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STUDY ON NOVEL REQULATORY MECHANISMA OF DNA REPAIR

Research Project

Project/Area Number 13308041
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionOSAKA UNIVERSITY

Principal Investigator

HANAOKA Fumio  OSAKA UNIVERSITY, GRAD. SCH. FRONT. BIOSCI., PROFESSOR, 大学院・生命機能研究科, 教授 (50012670)

Co-Investigator(Kenkyū-buntansha) YOKOI Masayuki  OSAKA UNIVERSITY, GRAD. SCH. FRONT. BIOSCI., RESEACH ASSOCIATE, 大学院・生命機能研究科, 助手 (00322701)
MASUTANI Chikahide  OSAKA UNIVERSITY, GRAD. SCH. FRONT. BIOSCI., RESEACH ASSOCIATE, 大学院・生命機能研究科, 助手 (40241252)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥47,320,000 (Direct Cost: ¥36,400,000、Indirect Cost: ¥10,920,000)
Fiscal Year 2003: ¥15,470,000 (Direct Cost: ¥11,900,000、Indirect Cost: ¥3,570,000)
Fiscal Year 2002: ¥15,470,000 (Direct Cost: ¥11,900,000、Indirect Cost: ¥3,570,000)
Fiscal Year 2001: ¥16,380,000 (Direct Cost: ¥12,600,000、Indirect Cost: ¥3,780,000)
Keywordsnucleotide excision repair / translesion synthesis / XPC protein / HR23B protein / xeroderma pigmentosum / thymine DNA glycosylase / DNA polymerase η / DNA polymerase τ / SUMO-1 / ユビキチン / DDB / 色素乾皮症 / APエンドヌクレアーゼ / SUMO-I
Research Abstract

In order to investigate how DNA repair systems are regulated, we analysed molecular mechanisms of nucleotide excision repair (NER) and translesion synthesis (TLS) in eukaryotic cells, and obtained the following results.
1) The XPC-HR23B protein complex, the initiator of global genome NER, was found to associate with a centrosome protein centrin 2.
2) The XPC-HR23B strongly recognized specific secondary structures of DNA, involving a single-and double-strand junction. A DNase I footprint analysis, using a looped DNA substrate, revealed that a single XPC-HR23B complex protected a distorted site in an asymmetrical manner.
3) While mHR23A KO mice showed no abnormalities, mHR23B KO mice showed impaired embryonic development and a high rate of intrauterine or neonatal death. Surviving animals display a variety of abnormalities, including retarded growth, facial dysmorphology, and male sterility.
4) XPC was found to interact with thymine DNA glycosylase (TDG) in yeast two hybrid screening. By biochemical analyses, XPC interacted with TDG not only physically but also functionally.
5) We identified two fission yeast homologs of budding yeast Rad4 and human XPC, designated Rfp4A and Rhp4B. Rhp4A was found to play roles in GGR and TCR, while Rhp4B acts as an accessory protein in GGR.
6) Human DNA polymerase η (Pol η) catalyzed relatively efficient and accurate TLS past 5R-thymineglycol and 5S-thymineglycol.
7) Both alleles of DNA polymerase τ (Pol τ) gene was found to have null mutation in 129-derived strains of mice. Overall frequency and spectrum of mutation were normal in Pol τ-deficient mice.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (31 results)

All Other

All Publications (31 results)

