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Construction of functional nanomachine using Virus components as basic materials

Research Project

Project/Area Number 13470063
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Virology
Research InstitutionTokyo Institute of Technology

Principal Investigator

HANADA Hiroshi  Tokyo Institute of Technology, Frontier Collaborative Research Center, Professor, フロンティア創造共同研究センター, 教授 (80107432)

Co-Investigator(Kenkyū-buntansha) ARISAKA Fumio  Tokyo Institute of Technology, Graduate School of Biosciense and Biotechnology, Associate Professor, 大学院・生命理工学研究科, 助教授 (80133768)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥13,800,000 (Direct Cost: ¥13,800,000)
Fiscal Year 2002: ¥5,600,000 (Direct Cost: ¥5,600,000)
Fiscal Year 2001: ¥8,200,000 (Direct Cost: ¥8,200,000)
KeywordsSV40 / AAV / capsid protein / virus-like particle / recombinant plasmid / nano-machine
Research Abstract

The siman virus 40 (SV40) capsid is composed of 72 pentamers of its major protein, VP1, that are arranged in a icosahedral surface lattice. This structure is maintained by appropriately arranged three types of non-equivalent interactions between the pentamers. However, it remains unclear how these interactions are achieved. We analyzed the in vitro assembly of recombinant VP1. Electron microscopic observations revealed that these VP1s assembled into structurally divergent particles depending on the conditions. The VP1 pentamers efficiently assembled into virus-like particles (VLPs) when high ammonium sulfate concentrations are present. In the presence of Ca2+ at neutral pH, the VP1 pentamers formed not only VLPs but also produced tiny icosahedral particles and tubular structures. Exclusion of Ca2+ resulted in the exclusive formation of the tiny particles. In contrast, at pH 5, the VP1 pentamers produced only extraordinarily long tubular structures. VP1 is thus quite unique in htat it can assemble into such diverse structures, and the assembly properties of SV40 VP1 are clearly different from those of previously reported murine polyoma virus VP1. These observations provide clues that will help elucidate the mechanisms underlying SV40 capsid formation. Moreover, that particular conditions promote the selective assembly of VP1 into different particle structures suggests that we can alter the shapes and sizes of the aritifical SV40 capsids used to deliver drugs or genes.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Y.Yamaguchi, N.Inukai, T.Narita, T.Wada, H.Handa: "Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA"Molecular and Cellular Biology. 22. 2918-2927 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Hiramoto, N.Shimizu, T.Nishi, D.Shima, S.Aizawa, H.Tanaka, M.Hatakeyama, H.Kawaguchi, H.Handa: "High-performance affinity beads for identifying anti-NF-κB drug receptors"Methods Enzymology. 353. 81-88 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] C.Sawa, T.Yoshikawa, F.Matsuda-Suzuki, S.Delehouzee, M.Goto, H.Watanabe, J.Sawada, K.Kataoka, H.Handa: "YEAF1/RYBP and YAF-2 are functionally distinct members of a confactor family for the YY1 and E4TF1/hGABP transcription factors"J.Biological Chemistry. 277. 22484-22490 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Yamaguchi, S.Delehouzee, H.Handa: "HIV and hepatitis delta virus : evolution takes different paths to relieve blocks in transcriptional elongation"Microbes Infection. 4. 1169-1175 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Nishi, N.Shimizu, M.Hiramoto, I.Sato, Y.Yamaguchi, M.Hasegawa, S.Aizawa, H.Tanaka, K.Kataoka, H.Watanabe, H.Handa: "Spatial redox regulation of a critical cysteine residue of NF-κB in vivo"J.Biological Chemistry. 277. 44548-44556 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] K-I.Ishizu, S.Kanesashi, S-I.Han, M.Kawano, S.Tomita, H.Watanabe, K.Kataoka, H.Handa: "Siman Viirus 40 VP1 Capsid Protein Assembled in vitro Forms Structually Divergent Particles"J.General Virology. 84. 1899-1905 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 半田 宏 共著, 小泉光恵, 奥山喜久夫, 目義雄 編集: "ナノ粒子の製造・評価・応用・機器の最新技術"株式会社 シーエムシー出版. 272 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Ymaguchi, N.lnukai, T.Narita, T.Wada and H.Handa: "Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA"Mol. Cell Biol.. 22. 2918-2927 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Nishi, N.Shimizu, M.Hiramoto, I.Sato, Y.Yamaguchi, M.Hasegawa, S.Aizawa, H.Tanaka, K.Kataoka, H.Watanabe andH. Handa.: "Spatial redox regulation of a critical cysteine residue of NF-_KB in vivo"J. Biol. Chem.. 277. 44548-44556 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] K.Kataoka, S-I. Han, S.Shioda, M.Hirai, M.Nishizawa and H.Handa.: "MafA is a glucose-regulated and pancreatic beta-cell-specific transcriptional activator for the insulin gene"J. Biol. Chem.. 277. 49903-49910 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Yamaguchi, S.Delehouzee and H.Handa.: "HIV and hepatitis delta virus evolution takes different paths to relieve blocks in transcriptional elongation"Microbes Infect,. 4. 