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Accumulation of primary data for construction of database in wild-rice genetic resources collected in tropical Asia.

Research Project

Project/Area Number 13460144
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物資源科学
Research InstitutionTohoku University

Principal Investigator

SATO Tadashi  Tohoku University, Graduate School of Life Sciences, Associate Professor, 大学院・生命科学研究科, 助教授 (40134043)

Co-Investigator(Kenkyū-buntansha) UENO Kihachi  Tokyo University of Agriculture, Faculty of Bio-industry, Associate Professor, 生物産業学部, 助教授 (30223481)
NAKAMURA Ikuo  Chiba University, Graduate School of Science and Technology, Associate Professor, 大学院・自然科学研究科, 助教授 (50207867)
ISHIKAWA Ryuuji  Hirosaki University, Faculty of Agriculture and Life Science, Associate Professor, 農学生命科学部, 助教授 (90202978)
ISHII Takashige  Kobe University, Faculty of Agriculture, Associate Professor, 農学部, 助教授 (20260648)
SATO Yoichiro  Tohoku University, Research Institute for Humanity and Nature, Professor, 総合地球環境学研究所, 教授 (20145113)
宍戸 理恵子  日本大学, 生物資源科学部, 助手 (90307819)
島本 義也  北海道大学, 大学院・農学研究科, 教授 (00001438)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥14,600,000 (Direct Cost: ¥14,600,000)
Fiscal Year 2003: ¥4,300,000 (Direct Cost: ¥4,300,000)
Fiscal Year 2002: ¥5,000,000 (Direct Cost: ¥5,000,000)
Fiscal Year 2001: ¥5,300,000 (Direct Cost: ¥5,300,000)
KeywordsWild rice / Database / Environmental Adaptation / Mitochondria DNA / DNA marker / Chloroplast DNA / Microsatellite / Visual data
Research Abstract

The construction of database concerning the wild rice resources stored in gene banks is necessary for the utilization of rice breeding. because these wild rices are genetic recourses. The purpose of this research project supported by Grant-in Aid is to construct the database of wild rice strains collected in tropical and subtropical Asia. The primary goal of this research project was to accumulation of primary data concerning morphological, physiological and molecular markers in addition to field data in habitation site, as follow. 1. Field data of collection sites in wild rices (latitude, longitude, elevation, disturbance of wild rice, water and soil condition. et al.). 2. Morphological data of seed and physiological data of seedling (germination, dormancy, temperature tolerance. et al.). 3. Polymorphism of mitochondrial DNA and G-repeat in 3^<rd> intron region for the distinction among wild rice species. 4. Polymorphism of chlorophyll DNA for the distinction among wild rice strains. 5. Diversity of 45SeRNA gene number on chromosomes in somatic cells. 6. Polymorphism of microsatellite in chlorophyll DNA for the distinction among AA genome species in wild rice. 6. Visual database of wild rice seeds (hull color, length and color of awn, density and length of apical hair, length of glumes).

