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APPLICATION OF GENOME ANALYSIS BY AFLP FINGERPRINT TO CATTLE BREEDING

Research Project

Project/Area Number 13460126
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied animal science
Research InstitutionKOBE UNIVERSITY

Principal Investigator

TSUJI Soichi  KOBE UNIV. AGRICULTURE PROFESSOR, 農学部, 教授 (10031220)

Co-Investigator(Kenkyū-buntansha) MANNEN Hideyuki  KOBE UNIV. AGRICULTURE ASSOCIATE PROFESSOR, 農学部, 助教授 (20263395)
MUKAI Fumio  KOBE UNIV. AGRICULTURE PROFESSOR, 農学部, 教授 (50093323)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥15,300,000 (Direct Cost: ¥15,300,000)
Fiscal Year 2002: ¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 2001: ¥13,600,000 (Direct Cost: ¥13,600,000)
KeywordsJAPANESE BLACK / MARKER ASSISTED SELECTION / AFLP / BREEDING VALUE / IMPROVEMENT OF REPRODUCTIVE COWS / BREED IDENTIFICATION / SNPs / 牛の品種鑑定 / ホルスタイン種 / AFLP法 / SNP s / 品種鑑定 / DNA多型 / RDA法
Research Abstract

1) BREED IDENTIFICATION; By using DNA markers (SNPs) developed by AFLP fingerprinting, we tried to identify Japanese Black, Holstein and their F1. More than 2000 primer sets were tested between two breeds and found 45 effective breed identifiable AFLP fragments were obtained. By testing 100 animals of each breeds using these 45 AFLP fragments, we could clearly discriminated these animals from each other. This method could prevent or reduce false or miss labeled beef in markets.
2) APPLICATION OF AFLP METHOD TO CATTLE BREEDING; By selecting 48 extreme animals from about 5,000 reproductive cows, 25 were the highest breeding value of beef marbling standard (BMS) and 23 were the lowest breeding value of BMS, a kind of association study was done. By AFLP fingerprinting, DNA from those extreme animals were compared about 500 primer sets, which is equivalent to mapping of more than 2,000 markers on a cattle linkage map and finally get 16 effective AFLP fragments which discriminate two extremes, high and low. Quite higher correlation coefficient, r=0.92 were obtained between breeding value of BMS and general genetic value (GGV) estimated using those 16 fragments. This GGV value was applied to additional 121 animals if the GGV is useful or not. Again higher correlation coefficient between BMS breeding value and GGV, r=0.70, was obtained another animals from the herd with an additional higher correlation coefficient, r=0.63, between rib eye muscle area (REA) breeding value and GGV. In generally, higher correlation between BMS and REA is well known, so that this result is reasonable from the data of statistical genetics. This result offers an epoch-making strategy in animal breeding.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (30 results)

All Other

All Publications (30 results)

