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Development of methods of sampling survey and analysis for field conservation genetics

Research Project

Project/Area Number 13308013
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Statistical science
Research InstitutionTHE UNIVERSITY OF TOKYO

Principal Investigator

KISHINO Hirohisa  The University of Tokyo, Graduate School of Agricultural and Life Sciences, Professor, 大学院・農学生命科学研究科, 教授 (00141987)

Co-Investigator(Kenkyū-buntansha) HAYASHI Takeshi  National Institute of Agrobiological Sciences, Genome and Biodiversity Research Center, Researcher, ゲノム研究グループ, 研究員
KITADA Shuichi  Tokyo University of Marine Science and Technology, Graduate school of Marine Science and Technology, Professor, 大学院・水産学研究科, 教授 (10262338)
WASHITANI Izumi  The University of Tokyo, Graduate School of Agricultural and Life Science, Professor, 大学院・農学生命科学研究科, 教授 (40191738)
NAKAMICHI Reiichiro  The University of Tokyo, The Institute of Medical Science Human Genome Center, Postdoctoral fellow, ヒトゲノムセンター, 特別研究員(PD)
HARUKI Tatsuta  National Institute for Environmental Studies, Genome and Biodiversity Research Center, Researcher, 生態リスク評価研究室, 研究員 (50370268)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥46,410,000 (Direct Cost: ¥35,700,000、Indirect Cost: ¥10,710,000)
Fiscal Year 2003: ¥14,950,000 (Direct Cost: ¥11,500,000、Indirect Cost: ¥3,450,000)
Fiscal Year 2002: ¥13,650,000 (Direct Cost: ¥10,500,000、Indirect Cost: ¥3,150,000)
Fiscal Year 2001: ¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Keywordsrare populations and gene flow / population structure and linkage disequilibrium / inbreeding depression and segregation distortion / QTL analysis of outbreeding population / polymorphic markers / viral molecular evolution / change in rate of molecular evolution / 有効花粉輸送距離と父性解析 / 受粉パターンと種子生産 / 他殖性植物のQTL解析 / ハマダラカの遺伝子交流 / バッタ交雑帯と遺伝的隔離
Research Abstract

The purpose of our project is to develop efficient methods of field survey and data analysis for conservation genetics by close collaboration between field ecologists and statisticians. The achievement is summarized as :
a)Population genetics approach in risk analysis of micro-organism : We developed a partial likelihood procedure to infer the effective population sizes and rates of molecular evolutions of viral sequences within hosts, and investigated an optimal sampling design of viral sequences for the inference of adaptive evolution within a host. Analysis of HIV-1 env gene showed a negative correlation between them.
b)Primula as an endangered plant population : Method of QTL mapping for outbreeding populations was developed, and crossing experiments of different types of floral architectures were conducted to estimate the QTLs of the related traits. By paternity analysis of microsattelite markers, the extent of gene flow was studied.
c)Anopheles dirus mosquitoes as vectors of malaria … More : Samples were collected from the whole area of Southeast Asia. Population genetic analysis of COI and CoII genes in mitochondria revealed evidence of introgression over the species boundary. Experimental design of the number of microsattelite markers and categorization of genotypes were studied for the inference of population structure. Analysis of these genes with a semiparametric coalescent model implied a bottleneck around some 0.2MYA followed by population expansion.
d)Hybrid zone of grasshoppers in Spain : Samples of Chorthippus brunneus and C jacobsi were collected from the hybrid zone in northern Spain and crossing experiment was conducted. Software was developed to measure the genetic background of the song, an important character contributing to prezygotic isolation. Software of automatic typing of AFLP markers was also developed for QTL analysis.
e)Conservation genetics in stock enhancement : To study how stock enhancement program may have affected the genetic structure in the wild population, an empirical Bayes procedure was developed to estimate the extent of population differentiation and mitochondrial DNA data of Pagrurs major (Japanese red sea bream) was analyzed. A hierarchical model for simultaneous detection of linkage disequilibrium and genetic differentiation of subdivided populations. Its efficacy was examined by numerical simulation and the analyses of isozyme data Plecoglossus altivelis altivelis (ayu) and SNP data from human populations. Less

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (95 results)

All Other

All Publications (95 results)

