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DNA microarray analysis of the gene expression changes in retinal neuronal cell death.

Research Project

Project/Area Number 13470364
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Ophthalmology
Research InstitutionShinshu University

Principal Investigator

YOSHIMURA Nagahisa  Shinshu University, School of Medicine, Professor, 医学部, 教授 (70211662)

Co-Investigator(Kenkyū-buntansha) SHIBUKI Hiroto  Shinshu University, School of medicine, Assistant, 医学部, 助手 (70313864)
OHTA Kouichi  Shinshu University, University Hospital, Lecturer, 医学部附属病院, 講師 (70262730)
KIKUCHI Takanobu  Shinshu University, Instrumental Analysis, Professor, 機器分析センター, 教授 (50177797)
KUROIWA Sachiko  Shinshu University, University Hospital, Assistant, 医学部附属病院, 助手 (60313863)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥16,200,000 (Direct Cost: ¥16,200,000)
Fiscal Year 2003: ¥4,100,000 (Direct Cost: ¥4,100,000)
Fiscal Year 2002: ¥5,900,000 (Direct Cost: ¥5,900,000)
Fiscal Year 2001: ¥6,200,000 (Direct Cost: ¥6,200,000)
KeywordsNeuronal cell death / Retinal ischemia-reperfusion / Glaucoma / DNA microarray / Gene expression / ラット網膜虚血再灌流障害 / サル緑内障モデル / gene chip / 遺伝子発現 / real time PCR / 網膜 / 神経細胞死 / DNAマイクロチップ
Research Abstract

Two experimental models were used in this study. The first model was rat retinal is3chemia-reperfusion model. In this model, gene expression changes were systematically studied by using DNA microarrays that displayed more than 10,000 genes and ESTs. The number of genes that showed up-regulation of more than 3 folds was as many as 135 genes and such genes can be grouped into 6 different groups. (1) transcription factors (2) cell cycle-related genes (3) stress responsive genes (4) cell signaling genes (5) cell adhesion molecule genes (6) protease genes. Expression changes of some genes that belongs (1),(2),and (3) were also studied by the real time PCR analysis. In this model, importance of transcription factors and cell cycle-related genes was shown. The second model used was monkey glaucoma model. Ocular hypertension was induced in monkey eyes by laser photocoagulation of the trabecular meshwork. In this model, gene expression changes in the sensory retina were studied by using a human DNA microarray because ready-made monkey microarrays were not available. Contrary to the rat retinal ischemia-reperfusion model, the profile of gene expression changes found in the monkey glaucoma model was different from that found in the rat ischemia-reperfusion model. Only 0.7% of the genes studied showed up-regulation of more than 1.7 folds of the control. Among them, ceruloplasmin showed up-regulation and the expression changes were validated by the real time PCR, analysis and immunohistochemical studies. Three peer-reviewed papers have been published through the present study.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (9 results)

All Other

All Publications (9 results)

  • [Publications] Shibuki H, Katai N, Kuroiwa S, Kurokawa T, Arai J, Matsumoto K, Nakamura T, Yoshimura N.: "Expression and neuroprotective effect of hepatocyte growth factor in retinal ischemia-reperfusion injury."Investigative Ophthalmology and Visual Science. 43・2. 528-536 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshimura N, Kikuchi T, Kuroiwa S, Gaun S.: "Differential temporal and spatial expression of immediate early genes in retinal neurons following ischemia-reperfusion injury."Investigative Ophthalmology and Visual Science. 44・5. 2211-2220 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyahara T, Kikuchi T, Akimoto M, Kurokawa T, Shibuki T, Yoshimura N.: "Gene microarray analysis of experimental glaucomatous retina from cynomologous monkey."Investigative Ophthalmology and Visual Science. 44・10. 4347-4356 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shibuki H, Katai N, Kuroiwa S, Kurokawa T, Arai J, matsumoto K, Nakamura T, Yoshimura N.: "Expression and neuroprotective effect of hepatocyte growth factor in retinal ischemia-reperfusion injury."Investigative Ophthalmology and Visual Science. 43(2). 528-536 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshimura N, Kikuchi T, Kuroiwa S, Gaun S.: "Differential temporal and spatial expression of immediate early genes in retinal neurons following ischemia-reperfusion injury."Investigative Ophthalmology and Visual Science. 44(5). 2211-2220 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Miyahara T, Kikuchi T, Akimoto M, Kurokawa T, Shibuki T, Yoshimura N.: "Gene microarray analysis of experimental glaucomatous retina from cynomologous monkey."Investigative Ophthalmology and Visual Science. 44(10). 4337-4356 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shibuki H, Katai N, Kuroiwa S, Kurokawa T, Arai J, Matsumoto K, Nakamura T, Yoshimura N: "Expression and neuroprotective effect of hepatocyte growth factor in retinal ischemia-reperfusion injury"Investigative Ophthalmology and Visual Science. 43・2. 528-536 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yoshimura N, Kikuchi T, Kuroiwa S, Gaun S: "Differential temporal and spatial expression of immediate early genes in retinal neurons following ischemia-reperfusion injury"Investigative Ophthalmology and Visual Science. 44・5. 2211-2220 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Miyahara, T., Kikuchi, T., Akimoto, M., Kurokawa, T., Shibuki, T., Yoshimura, N.: "Gene mMicroarray analysis of experimental glaucomatous retina from cynomologous monkey"Investigative Ophthalmology and Visual Science. 44・10. 4347-4356 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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