. 92. 2662-2672 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nakao, M.: "Regulation of transcription and chromatin by methyl-CpG binding protein MBD1"Brain Dev.. 23 Suppl1. S174-S176 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2018-03-28  

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