  • [Publications] Kishino, H., Thorne, J.L., Bruno, W.J.: "Performance of a divergence time estimation method under a probabilistic model of rate evolution."Molecular Biology and Evolution. 18. 352-361 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyakoshi, Y., Nagata, M., Sugiwakam, K., Kitada, S.: "Commercial harvest of hatchery-reared masu salmon Oncorhynchus masousmolts estimated by a coast-wide sampling program in Hokkaido, northern Japan, and the two-stage sampling schemes of landings."Fishery Science.. 67. 126-133 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyakoshi, Y., Nagata, M., Kitada, S.: "Effect of smolt size on post-release survival of hatchery-reared masu salmon Oncorhynchus masou."Fishery Science. 67. 134-137 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyakoshi, Y., Nagata, M., Take, Kitada, S.: "Effectiveness of stocking masu salmon Oncorhynchus masou fry as a mean of increasing commercial catches."Fishery Science. 67. 1184-1186 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nakamichi, R., Ukai, Y., Kishino, H.: "Resolving of closely linked quantitative trait loci with a genetic algorithm."Genetics.. 158. 463-475 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tatsuta, H., Butlin, R.K.: "Amplified fragment length polymorphism for assessing genetic structure in grasshopper populations."Journal of Orthoptera Research.. 10. 203-207 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Waddell, P.J., Kishino, H., Ota, R.: "A phylogenetic foundation for comparative mammalian genomics."Genome Informatics Series. 12. 141-151 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Washitani, I.: "Plant conservation ecology for management and restoration of riparian habitats of lowland Japan"Population Ecology. 43. 189-195 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 北田修一, 関谷幸生, 横田賢史: "水槽実験によるPetersen法の実用性の検討"日本水産学会誌. 67. 203-208 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 夏目雅史, 北田修一, 國廣靖志, 木下貴裕: "標識再捕に基づくオホーツク海南部におけるキチジの資源量推定"日本水産学会誌. 67. 821-828 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hayashi, T., Awata, T., Yasue, H.: "On the efficiency of composite interval mapping in an outbred population."Gene & Genetic Systems. 77. 209-217 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kitada, S., Tezuka, K.: "Longitudinal logbook survey designs for estimating recreational fishery catch with application to ayu (Plecoglossus altivelis)."Fishery Bulletin.. 100. 228-243 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsumura, C., Washitani, I.: "Heterostylous morph differences in pollen transfer and deposition patterns in Primula sieboldii on a visitation by a que with a semi-natural experimental system."Plant Species Biology. 17. 1-12 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ohizumi, H., Matsuishi, T., Kishino, H.: "Winter sightings of humpback and Bryde's whales in tropical waters of western and central North Pacific."Aquatic Mammals. 28. 73-77 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Seo, T.-K., Thorne, J.L., Hasegawa, M., Kishino, H.: "A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times."Bioinformatics.. 18. 115-123 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Seo, T.-K., Thorne, J.L., Hasegawa, M., Kishino, H.: "Estimation of effective population size of HIV-1 within a host : A pseudo-maximum likelihood approach."Genetics.. 160. 1283-1293 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Thorne, J.L., Kishino, H.: "Divergence time and evolutionary rate estimation with multilocus data."Systematic Biology. 51. 689-702 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Waddell, P.J., Kishino, H., Ota, R.: "Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees."Genome Informatics Series. 13. 82-92 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 安藤大成, 宮腰靖之, 竹内勝巳, 永田光博, 佐藤孝弘, 柳井清治, 北田修一: "都市近郊の河川におけるサクラマス幼魚の遊漁による釣獲尾数の推定"日本水産学会誌. 68. 52-60 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 岸野洋久, Thorne, J.L.: "分子進化速度のベイズ型階層モデル"統計数理. 50. 17-31 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 立田晴記: "Blaesoxipha grisea Meigen (Diptera : Sarcophagidae)の寄主初記録"Japanese Journal of Entomology (New Series). 5. 120-120 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hasegawa, M., Thorne, J.L., Kishino, H.: "Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution."Gene & Genetic Systems.. 78. 267-283 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ishihama, F., Nakano, C., Ueno, S., Ajima, M., Tsumura, Y., Washitani, I.: "Seed set and gene flow patterns in an experimental population of an endangered heterostylous herb with controll density."Functional Ecology. 17. 680-689 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nakano, C, Washitani, I.: "Variability and specialization of plant-pollinator systems in a northern maritime grassland."Ecological Research. 18. 221-246 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Robinson, D.M., Jones, D.T., Kishino, H., Goldman, N., Thorne, J.L.: "Protein evolution with dependence among codons due to tertiary structure."Molecular Biology and Evolution.. 20. 1692-1704 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okayama, Y., Nagai, M., Washitani, I.: "Testing the 'assortative mating' hypothesis on a variation maintenance mechanism for flowering time within a forest-floor population of Primula sieboldii."Plant Species Biology. 18. 1-11 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tatsuta, H., Makino, S.: "Rate of Strepsipteran parasization among overwintered females of the hornet Vespa analis (Hymenoptera : Vespidae)."Environmental Entomology. 32. 175-179 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ueno, S., Tsumura, Y., Washitani, I.: "Cost-effective method to synthesize fluorescently labeled DNA size standards using cloned AFLP fragments."Bio Techniques.. 