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The genetic and biochemical research of lipid biosynthesis in archaea

Research Project

Project/Area Number 13450338
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物・生体工学
Research InstitutionTOHOKU UNIVERSITY

Principal Investigator

NISHINO Tokuzo  Tohoku University, Graduate School of Engineering, Professor, 大学院・工学研究科, 教授 (90005827)

Co-Investigator(Kenkyū-buntansha) HEMMI Hisashi  Tohoku University, Graduate School of Engineering, Research Associate, 大学院・工学研究科, 助手 (60302189)
NAKAYAMA Toru  Tohoku University, Graduate School of Engineering, Assistant Professor, 大学院・工学研究科, 助教授 (80268523)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥15,500,000 (Direct Cost: ¥15,500,000)
Fiscal Year 2002: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 2001: ¥14,000,000 (Direct Cost: ¥14,000,000)
KeywordsArchaea / isoprenoid / prenyl tronsferase / prenyl quinone / molecular evolution / carotenoid / 糖キャリア脂質
Research Abstract

1. We Succeeded in isolating the gene of hexaprenyl diphosphate synthase, which is considered to produce the precursor of the C30 side-chain of caldariellaquinone, from a thermoacidophilic archaeon Sulfolobus solfataticus based on homology searching from its whole-genomesequence. The gene was exogenously expressed in Escherichia coli, and the recombinant enzyme was purified and characterized. In consequence, it was proved to be the homomultimeric-type enzyme, which deffers from well-studied bacterial mudium-chain prenyl diphosphate synthases that have heterodimeric structures. Moreover, as the result of the phylogenetic analysis of the sequences of various prenyl diphosphate synthases, the archaeal enzyme was suggested to be closely related with eukaryotic short-chain enzymes, not with other medium-and long-chain enzymes; This idea was also supported by the result of a mutagenic study, in which partical sequences of prenyl diphosphate synthases from other organisms were site- derectedl … More y introduced in the srchaeal hexaprenyl diphosphate synthase.
2. The gene of isopentenyl diphosphate isomerase was isolated from Sulfolobus shibatae and expressed in E. coli. This enzyme is important for biosynthesis of isoprenoid compounds in archaea because it catalyzes the first step of their biosynthetic pathways. The enzyme was proved to have novel properties; for axample, it shows co-enzyme requirement largely different with those of known isopentenyl hiphosphate synthases. Besides, the enzyme was suggested to have structural similarity with some types of oxidoreductases.
3. We isolated the genes of various enzymes that catalyze the reactions of isoprenoid biosynthesis and proved their functions by expressing them in the cells of E. coli. The enzyme are thought to be valuable to investigate the evolutional route of each group of enzyes in which they are contained, because they have uniwue characteristics. For example, lycopene cyclase from S. solfataricus was proved to have the fusion-type structure specific for archaeal ones. Less

