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Direct Observation of DNA at a Molecular Scale Level by Three-Dimensional Fourier Filtering Method

Research Project

Project/Area Number 13450036
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied physics, general
Research InstitutionOsaka University

Principal Investigator

TAKAI Yoshizo  Osaka University, Graduate School of Engineering, Professor, 大学院・工学研究科, 教授 (30236179)

Co-Investigator(Kenkyū-buntansha) NAGATOMI Takaharu  Osaka University, Graduate School of Engineering, Assistant Professor, 工学研究科, 助手 (90314369)
KIMURA Yoshihide  Osaka University, Graduate School of Engineering, Associate Professor, 大学院・工学研究科, 助教授 (70221215)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥10,200,000 (Direct Cost: ¥10,200,000)
Fiscal Year 2002: ¥1,900,000 (Direct Cost: ¥1,900,000)
Fiscal Year 2001: ¥8,300,000 (Direct Cost: ¥8,300,000)
KeywordsTransmission Electron Microscope / DNA / Molecular structure / Bio Medical Sample / Aberration-Free observation / Phase Electron Microscopy / Spherical aberration Correction / Low electron dose
Research Abstract

High-resolution transmission electron microscopy (HRTEM), at present, enables atomic level observation. However, the resulting image do not always show atomic structures precisely. Because, the image of the atomic structure is often distorted by multiple scattering of electron waves in the crystal and by aberrations ill the image-forming lenses. To solve the latter requirement, we proposed a new method called three-dimensional Fourier filtering method (3D-FFM), which enables us to observe spherical aberration-free phase and amplitude images separately. In the processing, a filtering shape function extracts only the linear component that appears -on a so-called Ewald sphere and the function works well for improving the S/N ratio by excluding the non-linear components and, quantum noises of the image, which effectively works for the biological sample observation under au extremely law electron dose condition
In this study, the three-dimensional Fourier filtering method (3D FFM) has been successfully applied to observe a deoxyribonucleic acid (DNA) in the molecular scale level. To avoid the deterioration of the image quality cased by the contrast of the supporting film, a holey nano-sized gold grid was used and the DNA that was bridged over on the holey grid by a freeze drying method was observed. The processing made it possible to observe a spherical aberration-free phase image of the DNA with high contrast at in-focus condition. In the phase image of the DNA, periodic fine structures with intervals of 3.4-4.0 A, which seem to correspond to the distance between adjacent base pairs, were partially observed, though it seems to be heavily damaged. If we can reconstruct the DNA image by smaller dose of the electron, more,detail structures of the DNA will be, resolved, which is now under investigation