34. 1-3 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ueno, S., Washitani, I., Tsumura, Y.: "Development of microsatellite markers in Primula sieboldii E.Morren, a threatened Japanese perennial herb."Conservation Genetics.. 4. 809-811 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Zhang, Z., Inomata, N., Yamazaki, Y., Kishino, H.: "Evolutionary history and mode of the amylase multigene family in Drosophila."Journal of Molecular Evolution. 57. 702-709 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 鷲谷いづみ: "サクラソウ・エコゲノム・プロジェクト-遺伝子の多様性を考慮した野生植物保全戦略の構築に向けて-"環境研究. 129. 70-75 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kitada, S., Kishino, H.: "Simultaneous detection of linkage disequilibrium and genetic differentiation of subdivided populations."Genetics.. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyakoshi, Y., Koyama, T., Aoyama, T., Sakakibara, S., Kitada, S.: "Estimates of numbers of masu salmon caught by recreational fishermen in the coastal area off Iburi, Hokkaido, Japan."Fishery Science. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Noda, H., Muraoka, H., Washitani, I.: "Morphological and physiological acclimation responses to contrasting light and water regimes in Primula sieboldii, an endangered clonal herb in Japan."Ecological Research. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Seo, T.-K., Kishino, H., Thorne, J.L.: "Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences."Molecular Biology and Evolution.. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tatsuta, H., Mizota, K., Akimoto, S.: "Relationship between size and shape in the sexually dimorphic beetle Prosopocoilus inclinatus (Coleoptera : Lucanidae)"Biological Journal of the Linnean Society. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Watanabe, A., Goka, K., Washi: "Effects of population spatial structure on the quantity and quality of seeds set by Primula sieboldii (Primulaceae)."Plant Species Biology. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Wiegmann, B.M., Yeates, D.K., Thorne, J.L., Kishino, H.: "Time flies, a new molecular time-scale for brachyceran fly evolution without a clock."Systematic Biology. 52. 745-756 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Zhang, Z., Kishino, H.: "Genomic background drives the divergence at synonymous sites of duplicate amylase genes in Drosophila."Molecular Biology and Evolution. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Zhang, Z., Kishino, H.: "Genomic background predicts the fate of duplicated genes : evidence from the yeast genome."Genetics.. 166. 1995-1999 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 岸野洋久: "生のデータを料理する:データの科学における調査とモデル化"日本評論社. 245 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 岸野洋久, 浅井潔: "生物配列の統計"岩波書店. 264 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kishino, H., Thorne, J.L., Bruno, W.J.: "Performance of a divergence time estimation method under a probabilistic model of rate evolution."Molecular Biology and Evolution. 18. 352-361 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyakoshi, Y., Nagata, M., Sugiwakam, K, Kitada, S.: "Commercial harvest of hatchery-reared masu salmon Oncorhynchus masousmolts estimated by a coast-wide sampling program in Hokkaido, northern Japan, and the two-stage sampling schemes of landings."Fishery Science.. 67. 126-133 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyakoshi, Y., Nagata, M., Kitada, S.: "Effect of smolt size on post-release survival of hatchery-reared masu salmon Oncorhynchus masou."Fishery Science. 67. 134-137 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyakoshi, Y., Nagata, M., Takeuchi, K., Sugiwakam, K., Kitada, S.: "Effectiveness of stocking masu salmon Oncorhynchus masou fry as a mean of increasing commercial catches."Fishery Science. 67. 1184-1186 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nakamichi, R., Ukai, Y., Kishino, H.: "Resolving of closely linked quantitative trait loci with a genetic algorithm."Genetics. 158. 463-475 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tatsuta, H., Butlin, R.K.: "Amplified fragment length polymorphism for assessing genetic structure in grasshopper populations."Journal of Orthoptera Research. 10. 203-207 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Waddell, P.J., Kishino, H., Ota, R.: "A phylogenetic foundation for comparative mammalian genomics."Genome Informatics Series. 12. 141-154 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Washitani, I.: "Plant conservation ecology for management and restoration of riparian habitats of lowland Japan."Population Ecology.. 43. 189-195 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hayashi, T., Awata, T., Yasue, H.: "On the efficiency of composite interval mapping in an outbred population."Gene & Genetic Systems. 77. 209-217 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kitada, S., Tezuka, K.: "Longitudinal logbook survey designs for estimating recreational fishery catch with application to ayu (Plecoglossrrs altivelis)."Fishery Bulletin.. 100. 228-243 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Matsumura, C., Washitani, I.: "Heterostylous morph differences in pollen transfer and deposition patterns in Primula sieboldii on a visitation by a queen bumblebee, measured with a semi-natural experimental system."Plant Species Biology. 17. 1-12 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ohizumi, H., Matsuishi, T., Kishino, H.: "Winter sightings of humpback and Bryde's whales in tropical waters of western and central North Pacific."Aquatic Mammals. 28. 73-77 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Seo, T.