  • [Publications] Mannen H.: "Identification of mitochondrial DNA substitutions related to meat quality in Japanese Black cattle"J.Anim.Sci.. 81. 68-73 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Shimogiri T.: "Linkage mapping of the mitochondrial aconitase (ACO2) gene to chicken chromosome 1"Anim.Genet.. 29. 1 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Lee Un Jun: "Localization of the muscular dystrophy AM locus using a chicken linkage map constructed with the Kobe University resource family"Anim.Genet.. 33. 42-48 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Mannen H.: "Mitochondrial DNA reveal that domestic goat (Capra hircus) are genetically affected by two subspecies of bezoar (Capra aegagurus)"Biochem.Genet.. 39. 145-154 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 笹崎晋史: "AFLPマーカーを用いた肉用牛5品種の系統分析"日本畜産学会報. 72. J1-J5 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Oyama, K.: "Heritability and repeatability estimated for reproductive traits of Japanese Black cows"Asia-Australian J.Anim.Sci.. 15. 1680-1685 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 辻 荘一: "動物遺伝育種学事典"シュプリンガー・ヘアラーク東京. 636 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Mannen, Y. Nagata, & S. Tsuji: "Mitochondrial DNA reveal that domestic goat (Capra hircus) are genetically affected by two subspecies of bezoar (Capra aegagurus)"Biochemical Genetics. 39. 145-154 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] E. J. Lee, K. Yoshizawa, H. Mannen, H. Kikuchi, T. Kikuchi, M. Mizutani, & S. Tsuji: "Localization of the muscular dystrophy AM locus using a chicken linkage map constructed with the Kobe University resource family"Anim. Genet.. 33. 42-48 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T. Shimogiri, S. Miyagawa, E. J. Lee, H. Mannen, S. Okamoto, Y. Maeda, & S. Tsuji: "Linkage mapping of the mitochondrial aconitase (ACO2) gene to chicken chromosome 1"Anim. Genet.. 33. 312 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Mannen, M. Morimoto, K. Oyama, F. Mukai, and S. Tsuji: "Identification of mitochondrial DNA substitutions related to meat quality in Japanese Black cattle"J. Anim. Sci.. 81. 68-73 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nomura, T., Honda, T., and Mukai, F.: "Inbreeding and effective population size of Japanese Black cattle"J. Anim. Sci.. 79(2). 366-370 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Oyama, K., and Mukai, F.: "Optimization of mating design via a simple genetic algorithm with constrained inbreeding and mating frequency in a long-term selection"Anim. Sci. J.. 72(4). 279-284 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Honda, T., Nomura, T., Fukushima, M., and Mukai, F.: "Genetic diversity of a closed population of Japanese Black cattle in Hyogo Prefecture"Anim. Sci. J.. 72(5). 378-385 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nomura, T., Mukai, F., and Yamamoto, A.: "Comparison of selection schemes for achieving desired gains in closed broiler lines"Anim. Sci. J.. 72(5). 386-394 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Honda, T., Nomura, T., Fukushima, M., and Mukai, F.: "Gene dropping analysis of founder contribution in a closed Japanese Black cattle population"Anim. Sci. J.. 73(2). 105-111 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Mannen H.: "Identification of mitochondrial DNA substitutions related to meat quality in Japanese Black cattle"J. Anim. Sci.. 81. 68-73 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Shimogiri T.: "Linkage mapping of the mitochondrial aconitase (ACO2) gene to chicken chromosome 1"Anim. Genet.. 29. 1 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Lee Un Jun: "Localization of the muscular dystrophy AM locus using a chicken linkage map constructed with the Kobe University resource family"Anim. Genet.. 33. 42-48 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Mannen H.: "Mitochondrial DNA reveal that domestic goat (Capra hircus) are genetically affected by two subspecies of bezoar (Capra aegagurus)"Biochem. Genet.. 39. 145-154 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] 笹崎晋史: "AFLPマーカーを用いた肉用牛5品種の系統分析"日本畜産学会報. 72. J1-J5 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] Oyama, K.: "Heritability and repeatability estimated for reproductive traits of Japanese Black cows."Asia-Australian J. Anim. Sci.. 15. 1680-1685 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 辻 荘一: "動物遺伝育種学事典"シュプリンガー・ヘアラーク東京. 636 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] Lee E.J.et al.: "Localization of the muscular dystrophy AMlocus using a chicken linkage map constructed with the Kobe University resource family"Animal Genetics. 33 No.1. 42-48 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Mannen, H. et al.: "Mitochondrial DNA reveal that domestic goat (Capra hircus) are genetically affected by two subspecies of bezoar (Capra aegagurus)"Biochemical Genetics. 39. 145-154 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Honda, T. et al.: "Genetic diversity of a closed population of Japanese Black cattle in Hyogo Prefecture"Anim. Sci. J.. 72. 378-385 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 笹崎晋史: "AFLPマーカーを用いた肉用牛5品種の系統分析"日本畜産学会報. 72. J1-J5 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nomura, T. et al.: "Inbreeding and effective population size of Japanese Black cattle"J. Anim. Sci.. 79. 366-370 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Oyama, K. et al.: "Optimization of mating design via a simple genetic algorithm with constrained inbreeing and mating frequency in a long-term selection"Anim. Sci. J.. 72. 279-284 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 辻 荘一他: "動物遺伝育種学事典"動物遺伝育種シンポジウム組織委員会編. 636 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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