1169-1175 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] C.Sawa, T.Yoshikawa, F Matsuda-Suzuki, S.Delehouzee, M.Goto, H.Watanabe, J.Sawada, K.Kataoka, and H.Handa: "YEAF1/RYBP and YAF-2 are functionally distinct members of a contactor family for the YY1 and E4TF1/hGABP transcription factors"J. Biol. Chem.. 277. 22484-22490 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Hiramoto, N.Shimizu, T Nishi, D Shima, S.Aizawa, H.Tanaka, M Hatakeyama, H Kawaguchi and H.Handa: "High-performance affinity beads for identifying anti-NF- _K B drug receptors"Methods Enzymol.. 353. 81-88 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] T.Narita, Y.Yamaauchi, K.Yano, S Sugimoto, T.Wada, D-K.Kim, J.Hasegawa, M.Omori, N.lnukai, M Endou, T.Yamada, and H.Handa: "Human transcription elongation factor NELF : Identification of novel subunits and reconstitution of the functionally active comolex"Mol. Cell. Biol.. 23. 1863-1873 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] D-K.Kim, N.lnukai, T.Yamada, A Furuya, H.Sato, Y.Yamaguchi, T.Wada and H.Handa.: "Requirement for human Spt4 in RNA polymerase II elongation control in vitro"Genes Cells. 8. 371-378 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] D.Shima, M.Yugami, M.Tatsuno, T.Wada, Y.Yamaguchi and H. Handa: "Mechanism of H-8 inhibition of Cyclin-dependent kinase 9 : study using inhibitor-immobilized matrices"Genes Cells. 8. 215-223 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] J.Hasegawa, M.Endou, T.Narita, T.Yamada, Y.Yamaguchi, T.Wada and H.Handa: "A rapid purification method for human RNA polymerase II by two-step affinity chromatography"J. Biochem.. 133. 133-138 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] K-I.lshizu, S.Kanesashi,S-I.Han, M. Kawano, S.Tomita, H. Watanabe, K. Kataoka and H. handa.: "Siman Viirus 40 VP1 Capsid Protein Assembled in vitro Forms Structually Divergent Particles"J. General Virology. 84. 1899-1905 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Y.Yamaguchi, N.Inukai, T.Narita, T.Wada, H.Handa: "Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA"Molecular and Cellular Biology. 22. 2918-2927 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Hiramoto, N.Shimizu, T.Nishi, D.Shima, S.Aizawa, H.Tanaka, M.Hatakeyama, H.Kawaguchi, H.Handa: "High-performance affinity beads for identifying anti-NF-κB drug receptors"Methods Enzymology. 353. 81-88 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] C.Sawa, T.Yoshikawa, F.Matsuda-Suzuki, S.Delehouzee, M.Goto, H.Watanabe, J.Sawada, K.Kataoka, H.Handa: "YEAF1/RYBP and YAF-2 are functionally distinct members of a confactor family for the YY1 and E4TF1/hGABP transcription factors"J. Biological Chemistry. 277. 22484-22490 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Yamaguchi, S.Delehouzee, H.Handa: "HIV and hepatitis delta virus : evolution takes different paths to relieve blocks in transcriptional elongation"Microbes Infection. 4. 1169-1175 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Nishi, N.Shimizu, M.Hiramoto, I.Sato, Y.Yamaguchi, M.Hasegawa, S.Aizawa, H.Tanaka, K.Kataoka, H.Watanabe, H.Handa: "Spatial redox regulation of a critical cysteine residue of NF-κB in vivo"J. Biological Chemistry. 277. 44548-44556 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] K.Kataoka, S-I.Han, S.Shioda, M.Hirai, M.Nishizawa, H.Handa: "MafA is a glucose-regulated and pancreatic beta-cell-specific transcriptional activator for the insulin gene"J. Biological Chemistry. 277. 49903-49910 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 半田 宏 共著, 小泉光恵, 奥山喜久夫, 目義雄 編集: "ナノ粒子の製造・評価・応用・機器の最新技術"株式会社 シーエムシー出版. 272 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Guo, Y.Yamaguchi, H.Handa, A.Rosenthal, et al.: "A regulator of transcriptional elongation controls vertebrate neuronal development"Nature. 408. 366-369 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K-I.Ishizu, H.Handa, et al.: "The roles of disulfide linkage and calcium ion-mediated interactions in assembly and disassembly by virus-like particles composed of SV4O VP1 capsid protein"J. Virology. 75. 61-72 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Shiba, H.Handa, et al.: "Cloning of the hamster androgen receptor gene"J. Dermatol. Sci.. 26. 163-168 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] E.Morii, H.Handa, Y.Kitamura, et al.: "Inhibitory effect of MITF encoded by the mutant mi allele on GABP-mediated transcript expression in mouse mast cells"Blood. 15. 3032-3039 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Yamaguchi, H.Handa, et al.: "Stimulation of RNA polymerase II elongation by Hepatitis delta antigen"Science. 293. 124-127 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Kataoka, H.Handa, M.Nishizawa, et al.: "Maf and Jun nuclear oncoproteins share downstream target genes for inducing cell transformation"J. Biol. Chem.. 276. 36849-36856 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 半田宏共著, 村松正實編集: "転写因子と疾患"医歯薬出版株式会社. 136 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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