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Genetic differentiation and phylogeny of domestic and wild bovines basedon DNA information

Research Project

Project/Area Number 13460146
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物資源科学
Research InstitutionNagoya University

Principal Investigator

NAMIKAWA Takao  Nagoya University, Graduate School of Bioagricultural Sciences, Professor, 大学院・生命農学研究科, 教授 (70111838)

Co-Investigator(Kenkyū-buntansha) ISHIKAWA Akira  Nagoya University, Graduate School of Bioagricultural Sciences, Associate Professor, 大学院・生命農学研究科, 助教授 (20211724)
YAMAMOTO Yoshio  Hiroshima University, Graduate School of Biospher Science, Professor, 大学院・生物圏科学研究科, 教授 (10032103)
OZAWA Tomoo  Nagoya University, Graduate School of Environment Science, Professor, 大学院・環境研究科, 教授 (80037233)
YAMAGATA Takahiro  Nagoya University, Graduate School of Bioagricultural Sciences, Associate Professor, 大学院・生命農学研究科, 助手 (50242847)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥15,300,000 (Direct Cost: ¥15,300,000)
Fiscal Year 2003: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2002: ¥4,900,000 (Direct Cost: ¥4,900,000)
Fiscal Year 2001: ¥7,700,000 (Direct Cost: ¥7,700,000)
Keywordsgenetic resources / animal history / cattle / water buffalo / domestic animal / genetic variation / genetic differentiation / satellite DNA / 牛亜科 / 牛 / 水牛 / 遺伝的分化 / 系統進化 / 多元起源説 / AFLP
Research Abstract

1.It has been unclosed by our group and other researchers that most Asian native cattle are originated from various grades of mixtures with three distinct types of cattle, that is, the humpless (or European type) cattle, Indian zebu cattle and banteng(Bos javanicus, a wild cattle endemic to Southeast Asia). Similarly, the domestic water buffaloes are classified into two major types, that is, the, swamp type buffaloes and river type buffaloes. In some area of eastern Asia, however there are mixed populations with the two types. The native domestic cattle and water buffaloes have the polygenic origin of domestication.
2.The present research aimed to establish an efficient method to estimate genetic conformation of Asian domestic bovines by using satellite DNAs which occupy 4% of the whole genome. We analyzed repeated sequence of satellite DNAs of water buffalo and found two different repeated sequences in the satellite DNAs. One named S-I was found by a restriction enzyme BamHI and 1400bp in size of the repeat-unit (800bp and 600bp when used a restriction enzyme Stu I). The other repeat-unit named S-II was 700bp by Bam HI and 400bp and 300bp by Stu I. The S-I and S-II were confirmed to localize specific to C-band regions or the centromeric regions of the chromosomes by FISH method. However, FISH signal intensity on respective chromosomes were different between S-I and S-II. Homologies of S-I andS-II from the water buffaloes were 79% and 81% to those of cattle, respectively.
3.Thus, if we could select specific restriction enzymes to produce specific fragments of those repeat-units in satellite DNAs to different types of bovines or bubalines, their genetic confirmation would be easily estimated at a level of individual. We could give essential information to establish such method.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (29 results)

All Other

All Publications (29 results)