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] M.Nagaki et al.: "Artificial substrates of medium-chain elongation enzymes, hexaprenyl-and heptaprenyl diphosphate synthases"Bioorg. Med. Chem. Lett.. 11. 2157-2159 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Hemmi et al.: "Novel medium-chain prenyl diphosphate synthase from the thermoacidophilic archaeon sulfolobus solfataricus"J. Bacteriol. 184. 615-620 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Nagaki et al.: "Substrate specificity of thermostable farnesyl diphosphate synthase with respect to 4-alkyl group homologs of isopentenyl diphosphate"J. Mol. Catal. B: Enzym. 17. 81-89 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Hemml et al.: "Change of product specificity of hexaprenyl diphosphate synthase from sulfolobus solfataricus by introducing mimetic mutations"Biochem. Biophys. Res. Commun.. 297. 1096-1101 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Hemml et al.: "Novel sugar phosphotransferase system applicable to the efficient labeling of the compounds synthesyzed via the non-mevalonate pathway"J. Biosci. Bioeng.. 93. 515-518 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Nagaki et al.: "Substrate specificities of medium-prenyl chain elongating enzymes, hexaprenyl-and heptaprenyl diphosphate synthases"J. Mol. Catal. B: Enzym.. 22. 97-103 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Maki et al.: "Usefulness of prenyltransferase for organic synthesis: Carbon-carbon bond forming reactions by prerlyltransferases and their mutated enzyrnes"J. Syn. Org. Chem. Japan. 60. 783-793 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] E-i.Fukusaki et al.: "Introduction of the archaebacterial geranylgeranyl pyrophosphate synthase gene into Clamydomonas reinhardtii chloroplast"J. Biosci. Bioeng.. 95. 283-287 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Maki et al.: "Dramatic changes in the substrate specificities of prenyltransferase by a single amino acid substitution"J. Mol. Catal. B: Enzym.. 19. 431-436 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M. Nagaki, K. Kimura, H. Kimura, Y. Maki, E. Goto, T. Nishino, and T. Koyama: "Artificial substrates of medium-chain elongation enzymes, hexaprenyl and heptaprenyl diphosphate synhtases"Bioorg. Med. Chem. Lett.. 11. 2157-2159 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Hemmi, S. Ikejiri, S. Yamashita, and T. Nishino: "Novel medium-chain prenyl hiphosphate synthase from the thermoacidophilic archaeon Sulfolobus solfataricus"J. Bacteriol.. 184. 615-620 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M. Nagaki, H. Yamamoto, A. Takahashi, Y. Maki, J. Itabashi, T. Nishino, and T. Koyama: "Substrate specificity od thermostable famesyl diphosphate synthase with respect to 4-alkyl group homologs of isopentenyl diphosphate"J. Mol. Catal. B: Enzym.. 17. 81-89 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Hemmi, M. Noike, T. Nakayama, and Y. Nishino: "Change of product specificity of hexaprenyl diphosphate synthase from Sulfolobus solfataricus by introducing mimetic mutations"Biochem. Biophy. Res. Commun.. 297. 1096-1101 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Hemmi, S. Yamashita, T. Nakayama, and T. Nishino: "Novel suger phosphotransferase system applicable to the efficient labeling of the compounds synthesized via the non- mevalonate pathway in Escherichia coli"J. Biosci. Bioeng.. 93. 515-518 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M. Nagaki, K. Kuwahara, K. Kimura, J. Kawakami, Y. Maki, S. Ito, N. Morita, T. Nishino, and T. Koyama: "Substrate specificities of medium-prenyl chain elongating enzymes, hexaprenyl and heptaprenyl diphosphate synthases"J. Mol. Catal. B: Enz.. 22. 97-103 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y. Maki, M. Nagaki, T. Nishino, and T. Koyama: "Usefulness of prenyltransferase for organic synthesis: Carbon-carbon bond forming reactions by prenyltransferases and their mutated enzymes"J. Syn. Org. Chem. Japan. 60. 783-793 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] E-l. Fukusaki, T. Nishikawa, K. Kato, A. Shinmyo, H. Hemmi, T. Nishino, and A. Kobayashi: "Introduction of the archaebacterial geranylgeranyl pyrophosphate aynthase gene into clamydomonas reinhardtii chloroplast"J. Biosci. Bioeng.. 95. 283-287 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y. Maki, M. Komabayashi, Y. Goto, N. Ohya, H. Hemmi, K. Hirooka, T. Nishino, and T. Koyama: "Dramatic changes in the substrate specificities of prenyltransferase by a single amino acid substitution"J. Mol. Catal. B: Enzym.. 19. 431-436 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Hemmi et al.: "Change of product specificity of hexapronyl diphosphate synthase from sulfdobus solfataricus by introducing mimetic mutations"Biochem. Biophy. Res. Commun.. 297(5). 1096-1101 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Maki et al.: "Dramatic changes in the substrate specificities of prenyl transferase by a single amino acid substitution"J. Md. Catal. B : Enzym.. 19-20. 431-436 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Hemmi et al.: "Novel sugar phospho transfrase system applicable to the efficient labelling of the compounds synthesized via the non-mevalorate pathway in Escherichia coli"J. Biosci. Bioeng.. 93(5). 515-518 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Nagaki et al.: "Substrate specificity of themostable farresyl diphosphate synthase with respect to 4-alkyl group homologs of isopentenyl diphosphate"J. Mol. Catal. B : Enzym.. 17(2). 81-89 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Hemmi et al.: "Novel medium-chain prenyl diphosphate synthase from the thermoacidophilic archaeon Sulfolobus Solfataricus"J. Bacteriol.. 184. 612-615 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Nagaki et al.: "Artificial substrates of medium-chain elongating enzymes, hexaprenyl and heptaprenyl diphosphate synthases"Bioorg. Med. Chem. Lett.. 11(16). 2157-2159 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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