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Kuroda Y., Urairong H., Sato Y-I.: "Differential heterosis in a natural population of Asian wild rice (Oryza rufipogon) due to reproductive strategy and edge effect."Genetic Resources and Crop Evolution. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ishikawa R., Yamanaka S., Fukuta Y., Chitrakon S., Bounphanousay C., Kanyavong K., Tang L-H., Nakamura I., Sato T., Sato Y-I.: "Genetic erosion from modern varieties into traditional upland rice cultivars (Oryza sativa L.) in northern Thailand"Genetic Resources and Crop Evolution. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ishikawa R., Toki N., Imai K., Sato Y-I., Yamagishi H., Shimamoto Y., Ueno K., Morishima H., Sato T.: "Origin of weedy rice grown in Bhutan and the force of genetic diversity"Genetic Resources and Crop Evolution. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamanaka S., Nakamura I., Nakai H., Sato Y.-I.: "Dual origin of the cultivated rice based on molecular markers of newly collected annual and perennial strains of wild rice species, Oryza nivara and O.rufipogon."Genetic Resources and Crop Evolution. 50. 529-538 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kuroda Y., Urairong H., Sato Y-I.: "Population genetic structure of wild rice (Oryza rufipogon) in mainland Southeast Asia as revealed by microsatellite polymorphisms."Tropics. 12. 159-170 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamanaka S., Fukuta Y., Ishikawa R., Nakamura I., Sato T., Sato Y-I.: "Phylogenetic origin of waxy rice cultivars in Laos based on recent observation for "Glutinous rice zone" and dCAPS marker of waxy gene."Tropics. 11. 109-120 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 佐藤 雅志, 佐藤洋一郎: "野生イネに内生する窒素固定エンドファイト、野生イネの考古学、野生イネの自然史 森島啓子編著"北海道大学図書刊行会. 91-106,123-138 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kuroda Y., Urairong H., Sato Y-I.: "Differential heterosis in a natural population of Asian wild rice (Oryza rufipogon) due to reproductive strategy and edge effect."Genetic Resources and Crop Evolution. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ishikawa R., Yamanaka S., Fukuta Y., Chitrakon S., Bounphanousay C., Kanyavong K., Tang L-H., Nakamura I., Sato T., Sato Y-I.: "Genetic erosion from modern varieties into traditional upland rice cultivars (Oryza sativa L.) in northern Thailand"Genetic Resources and Crop Evolution. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ishikawa R., Toki N., Imai K., Sato Y-I., Yamagishi H., Shimamoto Y., Ueno K., Morishima H., Sato T.: "Origin of weedy rice grown in Bhutan and the force of genetic diversity"Genetic Resources and Crop Evolution. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamanaka S., Nakamura I., Nakai H., Sato Y.-I.: "Dual origin of the cultivated rice based on molecular markers of newly collected annual and perennial strains of wild rice species, Oryza nivara and O.rufipogon."Genetic Resources and Crop Evolution. 50(in press). 529-538 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kuroda Y., Urairong H., Sato Y-I.: "Population genetic structure of wild rice (Oryza rufipogon) in mainland Southeast Asia as revealed by microsatellite polymorphisms."Tropics. 12. 159-170 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamanaka S., Fukuta Y., Ishikawa R., Nakamura I., Sato T., Sato Y-I.: "Phylogenetic origin of waxy rice cultivars in Laos based on recent observation for "Glutinous rice zone" and dCAPS marker of waxy gene"Tropics. 11. 109-120 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sato T.: "Endophytic diazotrophs in wild rice. In Nature history of wild rice. (Edited by Morishima H.)"Hokkaido University Press. 91-106 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamanaka S., Nakamura I., Watanabe K N., Sato Y-I.: "Identification of SNPs in the waxy gene among glutious rice cultivars and their evolutionary significance during the domestication process of rice"Theor Appl Genet.. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ishikawa R.et al.: "Origin of weedy rice grown in Bhutan and the force of genetic diversity"Genetic Resources and Crop Evolution. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yamanaka S., Nakamura I., Watanabe K N., Sato Y-I: "Identification of SNPs in the waxy gene among glutious rice cultivars and their evolutionary significance during the domestication process of rice"Genetic Resources and Crop Evolution. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kuroda Y., Urairong H., Sato Y-I.: "Differential heterosis in a natural population of Asian wild rice (Oryza rufipogon) due to reproductive strategy and edge effect"Genetic Resources and Crop Evolution. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kuroda Y., Urairong H., Sato Y-I.: "Population genetic structure of wild rice (Oryza rufipogon) in mainland Southeast Asia as revealed by microsatellite polymorphisms"Tropics. 12. 159-170 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yamanaka S., Nakamura I., Nakai H., Sato Y-I.: "Dual origin of the cultivated rice based on molecular markers of newly collected annual and perennial strains of wild rice species, Oryza nivara and O.rufipogon"Genetic Resources and Crop Evolution. 50. 529-538 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 佐藤 雅志, 佐藤洋一郎: "野生イネに内生する窒素固定エンドファイト、野生イネの考古学 野生イネの自然史"森島啓子編著 pp.91-106.、pp.123-138"北海道大学図書刊行会. 215 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ishikawa R., S.Yamanaka, K.Kanyavong, Y.Fukuta, Y-I.Sato, L.Tang, T.Sato: "Genetic resources of primitive upland rice in Laos"EconomicBotany. 56. 192-197 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kinosahita, T., R.Ishikawa: "Genetical studies of isoenzymes inrice plants I -General Viewpoint-"Recent Res. Devel. Genet. 2. 43-95 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ishikawa R., I.Nakamura, T.Nishihara, M.Kikuchi, M.Senda, S.Akada, T.Harada, M.Niizeki: "Origin of cytoplasm substituted rice cultivars found in Japan"Theor. Appl. Genet. 104. 1086-1091 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ishikawa R., Y-I.Sato, T.Tang, I.Nakamura: "Nakamura. Different maternal origins of Japanese lowland and upland rice populations"Theor. Appl. Genet. 104. 976-980 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yamanaka, S., Y.Fukuta, R.Ishikawa, I.Nakamura, T.Sato, Y-I.Sato: "Phylogenetic origin of waxy rice cultivars in Laos based on recent observations for "glutinous rice zone" and dCAPS marker of waxy gene"TROPICS. 11. 109-120 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Obara M., Kajiura M., Fukuta Y., Yano M., Hayashi M., Yamaya T., Sato T.: "Mapping of QTLs associated with cytosolic glutamine synthetase and NADH-glutamate synthase in rice (Oryza sativa L.)"Jour. Exp. Bot.. 52. 1209-1217 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kumagai T., Hidema J., Kang H.S., Sato T.: "Effects of supplemental UV-B radiation on the growth and yield of two cultivars of Japanese lowland rice (Oryza sativa L.) under the field in a cool rice-growing region of Japan"Agr. Eco. Env.. 83. 201-208 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hidema, J., Song, I-K., Sato, T., Kumagai, T.: "Relationship between ultraviolet-B sensitivity and cyclobutane pyrimidine dimer photorepair in rice"J. Radiat. Res.. 42. 295-303 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ishikawa R., I.Nakamura, T.Nishihara, M.Kikuchi, M.Senda, S.Akada, T.Harada, M.Niizeki: "Origin of cytoplasm substituted rice cultivars found in Japan"Theor. Appl. Genet. (In press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ishikawa R., Y-I.Sato, T.Tang, I.Nakamura: "Different maternal origins of Japanese lowland and upland rice populations"Theor. Appl. Genet. (In press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Takesawa, T., M.Ito, H.Kanzaki, N.Kameya, I.Nakamura: "Enhanced tolerance to chilling with regard to in seed germination and seedling growth of transgenic rice plants that overexpress a glutathione S-transferase (GST) gene"Mol. Breed. (In press). (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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