  • [Publications] Nishibori, M.: "Complete sequence of mitochondrial D-loop region of Red jungle fowls (Gallusgallus) and their genetic diversity in Myanmar and its neighbor countries"Report of Society for Researches on Native Livestock. 21(in press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Anunciado, R.N.P.: "External characteristics, biochemical profile and organ Weight of the Philippine, wild mouse (Mus musculus castaneus)"Philippine Journal of Veterinary Medcine. 40. 32-36 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nishibori, M.: "Characterization of major histocompatibility complex genes in jungle fowls, genus Gallus"Journal Poultry Science. 40. 21-29 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Anunciado, R.V.P.: "Quantitative trait locus analysis of serum insulin, triglyceride total cholesterol and phospholipid levels in the (SM/JxA/J)F2mice"Experimental Animals. 52. 37-42 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kikkawa, Y.: "Phylogenies using mtDNA and SPY provide evidence for male mediated introgression in Asian domestic cattle"Animal Genetics. 34. 96-101 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nishibori, M: "Complete sequence of mitochondrial D-loop region of Red jungle fowls(Gallusgallus)and their genetic diversity in Myanmar and its neighbor countries"Report of Society for Researches on Native Livestock. (in press)21. (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Anunciado, R.V.P.: "External characteristics, biochemical profile and organ weights of the Philippine wild mouse (Mus mnusculus castaneus)."Philipp.J.Vet.Med.. 40. 32-36 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nishibori, M.: "Characterization of major histocompatibility complex genes in jungle fowls, genus Gallus."J.Poult.Sci.. 40. 21-29 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Anunciado, R.V.P.: "Quantitative trait locus analysis of serum insulin, triglyceride, total cholesterol and phospholipid levels in the (SM/JxA/J)F2 mice."Exp.Anim.. 52. 37-42 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kikkawa, Y.: "Phylogenies using mtDNA and SRY provide evidence for male-mediated introgression in Asian domestic cattle."Anim.Genet.. 34. 96-101 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nisibori, M.: "Complete sequence of mitochondrial D-loop region of Red jungle fowls (Gallus gallus) and their genetic diversity in Myanmar and its neighbor countries"Report of Society for Researches on Native Livestock. 21(in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Anunciado, R.V.P.: "External characteristics, biochemical profile and organ weight of the Philippine wild mouse (Mus musculus castaneus)"Philippine Journal of Veterinary Medcine. 40. 32-36 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nishibori, M.: "Characterization of major histocompatibility complex genes in jungle fowls, genes Gallus"Journal Poultry Science. 40. 21-29 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Anunciado, R.V.P.: "Quantitative trait locus analysis of serum insulin, triglyceride, total cholesterol and phospholipid levels in the (SM/JxA/J) F2mice"Experimental Animals. 52. 37-42 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kikkawa, Y.: "Phylogenies using mtDNA and SRY provide evidence for male-mediated introgression in Asian domestic cattle"Animal Genetics. 34. 96-101 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Bastian, S.T.Jr.: "Evolutionary relationships of flying foxes (Genus Pteropus) in the Philippines inferred from DNA sequences of cytochrome b gene"Biochemical Genetics. 40. 101-116 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nishibori, M.他: "Characterization of major histocompatibility complex genes in junglefowls, genus Gallus"J. Poult. Sci. 40(1). 21-29 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Anunciado, R.V.P.他: Eexp. Anim.. 52. 37-42 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Zhao, W.D.他: Mamm. Genome. 13. 345-351 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kinoshita, K.他: "Gene constitution of egg white proteins in Vietnamese native chickens"Rep. Soc. Res. Native Livestock. 20. 9-18 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 鈴木康朗他: "西表島産リュウキュウイノシシの核型解析"在来家畜研究報告書. 20. 19-23 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 西堀正英: "ラオスおよびその近隣国における在来鶏およびヤケイの分子系統学的解析"在来家畜研究会報告. 20. 25-34 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 前田芳實: "在来家畜研究会報告第21号"財)名古屋畜産学研究所(印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Minoshima, Y.ら: "Molecular cloning, expression analysis, promoter characterization, and chromosomal localization of the bovine PREF1 gene"Animal Genetics. 32. 333-339 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Bastian, Jr.S.T. ら: "Phylogenetic relationships among megachiropteran species from the two major islands of the Philippines, deduced from DNA sequences of the cytochrome b gene"Canadian Journal of Zoology. 79. 1671-1677 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ikeda, H. ら: "Virological properties and Nucleotide Sequences of Cas-E-Type endogenous ecotropic murine leukemia viruses in south Asian wild mice, Mus musculus castaneus"Journal of Virology. 75(11). 5049-5058 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Anunciado, R.V.P: "Quantitative trait loci for body weight in the intercross between SM/J and A/J mice"Experimental Animals. 50(4). 319-324 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Aso, S. ら: "The eye lens aplasia (elap) maps to mouse chromosome 2"Experimental Animals. 50. 97-98 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Suzuki, T. ら: "Quantitative trait locus analysis of abnormal circadian period in CS mice"Mammalian Genome. 12. 272-277 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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