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] T.Kawasaki, et al.: "Phase Reconstruction with Simultaneous Correction of Spherical and Astigmatic Aberrations by Three-Dimensional Fourier Filtering Method"Surf.Interface Anal.. 35. 51-54 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Kawasaki, et al.: "Principles of Phase Reconstruction with Aberration Correction using Three-dimensional Fourier Filtering Method"Proc.of Microscopy and Microanalysis 2002(M&M 2002). 1. 474-475 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Takai, et al.: "Single Atom Dynamism Observed by Real-Time Defocus Image Modulation Processing Electron Microscope"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 203-204 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Kawasaki, et al.: "Quantitative Analysis of Phase Image Reconstructed by Three-Dimensional Fourier Filtering Method"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 435-436 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] K.Nishikata, et al.: "Dynamic Observation of Surface Atom Movement Using High-Speed Image Processing CCD Video Camera"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 363-364 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Takai, et al.: "Dynamic Observation of an Atom-Sized Gold Wire by Real-Time Defocus Image Modulation Processing Electron Microscope"Proc.of Microscopy and Microanalysis 2002 (M&M 2002). 1. 482-483 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Kawasaki, Y.Takai, R.Shimizu: "Distorted Surface And Interface Structures of Catalytic Gold Nanoparticles Observed by Spherical Aberration-Free Electron Microscopy"Appl.Phys.Lett.. 79, No.21. 3509-3511 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Takai, T.Kawasaki, Y.Kimura, T.Ikuta, R.Shimizu: "Dynamic Observation of An Atom Size Gold Wire by Phase Electron Microscope"Phys.Rev.Lett.. 87, No.3. 106105-1-106105-4 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Takai et al.: "Single Atom Dynamism Observed by Real-Time Defocus-Image Modulation Processing Electron Microscope"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 203-204 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Kawasaki et al.: "Quantitative Analysis of Phase Image Reconstructed by Three-Dimensional Fourier Filtering method"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 435-436 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] K.Nishikata et al.: "Dynamic Observation of Surface Atom Movement Using High-Speed Image Processing CCD Video Camera"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 363-364 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Kawasaki et al.: "Principles of Phase Reconstruction with Aberration Correction Using Three-Dimensional Fourier Filtering Method"Proc.of Microscopy and Microanalysis 2002,(M&M 2002). 1. 474-475 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Takai et al.: "Dynamic Observation of an Atom-Sized Gold Wire by Real-Time Defocus Image Modulation Processing Electron Microscope"Proc.of Microscopy and Microanalysis 2002,(M&M 2002). 1. 482-483 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Kawasaki et al.: "Phase Reconstruction with Simultaneous Correction of Spherical and Astigmatic Aberrations by Three-Dimensional Fourier Filtering Method"Surf.Interface Anal.. 35. 51-54 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Ohtomo et al.: "Atomic Level Characterization of Ultrathin Flat Cobalt Disilicide Film with Three Crystalline Domains"J. Appl. Phys.. 91. 9663-9666 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] J.Kato et al.: "Development of Ultra High Vacuum Transmission Electron Microscope for In Situ Observation of Silicides And Island Formation on Silicon Surface at High Temperatures by Reflection And Transmission Electron Microscope"J. Surf. Anal.. 9. 150-159 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Kawasaki et al.: "Phase Reconstruction with Simultaneous Correction of Spherical and Astigmatic Aberrations by Three-Dimensional Fourier Filtering Method"Surf. Interface Anal.. 35. 51-54 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Kawasaki et al.: "Principles of Phase Reconstruction with Aberration Correction Using Three-Dimensional Fourier Filtering Method"Proc. of Microscopy and Microanalysis 2002 (M&M 2002). 1. 474-475 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Takai et al.: "Single Atom Dynamism Observed by Real-Time Defocus-Image Modulation Processing Electron Microscope"Proc. of 15th International Congress on Electron Microscopy (ICEM15). 3. 203-204 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Kawasaki et al.: "Quantitative Analysis of Phase Image Reconstructed by Three-Dimensional Fourier Filtering Method"Proc. of 15th International Congress on Electron Microscopy (ICEM15). 3. 435-436 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] K.Nishikata et al.: "Dynamic Observation of Surface Atom Movement Using High-Speed Image Processing CCD Video Camera"Proc. of 15th International Congress on Electron Microscopy (ICEM15). 3. 363-364 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Takai et al.: "Dynamic Observation of an Atom-Sized Gold Wire by Real-Time Defocus Image Modulation Processing Electron Microscope"Proc. of Microscopy and Microanalysis 2002 (M&M 2002). 1. 482-483 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Kawasaki et al.: "Wave field restoration using three-dimensional Fourier filtering method"Ultramicroscopy. 90. 47-59 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Kawasaki et al.: "Nano-area electron diffraction pattern reconstructed from three-dimensional Fourier Spectrum"J. Electron Microsc.. 50. 405-412 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Takai et al.: "Dynamic observation of an atom size gold wire by phase electron microscope"Phys. Rev. Lett.. 87. 106105,1-106105,4 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Kawasaki et al.: "Distorted surface and interface structures of catalytic gold nanoparticles observed by spherical aberration-free phase electron microscopy"J. Appl. Phys.. 79. 3509-3511 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Kawasaki et al.: "Phase Reconstruction with Aberration Correction by Three-dimensional Fourier Filtering Method"3rd International Symposium on Atomic Level Characterizations for New Materials and Devices '01. 1. 45 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Kawasaki et al.: "Fourier Analysis of HRTEM image deterioration caused by mechanical vibration"J. Electron Microsc.. 50. 413-416 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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