-K., Thorne, J.L., Hasegawa, M., Kishino, H.: "A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times."Bioinfrmatics.. 18. 115-123 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Seo, T.-K., Thorne, J.L., Hasegawa, M., Kishino, H.: "Estimation of effective population size of HIV-1 within a host : A pseudo-maximum likelihood approach."Genetics.. 160. 1283-1293 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Thorne, J.L., Kishino, H.: "Divergence time and evolutionary rate estimation with multilocus data."Systematic Biology. 51. 689-702 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Waddell, P.J., Kishino, H., Ota, R.: "Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees."Genome Informatics Series. 13. 82-92 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hasegawa, M., Thorne, J.L., Kishino, H.: "Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution."Gene & Genetic Systems. 78. 267-283 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ishihama, F., Nakano, C., Ueno, S., Ajima, M., Tsumura, Y., Washitani, I.: "Seed set and gene flow patterns in an experimental population of an endangered heterostylous herb with controlled local opposite-morph density"Functional Ecology.. 17. 680-689 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nakano, C., Washitani, I.: "Variability and specialization of plant-pollinator systems in a northern maritime grassland."Ecological Research.. 18. 221-246 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Robinson, D.M., Jones, D.T., Kishino, H., Goldman, N., Thorne, J.L.: "Protein evolution with dependence among colons due to tertiary structure."Molecular Biology and Evolution. 20. 1692-1704 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okayama, Y., Nagai, M., Washitani, I.: "Testing the 'assortative mating' hypothesis on a variation maintenance mechanism for flowering time within a forest-floor population of Primula sieboldii."Plant Species Biology. 18. 1-11 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tatsuta, H., Makino, S.: "Rate of Strepsipteran Parasitization among Overwintered Females of the Hornet Vespa analis (Hymenoptera: Vespidae)."Environmental Entomology. 32. 175-179 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
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  • [Publications] Ueno, S., Tsumura, Y., Washitani, I.: "Cost-effective method to synthesize fluorescently labeled DNA size standards using cloned AFLP fragments."BioTechniques. 34. 1-3 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
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  • [Publications] Ueno, S., Washitani, I., Tsumura.Y.: "Development of microsatellile markers in Primula sieboldii E.Morren, a threatened Japanese perennial herb."Conservation Genelics.. 4. 809-811 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
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      2003 Final Research Report Summary
  • [Publications] Zhang, Z., Inomata, N., Yamazaki, Y., Kishino, H.: "Evolutionary history and mode of the amylase multigene family in Drosophila. Journal of Molecular Journal of Molecular"Evolution. 57. 702-709 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
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  • [Publications] Kitada, S., Kishino, H.: "Simultaneous detection of linkage disequilibrium and genetic differentiation of subdivided populations."Genetics. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
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  • [Publications] Miyakoshi, Y., Koyama, T., Aoyama, T., Sakakihara, S., Kitada, S: "Estimates of numbers of masu salmon caught by recreational fishermen in the coastal area off Iburi, Hokkaido, Japan."Fishery Science. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Noda, H., Muraoka, H., Washitani, I.: "Morphological and physiological acclimation responses to contrasting light and water regimes in Primula sieboldii, an endangered clonal herb in Japan."Ecological Research. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Seo, T.-K., Kishino, H., Thorne, J.L.: "Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences."Molecular Biology and Evolution. (accepted). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tatsuta, H., Mizota, K., Akimoto, S.: "Relationship between size and shape in the sexually dimorphic beetle Prosopocoilus inclinatus (Coleoptera : Lucanidae)."Biological Journal of the Linnean Society. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Watanabe, A., Goka, K., Washitani, I.: "Effects of population spatial structure on the quantity and quality of seeds set by Primula sieboldii (Primulaceae)."Plant Species Biology. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
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      2003 Final Research Report Summary
  • [Publications] Wiegmann, B.M., Yeates, D.K., Thorne, J.L., Kishino, H.: "Time flies, a new molecular time-scale for brachyceran fly evolution without a clock."Systematic Biology. 52. 745-756 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
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  • [Publications] Zhang, Z., Kishino, H.: "Genomic background drives the divergence at synonymous sites of duplicate amylase genes in Drosophila."Molecular Biology and Evolution.. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
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  • [Publications] Zhang, Z., Kishino, H.: "Genomic background predicts the fate of duplicated genes : evidence from the yeast genome."Genetics.. 166. 1995-1999 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kitada, S., Kishino, H.: "Simultaneous detection of linkage disequilibrium and genetic differentiation of subdivided populations."Genetics. (accepted). (2004)