  • [Publications] Araki, M. et al.: "Centrosome protein centrin/caltractin 1 is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair"J.Biol.Chem.. 276. 18665-18672 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sugasawa, K. et al.: "A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex"DNA Repair. 1. 95-107 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kusumoto, R. et al.: "Translesion synthesis by human DNA polymerase η across thymine glycol lesions"Biochemistry. 41. 6090-6099 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fukumoto, Y. et al.: "Two budding yeast RAD4 homologs in fission yeast play different roles in the repair of UV-induced DNA damage"DNA Repair. 1. 833-845 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shimizu, Y. et al.: "Xeroderma pigmentosum group C protein interacts physically and functionally with thymine DNA glycosylase"EMBO J.. 22. 164-173 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 花岡 文雄: "DNA複製・修復がわかる"羊土社. 133 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Araki, M., Masutani, C., Takemura, M., Uchida, A., Sugasawa, K., Kondoh, J., Ohkuma, Y., Hanaoka, F.: "Centrosome protein centrin 2/caltractin l is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair."J. Biol. Chem.. 276. 18665-18672 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sugasawa, K., Shimizu, Y., Iwai, S., Hanaoka, F.: "A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex."DNA Repair. 1. 95-107 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kusumoto, R., Masutani, C., Iwai, S., Hanaoka,F.: "Translesion synthesis by human DNA polymerase η across thymine glycol lesions."Biochemistry. 41. 6090-6099 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fukumoto, Y., Hiyama, H., Yokoi, M., Nakaseko, Y., Yanagida, M., Hanaoka,F.: "Two budding yeast RAD4 homologs in fission yeast play different roles in the repair of UV-induced damage."DNA Repair. 1. 833-845 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shimizu, Y., Iwai, S., Hanaoka, F., Sugasawa,K.: "Xeroderma pigmentosum group C protein interacts physically and functionally with thymine DNA glycosylase."EMBO J.. 22. 164-173 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] McDonald, J.P., Frank, E.G., Plosky, B.S., Rogozin, I.B., Masutani, C., Hanaoka, F., Woodgate, R., Gearhart,P.J.: "129-derived strains of mice are deficient in DNA polymerase t and have normal immunoglobulin hypermutation."J. Exp. Med.. 198. 635-643 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] McCulloch, S.D., Kokoska, R.J., Masutani, C., Iwai, S., Hanaoka, F., Kunkel,T.A.: "Preferential cis-syn thymine dimer bypass by DNA polymerase occurs with biased fidelity."Nature. 428. 97-100 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kawada, K. et al.: "Crystal structure of the MazE/MazF complex Molecular bases of antidote-toxin recognition"Mol.Cell. 11. 875-884 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Riedl, T. et al.: "The comings and goings of nucleotide excision repair factors on damaged DNA"EMBO J. 22. 5293-5303 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] You, Z.et al.: "Thymine-rich single-stranded DNA sequences specifically activates mouse Mcm4/6/7 helicase on T-fork and bubble"EMBO J. 22. 6148-6160 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Higurashi, M. et al.: "Identification and characterization of an intermediates in the alkali degradation of (6-4)photoproduct-containing DNA"J.Biol.Chem.. 278. 51968-51973 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Fujiwara, K. et al.: "Structure of the ubiquitin-interacting motif of S5a bound to the ubiquitin-like domain of HR23B"J.Biol.Chem.. 279. 4760-4767 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kino, K. et al.: "Nucleotide excision repair of 5-fomyluracil in vitro is enhanced by the presence of mismatched bases"Biochemistry. 43. 2682-2687 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hey T., et al.: "The XPC-HR23B Complex displays high affinity and speciticity for damaged DNA in a true-eguilibrium fluorescence assay"Biochemistry. 41. 6583-6587 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Uchida A., et al.: "The carbaxy-terminal domain of the XPCprotein plays a crucial role in nucleo tide excision repair through interactions with TFIIH"DNA Repair. 1. 833-845 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Fukumoto, Y et al.: "Two budding yeast RAD4 homologs in fission yeast play differnt roles in the repair of UV-induced DNA damage"DNA Repair. 1. 833-845 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yanagi K., et al.: "Mouse geminin inhibits not only cdtl-MCM6 interactions but also a novel intrinsic Cdt1 DNA binding activity"J. Biol. Chem.. 277. 40871-40880 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Shimizu Y., et al.: "Xeroderma pigmentosum group C protein interacts physically and functionally with thymine DNA glycosylase"EMBO J.. 22. 164-173 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Janicievic A., et al.: "DNA bending by the human damage recoguition protein complex XPC-HR23B"DNA Repair. 2. 325-336 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ishikawa, T.et al.: "Mutagenic and non-mutagenic Bypass of DNA lesions by Drosophila DNA polymenases dipolη and dipole"J. Biol. Chem.. 276. 15155-15163 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Levine, R.L. et al.: "Translesion DNA synthesis catalyzed by human polη across I, N6-athenodeoxyadenosine"J. Biol. Chem.. 276. 18717-18721 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Matsuda, T. et al.: "Error rate and specificity of human and murine DNA polymeraseη"J. Mol. Biol.. 312. 335-346 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Boudsocq, F. et al.: "Sulfolobus solfataricus P2 DNA polymerase IV(Dpo4): an archaeal DinB-like DNA polymenase with lesion-bypass properties akin to aukaryotic polη"Nucleic Acids Res.. 29. 4607-4616 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kuraoka, I. et al.: "Oxygen free-radical damage to DNA polymenas η and resistanteto exonaclease action at cyclopurine deoxynucleaside residues"J. Biol. Chem.. 276. 49283-49288 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Broughton, B.C. et al.: "Molecular analysis of mutations in DNA polymenase η in xeroderma pigmentosum-variant residues"Proc. Natl. acad. Sci. USA. 99. 815-820 (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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