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Molecular genetic analysis of the self-incompatibility locus in a wild species of sweet potato

Research Project

Project/Area Number 13460003
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionMie University

Principal Investigator

KOWYAMA Yasuo  Mie University, Faculty of Bioresources, Professor, 生物資源学部, 教授 (80024579)

Co-Investigator(Kenkyū-buntansha) TSUCHIYA Tohru  Mie University, Life Science Research Center, Associate Professor, 生命科学研究支援センター, 助教授 (30293806)
KAKEDA Katsuyuki  Mie University, Faculty of Bioresources, Associate Professor, 生物資源学部, 助教授 (50221867)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥14,600,000 (Direct Cost: ¥14,600,000)
Fiscal Year 2003: ¥4,700,000 (Direct Cost: ¥4,700,000)
Fiscal Year 2002: ¥4,700,000 (Direct Cost: ¥4,700,000)
Fiscal Year 2001: ¥5,200,000 (Direct Cost: ¥5,200,000)
Keywordsipomoea trifida / self-incompatibility / genome analysis / molecular genetics / S-locus / 遺伝子地図 / BACライブラリー
Research Abstract

Self-incompatibility (SI) in flowering plants is an elaborate genetic system that prevents self-fertilization and thereby promotes out-crossing to maintain generic diversity within a species. In a plant family, Convolvulaceae, several species of the genus ipomoea possess a sporophytic type of SI that causes a complete failure of pollen germination on the stigma surface after self-pollination. The SI system of Ipomoea is regulated by a single multiallelic locus called the S-locus. To identify the S-locus genes in Ipomoea, we used a positional cloning strategy based on a fine linkage map of DNA markers. Several genomic clones covering the S-locus were screened from bacterial artificial chromosome (BAC), λ and fosmid libraries that were constructed in the present study. Using the terminal end sequences of these clones, the S-locus region was further delimited within 0.6 cM, spanning ca. 300kb. Remarkable suppression of genetic recombination was detected in the S-locus region. From sequence analysis of the 313-kp region, 43 open reading frames (ORFs), many repetitive sequences and 5 transposable elements were predicted. Northern blot analysis of mRNAs isolated from reproductive and vegetative organs showed that five and four genes were specifically expressed in the stigma and anther-pollen, respectively. The present study made clear that these reproductive specific genes showed no homologies with the SI genes reported to date from other plants and suggests that a unique molecular mechanism is involved in the SI system of Convolvulaceae family.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (31 results)

All Other

All Publications (31 results)

  • [Publications] Kondo, K: "Cultivated tomato has defects in both S-RNase and HT genes required for stylar function of self-incompatibility."Plant Journal. 29. 627-636 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kondo, K.: "Insights into the evolution of self-compatibility in Lycopersicon from a study of stylar factors."Plant Journal. 30. 143-153 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] O'Brien, M.: "Molecular analysis of the stylar-expressed Solanum chachoense small asparagine-rich protein family related to the HT modifier."Plant Journal. 32. 985-996 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tomita, R.N.: "Genetic mapping of AFLP/AMF-derived DNA markers in the vicinity of the self-incompatibility locus in Ipomoea trifida."Sexual Plant Reproduction. 16. 265-272 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tomita, R.N.: "Molecular characterization of a 313-kb genomic region containing the self-incompatibility locus of Ipomoea trifida, a diploid ralative of sweet potato."Breeding Science. 54. 165-175 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 日向康吉: "植物育種学各論"文永堂. 330 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kondo, K., et al.: "Cultivated tomato has defects in both S-RNase and HT genes required for stylar function of self-incompatibility."Plant Journal. 29. 627-636 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kondo, K., et al.: "Insights into the evolution of self-compatibility in Lycopersicon from a study of stylar factors."Plant Journal. 30. 143-153 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] O'Brien, M., et al.: "Molecular analysis of the stylar-expressed Solanum chachoense small asparagine-rich protein family related to the HT modifier."Plant Journal. 32. 985-996 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tomita, R.N., et al.: "Genetic mapping of AFLP/AMF-derived DNA markers in the vicinity of the self-incompatibility locus in Ipomoea trifida."Sexual Plant Reproduction. 16. 265-272 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tomita, R.N., et al.: "Molecular characterization of a 313-kb genomic region containing the self-incompatibility locus of Ipomoea trifida, a diploid ralateive ralative of sweet potato"Breeding Science. 54. 165-175 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hinata, K., et al.: "Plant Breeding for Individual crop Plants"Bun-eido publishing Co.Ltd.. 330 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tomita, R.N.: "Genetic mapping of AFLP/AMF-derived DNA markers in the vicinity of the self-incompatibility locus in Ipomoea trifida."Sexual Plant Reproduction. 16. 265-272 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Tomita, R.N.: "Molecular characterization of a 313-kb genomic region containing the self-incompatibility locus of Ipomoea trifida, a diploid ralative of sweet potato."Breeding Science. 54(印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kowyama, Y.: "Map-based cloning of S-locus genes in a wild diploid species of sweet potato, Ipomoea trifida."Abstract of the 7th International Congress of Plant Molecular Biology. 434 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] O'Brien, M.: "The Solanum chacoense HT modifier of gametophytic self-incompatibility works through delayed abscission of the floral organs."Abstract of the 7th International Congress of Plant Molecular Biology. 435 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kakeda, K.: "Two-locus self-incompatibility in wild barley, Hordeum bulbosum."Abstract of International Symposium on Plant Self-incompatibility. 17 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Tsuchiya, T.: "Molecular analysis of the S-locus region of Ipomoea trifida."Abstract of International Symposium on Plant Self-incompatibility. 19 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 日向康吉: "植物育種学各論"文永堂. 330 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kondo, K.: "Cultivated tomato has defects in both S-RNase and HT genes required for stylar function of self-incompatibility"The Plant Journal. 29(5). 627-636 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kondo, K.: "Insights into the evolution of self-compatibility in Lycopersicon from a study of stylar factors"The Plant Journal. 30(2). 143-153 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] O'Brien, M.: "Molecular analysis of the stylar-expressed Solanum chachoense small asparagine-rich protein family related to the HT modifier"The Plant Journal. 32(6). 985-996 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kowyama, Y.: "Evolutionary aspect of self-incompatibility in the genus Lycopersicon"Abstract of 18th International Congress on Sexual Plant Reproduction. 81 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Tsuchiya, T.: "Sexual reproductive organ-specific genes : Surveying with cDNA microarray"Abstract of the 8th International Congress of Ecology. 58 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 掛田克行: "Agrobacteriumによるサツマイモ野生二倍体種の形質転換"育種学研究. 4(1)(印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kowyama Y.: "Self-incompatibility reactions and map-based cloning of self-incompatibility locus in a wild sweet potato,Ipomoea trifida"Abstract of 17th International Conference on Plant Growth Substances. 160 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Tomita, R.N.: "サツマイモ野生種におけるS遺伝子座周辺のBACクローンのスクリーニングと解析"育種学研究. 3(1). 213 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 掛田克行: "サツマイモ野生種からのARC1(Arm Repeat Containing)相同遺伝子の単離と解析"育種学研究. 3(1). 212 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 渡瀬智子: "サツマイモ野生種の自家不和合性遺伝子座近傍に座乗する遺伝子の探索"育種学研究. 3(2). 198 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kondo, K.: "Cultivated tomato has defects in both S-RNase and HT genes required for stylar function of self-incompatibility"The Plant Journal. 29(5)(印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kondo, K.: "Insights into the evolution of self-compatibility in Lycopersicon from a study of stylar Factors"The Plant Journal. 29(5)(印刷中). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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