    • Related Report
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  • [Publications] Noda, H., Muraoka, H., Washitani, I.: "Morphological and physiological acclimation responses to contrasting light and water regimes in Primula sieboldii, an endangered clonal herb in Japan."Ecological Research. (in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Seo, T.-K., Kishino, H., Thorne, J.L: "Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and dale species divergences"Molecular Biology and Evolution. (in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Tatsuta, H., Mizota, K., Akimoto, S.: "Relationship between size and shape in the sexually dimorphic beetle Prosopocoilus inclinatus (Coleoptera : Lucanidae)"Biological Journal of the Linnean Society. (in press). (2004)

    • Related Report
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  • [Publications] Watanabe, A., Goka, K., Washitani, I.: "Effects of population spatial structure on the quantity and quality of seeds set by Primula sieboldii (Primulaceae)"Plant Species Biology. (in press). (2004)

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  • [Publications] Zhang, Z., Kishono, H.: "Genomic background predicts the fate of duplicated genes : eviderrce from the yeast genome"Genetics. (in press). (2004)

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  • [Publications] 岸野洋久, 浅井潔: "生物配列の統計"岩波書店. 264 (2003)

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  • [Publications] Seo T-K., Thorne JL., Hasegawa M, Kishino H: "Estimation of Effective Population Size of HIV-1 within a Host : A Pseudo-maximum likelihood approach"Genetics. 160-4. 1283-1293 (2002)

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  • [Publications] Thorne JL, Kishino H: "Divergence time and evolutionary rate estimation with multilocus data"Systematic Biology. 51-9. 689-702 (2002)

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  • [Publications] Ueno SI, Washitani I, Tsumura Y: "Development of microsatellite markers in Primula sieboldii E. Morren, a threatened Japanese perennial herb"Conservation Genetics. (in press). (2003)

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  • [Publications] Nakano C, Washitani I: "Variability and specialization of plant-pollinator systems in a northern maritime grassland"Ecological Research. (in press). (2003)

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  • [Publications] Kitada S, Kishino H: "Empirical Bayes estimation of genetic differentiation among populations : Examining genetic effect hypotheses of hatchery fish on wild populations"In : Proccedings of the second international symposium on stock enhancement and sea ranching (Eds.K.M.Leber KM et al.), Blackwell Science, Oxford.. (in press). (2003)

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  • [Publications] Tatsuta H., Butlin RK: "Amplified fragment length polymorphism for assessing genetic structure in grasshopper populations"Journal of Orthoptera Research. 10-2. 203-207 (2002)

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  • [Publications] Kishino H., Thorne JL., Bruno WJ.: "Performance of a divergence time estimation method under a probabilistic model of rate evolution"Molecular Biology and Evolution. 18. 352-361 (2001)

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  • [Publications] Nakamichi R., Ukai Y., Kishino H.: "Resolving of closely linked quantitative trait loci with a genetic algorithm"Genetics. 158. 463-475 (2001)

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  • [Publications] Seo TK., Thorne JL., Hasegawa M., Kishino H.: "A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times"Bioinformatics. 18. 115-123 (2002)

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  • [Publications] Isagi Y., Honjo M., Washitani I.: "Development of microsatellite markers for Primula sieboldii using degenerate oligonucleotide-primed PCR-amplified DNA"Molecular Ecology Notes. 1. 22-24 (2001)

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  • [Publications] Obayashi K., Tsumura Y., Ihara-Ujino T., Niiyama K., Tanouchi H., Suyama Y., Washitani I., Lee C., Lee SL., Muhammad N.: "Genetic diversity and outcrossing rate between undisturbed and selectively logged forests of Shorea curtisii(Dipterocarpaceae) using microsatellite DNA analysis"International Journal of Plant Sciences. 163(1). 151-158 (2002)

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  • [Publications] Tatsuta H., Butlin RK.: "Amplified fragment length polymorphism for assessing genetic structure in grasshopper populations"Journal of Orthoptera Research. 10(2)(in press). (2001)

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Published: 2001-04-01   Modified: 2016-04-21  

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