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Genetic study on the three color variations in sea cucumber, Stichopus japonicus

Research Project

Project/Area Number 13460080
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field General fisheries
Research InstitutionTohoku University

Principal Investigator

KIJIMA Akihiro  Tohoku University, Graduate School of Agricultural Science, Professor, 大学院・農学研究科, 教授 (50161451)

Co-Investigator(Kenkyū-buntansha) OSADA Makoto  Tohoku University, Graduate School of Agricultural Science, Associate Professor, 大学院・農学研究科, 助教授 (30177208)
荒井 永平  東北大学, 大学院・農学研究科, 助手 (10134032)
Project Period (FY) 2001 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥12,800,000 (Direct Cost: ¥12,800,000)
Fiscal Year 2004: ¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 2003: ¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2002: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2001: ¥3,600,000 (Direct Cost: ¥3,600,000)
Keywordsseacucumber / Stichopus japunicus / color variant / isozymes / microsatellite DNA / reproductive isolation / population structure / L^*a^*b^* / メンデル遺伝 / アカナマコ / 交配実験 / マイクロサテライトDNA / 遺伝支配 / 地理的変異 / 集団遺伝学 / 色彩変異型 / DNA多型 / 色彩の定量化 / 染色体
Research Abstract

There are three color variant types, namely red-type, green-type and black type. These types are including in one species, but their habitat and breeding seasons are not always same. However few studies regarding to their color variation, ecological characteristics, growth, etc., have been carried out because of their biological characteristics. Japanese sea cucumber is familiar species but strange species scientifically.
The aims of the present study are to evaluate the color variation quantitatively and qualitatively, to estimate genetic variability and divergence using isozyme marker genes, and to elucidate the fact of reproductive isolation using microsatellite DNA marker genes, which are developed by the present study.
Following results are obtained ;
(1)Discontinuous distribution and clear difference in the color system"L^*a^*b^* was observed between the red-type and green-type, and between the red-type and black-type, but not between green-type and black type.
(2)Different pigment w … More as also observed between the red-type and green-type, and between the red-type and black type, but not between green-type and black-type.
(3)High genetic variability of isozyme genes was observed in the three types.
(4)Significant differences in allele frequencies were observed between the red-type and green-type, and between the red-type and black-type, but not between green-type and black-type.
(5)Twenty microsatellite markers were developed and their genetic control was elucidate by mating experiments.
(6)Using the above microsatellite marker genes, significant differences were detected between the red-type and green-type, and between the red-type and black type, but not between green type and black-type.
From the above results, the red-type should be distinguished from the other two types, and the red-type should be recognized as new subspecies. On the other side, in any of color measurements, pigmentation, isozyme genes and microsatellite marker genes, no difference was observed between green-type and black-type. It could be interpreted that the two types are included in the same species and the same population in the same area. Less

Report

(5 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (16 results)

All 2005 2003 2002 2001 Other

All Journal Article (10 results) Publications (6 results)

  • [Journal Article] Isolation and characterization of twenty microsatellite loci in the Japanese sea cucumber (Stichopus japonicus)2005

    • Author(s)
      Kanno, M., Q.Li, A.Kijima
    • Journal Title

      Marine Biotechnology 7(in press)

    • NAID

      10017164334

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Isolation and characterization of twenty micrfosatellite loci in the Japanese seacucumber (Stichopus japonicus).2005

    • Author(s)
      Kanno, M., Q.Li, A.Kijima
    • Journal Title

      Marine Biotechnology 7(in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Isolation and characterization of twenty microsatellite loci in the Japanese seacucumber(Stichopus japonicus)2005

    • Author(s)
      Kanno, M., Q.Li, A.Kijima
    • Journal Title

      Marine Biotechnology 7(in press)

    • NAID

      10017164334

    • Related Report
      2004 Annual Research Report
  • [Journal Article] マナマコの色彩変異に関する研究について(総説)2003

    • Author(s)
      菅野愛美, 木島明博
    • Journal Title

      複合生態フィールド教育研究センター報告 19

      Pages: 33-37

    • NAID

      110004629049

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Genetic differentiation among three color variants of Japanese sea cucumber Stichopus japonicus.2003

    • Author(s)
      Kan-no, M., A.Kijima
    • Journal Title

      Fisheries Science 69

      Pages: 806-812

    • NAID

      10011154223

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Studies on color variations of Japanese sea cucumber, Stichopus japonicus : a review.2003

    • Author(s)
      Kanno, M., A.Kijima
    • Journal Title

      Bull.Integrated Field Science Center 19

      Pages: 33-37

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] マナマコのおける色彩変異の定量的定性的評価2002

    • Author(s)
      菅野愛美, 木島明博
    • Journal Title

      水産増殖 50(1)

      Pages: 63-69

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Quantitative and qualitative evaluation on the color variation of the Japanese sea cucumber Stichopus japonicus.2002

    • Author(s)
      Kan-no, M., A.Kijima
    • Journal Title

      SUISANZOSHOKU 50(1)

      Pages: 63-69

    • NAID

      10008020254

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] High genetic variability of isozymes in Japanese sea cucumber Stichopus japonica.2001

    • Author(s)
      Kan-no M., A.Kijima
    • Journal Title

      Fish Genetics and Breeding Science 31

      Pages: 81-86

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] High genetic variability of isozymes in Japanese sea cucumber Stichopus japonicus.2001

    • Author(s)
      Kan-no M., A.Kijima
    • Journal Title

      Fish Genet.Breed.Sci. 31

      Pages: 81-86

    • NAID

      40004763066

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Kan-no, M., A.Kijima: "Genetic differentiation among three color variaants of Japanese sea cucumber Stichopus japonicus"Fisheries Science. 69. 806-812 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 菅野愛美, 木島明博: "マナマコの色彩変異に関する研究について"複合生態フィールド教育研究センター報告. 19. 33-37 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kan-no, M., A.Kijima: "High Genetic Variability of Isozymes in Stichopus japonicus"Fish Genet. Breed. Sci.. 31. 81-86 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 菅野愛美, 木島明博: "マナマコの色彩変異型3型における色彩の定量的定性的評価"水産増殖. 50. 63-69 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kan-no, M., A.Kijima: "High Genetic Variability of Isozymes in Stichopus japonicus"Fish Genet. Breed. Sci.. 31 (印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 菅野愛美, 木島明博: "マナマコの色彩変異型3型における色彩の定量的定性的評価"水産増殖. 50 (印刷中). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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