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Analysis of replication and transcription mechanisms in a newly discovered circular, single-stranded DNA virus (TTV)

Research Project

Project/Area Number 13470067
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Virology
Research InstitutionJichi Medical University

Principal Investigator

OKAMOTO Hiroaki  JICHI MEDICAL SCHOOL, SCHOOL OF MEDICINE, PROFESSOR, 医学部, 教授 (30177092)

Co-Investigator(Kenkyū-buntansha) TAKAHASHI Masaharu  JICHI MEDICAL SCHOOL, SCHOOL OF MEDICINE, ASSOCIATE PROFESSOR, 医学部, 講師 (70326841)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥10,700,000 (Direct Cost: ¥10,700,000)
Fiscal Year 2003: ¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 2002: ¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2001: ¥4,100,000 (Direct Cost: ¥4,100,000)
KeywordsTTV / circular single-stranded DNA virus / replicative intermediate / mRNA / liver / tandem dimer / transfection / RFLP / tandem dimer / transfection / 培養細胞 / 転写調節機構 / Transfection / 好中球
Research Abstract

TTV is a novel virus with the circular, single-stranded DNA genome that we isolated from the serum of a patient with posttransfusion acute hepatitis of unknown etiology in 1997. Its replication mechanism and transcription profile remained unknown. Therefore, in the present study, we examined the presence of double-stranded DNA as a replicative intermediate and mRNA in various tissues in infected individuals. Circular double-stranded TTV DNA in the replicative intermediate form as well as TTV mRNA were detected not only in liver tissues but also in bone marrow cells, lung tissues, spleen, thyroid gland and pancreas. In addition, it was found that TTV is distributed in various leukocyte subpopulations at distinct levels, with the highest viral load in granulocytes. We tried to find established cell lines supporting efficient replication of TTV, but it remains unsuccessful. Then, we constructed plasmids harboring a tandem dimer of the full-length TTV genome [3,853 nucleotides (nt)] or a monomer and introduced them separately into cultured hepatoma cells (HepG2 or Huh7). TTV mRNAs of 3.0, 1.2, or 1.0 kilobases (kb) were detectable in cells transfected with tandem dimers, but not in cells transfected with monomers. Sequence analysis of TTV mRNAs revealed that three distinct species of TTV rnRNAs possessed in common 5' and 3' termini as well as splicing of 91 nt, and that shorter mRNAs of 1.2 kb and 1.0 kb possessed another splicing of 1662 nt and 1855 nt, respectively. In the additional studies, it was revealed that TATA-box and its upstream 120-nt sequence consisting of GC-rich stem & loop structures have enhancer and promoter activities in vitro. However, production of viral particles in culture after transfection of tandem dimers is still unsuccessful, which indicates necessity of further continuous investigation.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (26 results)

All Other

All Publications (26 results)

  • [Publications] Okamoto H.: "Heterogeneous distribution of TT virus of distinct genotypes in multiple tissues from infected humans"Virology. 288. 358-368 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okamoto H.: "Genomic and evolutionary characterization of TT virus (TTV) in tupaias and comparison with species-specific TTVs in humans and non-human primates"Journal of General Virology. 82. 2041-2050 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Asabe S.: "Phosphorylation of serine-rich protein encoded by open reading frame 3 of the TT virus genome"Biochemical and Biophysical Research Communications. 286. 298-304 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yokoyama H.: "Pathological changes of renal epithelial cells in mice transgenic for the TT virus ORF1 gene"Journal of General Virology. 83. 141-150 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kato S.: "Helicobacter pylori and TT virus prevalence in Japanese children"Journal of Gastroenterology. 38. 1126-1130 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okamoto H.: "TTV (TT virus or its official name, Torque Teno virus) : molecular virology and clinical implications"Perspectives in Medical Virology. 10. 241-254 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okamoto H, et al.: "Heterogeneous distribution of TT virus of distinct genotypes in multiple tissues from infected humans."Virology. 288. 358-368 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okamoto H, et al.: "Genomic and evolutionary characterization of TT virus (TTV) in tupaias and comparison with species-specific TTVs in humans and non-human primates."J Gen Virol. 82. 2041-2050 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Asabe S, et al.: "Phosphorylation of serine-rich protein encoded by open reading frame 3 of the TT virus genome."Biochem Biophys Res Commun. 286. 298-304 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yokoyama H, et al.: "Pathological changes of renal epithelial cells in mice transgenic for the TT virus ORF 1 gene."J Gen Virol. 83. 141-150 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kato S, et al.: "Helicobacter pylon and TT virus prevalence in Japanese children."J Gastroenterol. 38. 1126-1130 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okamoto H, et al.: "TTV (TT virus or its official name, Torque Teno virus) : molecular virology and clinical implications."Perspectives in Medical Virology. 10. 241-254 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kato S.: "Helicobacter pylori and TT virus prevalence in Japanese children"Journal of Gastroenterology. 38. 1126-1130 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Okamoto H.: "TTV (TT virus or its official name, Torque Teno virus) : molecular virology and clinical implications"Perspectives in Medical Virology. 10. 241-254 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takahashi M.: "TT virus is distributed in various leukocyte subpopulations at distinct levels, with the highest viral load in granulocytes"Biochemical and Biophysical Research Communications. 290. 242-248 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yokoyama H.: "Pathological changes of renal epithelial cells in mice transgenic for the TT virus ORF1 gene"Journal of General Virology. 83. 141-150 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Okamoto H.: "Genomic characterization of TT viruses (TTVs) in pigs, cats and dogs and their relatedness with species-specific TTVs in primates and tupaias"Journal of General Virology. 83. 1291-1297 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Peng Y.H.: "Analysis of the entire genomes of thirteen TT virus variants classifiable into the fourth and fifth genetic groups, isolated from viremic infants"Arch Virol. 147. 21-41 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Tokita H.: "High TT virus load as an independent factor associated with the occurrence of hepatocellular carcinoma among patients with hepatitis C virus-related chronic liver disease"Journal of Medical Virology. 67. 501-509 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ohto H.: "TT virus infection during childhood"Transfusion. 42. 892-898 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Okamoto H.: "Heterogeneous distribution of TT virus of distinct genotypes in multiple tissue s from infected humans"Virology. 288. 358-368 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Okamoto H.: "Genomic and evolutionary characterization of TT virus(TTV)in tupaias and comparison with species-specific TTVs in humans and non-human primates"Journal of General Virology. 82. 2041-2050 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Okamoto H.: "TT virus : virological and genomic characteristics and disease associations"Journal of Gastroenterology. 36. 519-529 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Shibayama T.: "Inverse relationship between the titre of TT virus DNA and the CD4 cell count in patients infected with HIV"AIDS. 15. 563-570 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Asabe S.: "Phosphorylation of serine-rich protein encoded by open reading frame 3 of the TT virus genome"Biochemical and Biophysical Research Communications. 286. 298-304 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Muljono D.H.: "Molecular epidemiology of TT virus(TTV)and characterization of two novel genotypes in Indonesia"Archives of Virology. 146. 1249-1266 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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