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Construction of gene-databank based on the analysis of genetic variation of populations of Quercus see. Prinus in Japan.

Research Project

Project/Area Number 13460069
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 林学
Research InstitutionEhime University

Principal Investigator

HARADA Ko  Ehime University, Faculty of Agriculture, Associate Professor, 農学部, 教授 (40150396)

Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥13,400,000 (Direct Cost: ¥13,400,000)
Fiscal Year 2003: ¥1,600,000 (Direct Cost: ¥1,600,000)
Fiscal Year 2002: ¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 2001: ¥9,300,000 (Direct Cost: ¥9,300,000)
KeywordsQuercus mongolica / Quercus serrata / gene-date bank / chloroplast DNA / haplotype / AFLP / genetic variation / methionine synthase / 葉緑体 / 地理的構造 / データベース
Research Abstract

Broad leaf deciduous forest is important genetic resources in Japan. This study aimed at clarifying the genetic structure of four Japanese oak species belonging to the genus Quercus, subsection Prinus which are important componets of above mentioned forest. DMA materials and the data obtained in this study were integrated into a gene-data-bank to serve for utilizing genetic information.
In this study we collected 550 Q. mongolica, 80 Q. serrata, 40 Q. aliena and 35 Q. dentata samples from all over Japan and some places in China, Korea, and Russia. We also collected 488 samples of Fagus crenata. We determined sequences of a total of 5,000 bp regions of chloroplast DNA and found 11 haplotypes in the Quercus species. All the species possessed common haplotypes at the same locations, suggesting introgression had occurred among the species. These haplotypes were devided into two main groups in the northeast and the southwest part of Japan. Haplotypes found in the foreign samples indicated that those in northeast migrated via Sakhalin and those in southwest migrated via the Korean Peninsula during the past glacial ages. This finding suggests that these two groups experienced different adaptive process. In order lo confirm this, we cloned methionine synthase gene from the representative haplolypes and found two largely differentiated genes, α and β. We tested neutrality of these genes and found some evidence that different type of natural selection had operated on these genes depend on the location where genes arc found.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (16 results)

All Other

All Publications (16 results)

  • [Publications] Okaura, T., Harada, K.: "Phylogeographical structure revealed by chloroplast DNA variation in Japanese beech (Fagus crenata Blume)."Heredity. 88. 322-329 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kamiya, K., Harada, K., Clyde, M.M., Lariff, A.M.: "Genetic variation of Trigonobalanus verticillata, a primitive species of fagaceae, in Malaysia revealed by chloroplast sequences and AFLP markers."Genes and Genetic Systems. 77. 177-186 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okaura, T., Harada, K., Ubukata, M.: "Genetic structure of Japanese oaks revealed by chloroplast DNA variation."Proc.International Workshop of BIO-REFOR. 94-98 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Harada, K., Tamaki, K., Kamiya, K., Takechi, Y.: "Pollen morphology observed by scanning electron microscopy on Japanese Fagaceae species and molecular phylogeny."Bulletin of the Ehime University Forest. 42. 119 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okaura, T., Harada, K.: "Phylogeographical structure revealed by chloroplast DNA variation in Japanese Beech (Fagus crenata Blume)."Heredity. 88. 322-329 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kamiya, K., Harada, Clyde, M.M., Latiff, A.M.: "Genetic variation of Trigonobalanus verticillata, a primitive species of fagaceae, in Malaysia revealed by chloroplast sequences and AFLP markers."Genes and Genetic Systems. 77. 177-186 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okaura, T., Harada, K., Ubukata, M.: "Genetic structure of Japanese oaks revealed by chloroplast DNA variation."Proc. International Workshop of BIO-REFOR. Seoul, Korea. 94-98 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hamda, K., Tamaki, K., Kamiya, K., Tekechi, Y.: "Pollen morphology observed by scanning electron microscopy on Japanese Fagaceae species and molecular phylogeny."Bulletin of the Ehime University Forest. No.42. 1-19 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 岡浦貴富, 原田光, 生方正俊: "日本列島およびその周辺域のコナラ節4樹種の葉緑体DNAにもとづく遺伝的構造"第114回日本林学会大会学術講演集. 363 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 原田光, 玉置教司, 上谷浩一, 武智裕里: "日本産ブナ科樹木花粉の電子顕微鏡による形態と分子進化"愛媛大学農学部演習林報告. No.42. 1-19 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Harada, K., Okaura, T., Ubukata, M.: "Geographical structure and late Quaternary history of Japanese oaks (Quercus sub Quercus Fagaceae) revealed by cpDNA variation"XIX International Congress of Genetics, Abstructs. 156 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Okaura, T., Harada, K.: "Phylogeographical structure revealed by chloroplast DNA variation in Japanese beech(Fagus crenata Blume)"Heredity. 88. 322-329 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kamiya, K., Harada, K., Clyde, M.M., Mohamed, A.L.: "Genetic variation of Trigonobalanus verticillata, a primitive species of Fagaceae, in Malaysia revealed by chloroplast sequences and AFLP markers"Genes Genet. Syst.. 77. 177-186 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Lopez, G.G., Kamiya, K., Harada, K.: "Phylogenetic relationships of Diploxylon pines (subgenus pines)based on plastid sequence date"Int. J. Plant Sci.. 163. 737-747 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Okaura, T., Harada, K., Ubukata, M.: "Genetic structure of Japanese oaks revealed by chloroplast DNA variation"In : Proc.Int.Nat.Workshop BIO-RIFOR.Seoul, Korea. Oct.8-12. 94-98 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Okaura, K.Harada: "Phylogeographical structure revealed by chloroplast DNA varation in Japanese Beech (Fagus crenata Blume)"Heredity. 89(in press). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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